data_8BTW # _model_server_result.job_id tEgVIDnw_Sw4dlPzsM0dHA _model_server_result.datetime_utc '2024-11-05 21:13:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8btw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8BTW # _exptl.entry_id 8BTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.135 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Vaborbactam _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BTW _cell.length_a 53.819 _cell.length_b 54.452 _cell.length_c 79.517 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id I _struct_conn.ptnr1_label_atom_id NA _struct_conn.ptnr1_label_comp_id NA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id NA _struct_conn.ptnr1_auth_seq_id 308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 535 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.187 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H16 B N O5 S' _chem_comp.formula_weight 297.135 _chem_comp.id 4D6 _chem_comp.mon_nstd_flag . _chem_comp.name Vaborbactam _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '{(3R,6S)-2-hydroxy-3-[(thiophen-2-ylacetyl)amino]-1,2-oxaborinan-6-yl}acetic acid;2-((3R,6S)-2-hydroxy-3-(2-(thiophen-2-yl)acetamido)-1,2-oxaborinan-6-yl)acetic acid;2-[(3R,6S)-2-hydroxy-3-[(2-thiophen-2-ylacetyl)amino]oxaborinan-6-yl]acetic acid;1,2-Oxaborinane-6-acetic acid, 2-hydroxy-3-((2-(2-thienyl)acetyl)amino)-, (3R,6S)-' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C18 4D6 doub 1 n n C18 C17 4D6 sing 2 n n C18 O19 4D6 sing 3 n n C17 C14 4D6 sing 4 n n C14 C12 4D6 sing 5 n n C14 O16 4D6 sing 6 n n C12 C11 4D6 sing 7 n n O16 B15 4D6 sing 8 n n C11 C34 4D6 sing 9 n n B15 O27 4D6 sing 10 n n B15 C34 4D6 sing 11 n n C34 N9 4D6 sing 12 n n N9 C7 4D6 sing 13 n n O8 C7 4D6 doub 14 n n S2 C1 4D6 sing 15 n y S2 C3 4D6 sing 16 n y C7 C6 4D6 sing 17 n n C1 C5 4D6 doub 18 n y C6 C3 4D6 sing 19 n n C3 C4 4D6 doub 20 n y C5 C4 4D6 sing 21 n y C1 H1 4D6 sing 22 n n C5 H2 4D6 sing 23 n n C11 H3 4D6 sing 24 n n C11 H4 4D6 sing 25 n n C12 H5 4D6 sing 26 n n C12 H6 4D6 sing 27 n n C14 H7 4D6 sing 28 n n C17 H8 4D6 sing 29 n n C17 H9 4D6 sing 30 n n O19 H10 4D6 sing 31 n n O27 H11 4D6 sing 32 n n C34 H12 4D6 sing 33 n n N9 H13 4D6 sing 34 n n C6 H14 4D6 sing 35 n n C6 H15 4D6 sing 36 n n C4 H16 4D6 sing 37 n n # _atom_sites.entry_id 8BTW _atom_sites.fract_transf_matrix[1][1] 0.018581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4D6 A 1 301 1 4D6 4D6 . C 3 GOL A 1 302 2 GOL GOL . D 3 GOL A 1 303 3 GOL GOL . E 3 GOL A 1 304 4 GOL GOL . F 3 GOL A 1 305 5 GOL GOL . G 4 PO4 A 1 306 6 PO4 PO4 . H 4 PO4 A 1 307 7 PO4 PO4 . I 5 NA A 1 308 1 NA NA . J 6 HOH A 1 401 77 HOH HOH . J 6 HOH A 2 402 96 HOH HOH . J 6 HOH A 3 403 155 HOH HOH . J 6 HOH A 4 404 192 HOH HOH . J 6 HOH A 5 405 45 HOH HOH . J 6 HOH A 6 406 125 HOH HOH . J 6 HOH A 7 407 177 HOH HOH . J 6 HOH A 8 408 89 HOH HOH . J 6 HOH A 9 409 100 HOH HOH . J 6 HOH A 10 410 105 HOH HOH . J 6 HOH A 11 411 46 HOH HOH . J 6 HOH A 12 412 66 HOH HOH . J 6 HOH A 13 413 64 HOH HOH . J 6 HOH A 14 414 95 HOH HOH . J 6 HOH A 15 415 21 HOH HOH . J 6 HOH A 16 416 91 HOH HOH . J 6 HOH A 17 417 31 HOH HOH . J 6 HOH A 18 418 28 HOH HOH . J 6 HOH A 19 419 152 HOH HOH . J 6 HOH A 20 420 26 HOH HOH . J 6 HOH A 21 421 148 HOH HOH . J 6 HOH A 22 422 108 HOH HOH . J 6 HOH A 23 423 130 HOH HOH . J 6 HOH A 24 424 98 HOH HOH . J 6 HOH A 25 425 40 HOH HOH . J 6 HOH A 26 426 81 HOH HOH . J 6 HOH A 27 427 160 HOH HOH . J 6 HOH A 28 428 74 HOH HOH . J 6 HOH A 29 429 185 HOH HOH . J 6 HOH A 30 430 47 HOH HOH . J 6 HOH A 31 431 115 HOH HOH . J 6 HOH A 32 432 133 HOH HOH . J 6 HOH A 33 433 135 HOH HOH . J 6 HOH A 34 434 20 HOH HOH . J 6 HOH A 35 435 54 HOH HOH . J 6 HOH A 36 436 167 HOH HOH . J 6 HOH A 37 437 104 HOH HOH . J 6 HOH A 38 438 39 HOH HOH . J 6 HOH A 39 439 90 HOH HOH . J 6 HOH A 40 440 17 HOH HOH . J 6 HOH A 41 441 162 HOH HOH . J 6 HOH A 42 442 85 HOH HOH . J 6 HOH A 43 443 137 HOH HOH . J 6 HOH A 44 444 67 HOH HOH . J 6 HOH A 45 445 51 HOH HOH . J 6 HOH A 46 446 84 HOH HOH . J 6 HOH A 47 447 43 HOH HOH . J 6 HOH A 48 448 35 HOH HOH . J 6 HOH A 49 449 42 HOH HOH . J 6 HOH A 50 450 23 HOH HOH . J 6 HOH A 51 451 114 HOH HOH . J 6 HOH A 52 452 117 HOH HOH . J 6 HOH A 53 453 25 HOH HOH . J 6 HOH A 54 454 36 HOH HOH . J 6 HOH A 55 455 169 HOH HOH . J 6 HOH A 56 456 80 HOH HOH . J 6 HOH A 57 457 79 HOH HOH . J 6 HOH A 58 458 15 HOH HOH . J 6 HOH A 59 459 61 HOH HOH . J 6 HOH A 60 460 107 HOH HOH . J 6 HOH A 61 461 156 HOH HOH . J 6 HOH A 62 462 8 HOH HOH . J 6 HOH A 63 463 19 HOH HOH . J 6 HOH A 64 464 87 HOH HOH . J 6 HOH A 65 465 52 HOH HOH . J 6 HOH A 66 466 12 HOH HOH . J 6 HOH A 67 467 88 HOH HOH . J 6 HOH A 68 468 49 HOH HOH . J 6 HOH A 69 469 82 HOH HOH . J 6 HOH A 70 470 14 HOH HOH . J 6 HOH A 71 471 16 HOH HOH . J 6 HOH A 72 472 159 HOH HOH . J 6 HOH A 73 473 9 HOH HOH . J 6 HOH A 74 474 7 HOH HOH . J 6 HOH A 75 475 132 HOH HOH . J 6 HOH A 76 476 149 HOH HOH . J 6 HOH A 77 477 63 HOH HOH . J 6 HOH A 78 478 187 HOH HOH . J 6 HOH A 79 479 174 HOH HOH . J 6 HOH A 80 480 116 HOH HOH . J 6 HOH A 81 481 73 HOH HOH . J 6 HOH A 82 482 32 HOH HOH . J 6 HOH A 83 483 92 HOH HOH . J 6 HOH A 84 484 93 HOH HOH . J 6 HOH A 85 485 158 HOH HOH . J 6 HOH A 86 486 48 HOH HOH . J 6 HOH A 87 487 123 HOH HOH . J 6 HOH A 88 488 75 HOH HOH . J 6 HOH A 89 489 6 HOH HOH . J 6 HOH A 90 490 27 HOH HOH . J 6 HOH A 91 491 76 HOH HOH . J 6 HOH A 92 492 120 HOH HOH . J 6 HOH A 93 493 147 HOH HOH . J 6 HOH A 94 494 44 HOH HOH . J 6 HOH A 95 495 94 HOH HOH . J 6 HOH A 96 496 56 HOH HOH . J 6 HOH A 97 497 102 HOH HOH . J 6 HOH A 98 498 3 HOH HOH . J 6 HOH A 99 499 11 HOH HOH . J 6 HOH A 100 500 126 HOH HOH . J 6 HOH A 101 501 121 HOH HOH . J 6 HOH A 102 502 69 HOH HOH . J 6 HOH A 103 503 10 HOH HOH . J 6 HOH A 104 504 154 HOH HOH . J 6 HOH A 105 505 129 HOH HOH . J 6 HOH A 106 506 34 HOH HOH . J 6 HOH A 107 507 70 HOH HOH . J 6 HOH A 108 508 37 HOH HOH . J 6 HOH A 109 509 127 HOH HOH . J 6 HOH A 110 510 111 HOH HOH . J 6 HOH A 111 511 86 HOH HOH . J 6 HOH A 112 512 13 HOH HOH . J 6 HOH A 113 513 18 HOH HOH . J 6 HOH A 114 514 119 HOH HOH . J 6 HOH A 115 515 83 HOH HOH . J 6 HOH A 116 516 183 HOH HOH . J 6 HOH A 117 517 58 HOH HOH . J 6 HOH A 118 518 71 HOH HOH . J 6 HOH A 119 519 57 HOH HOH . J 6 HOH A 120 520 50 HOH HOH . J 6 HOH A 121 521 53 HOH HOH . J 6 HOH A 122 522 110 HOH HOH . J 6 HOH A 123 523 180 HOH HOH . J 6 HOH A 124 524 99 HOH HOH . J 6 HOH A 125 525 65 HOH HOH . J 6 HOH A 126 526 68 HOH HOH . J 6 HOH A 127 527 22 HOH HOH . J 6 HOH A 128 528 173 HOH HOH . J 6 HOH A 129 529 186 HOH HOH . J 6 HOH A 130 530 60 HOH HOH . J 6 HOH A 131 531 134 HOH HOH . J 6 HOH A 132 532 33 HOH HOH . J 6 HOH A 133 533 4 HOH HOH . J 6 HOH A 134 534 59 HOH HOH . J 6 HOH A 135 535 101 HOH HOH . J 6 HOH A 136 536 62 HOH HOH . J 6 HOH A 137 537 24 HOH HOH . J 6 HOH A 138 538 5 HOH HOH . J 6 HOH A 139 539 113 HOH HOH . J 6 HOH A 140 540 29 HOH HOH . J 6 HOH A 141 541 164 HOH HOH . J 6 HOH A 142 542 41 HOH HOH . J 6 HOH A 143 543 55 HOH HOH . J 6 HOH A 144 544 97 HOH HOH . J 6 HOH A 145 545 131 HOH HOH . J 6 HOH A 146 546 106 HOH HOH . J 6 HOH A 147 547 38 HOH HOH . J 6 HOH A 148 548 191 HOH HOH . J 6 HOH A 149 549 150 HOH HOH . J 6 HOH A 150 550 175 HOH HOH . J 6 HOH A 151 551 188 HOH HOH . J 6 HOH A 152 552 166 HOH HOH . J 6 HOH A 153 553 176 HOH HOH . J 6 HOH A 154 554 72 HOH HOH . J 6 HOH A 155 555 122 HOH HOH . J 6 HOH A 156 556 145 HOH HOH . J 6 HOH A 157 557 178 HOH HOH . J 6 HOH A 158 558 109 HOH HOH . J 6 HOH A 159 559 153 HOH HOH . J 6 HOH A 160 560 171 HOH HOH . J 6 HOH A 161 561 172 HOH HOH . J 6 HOH A 162 562 165 HOH HOH . J 6 HOH A 163 563 146 HOH HOH . J 6 HOH A 164 564 138 HOH HOH . J 6 HOH A 165 565 118 HOH HOH . J 6 HOH A 166 566 163 HOH HOH . J 6 HOH A 167 567 142 HOH HOH . J 6 HOH A 168 568 181 HOH HOH . J 6 HOH A 169 569 168 HOH HOH . J 6 HOH A 170 570 193 HOH HOH . J 6 HOH A 171 571 141 HOH HOH . J 6 HOH A 172 572 140 HOH HOH . J 6 HOH A 173 573 161 HOH HOH . J 6 HOH A 174 574 157 HOH HOH . J 6 HOH A 175 575 78 HOH HOH . J 6 HOH A 176 576 179 HOH HOH . J 6 HOH A 177 577 143 HOH HOH . J 6 HOH A 178 578 190 HOH HOH . J 6 HOH A 179 579 103 HOH HOH . J 6 HOH A 180 580 182 HOH HOH . J 6 HOH A 181 581 189 HOH HOH . J 6 HOH A 182 582 128 HOH HOH . J 6 HOH A 183 583 184 HOH HOH . J 6 HOH A 184 584 144 HOH HOH . J 6 HOH A 185 585 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4D6 . . . B 2 -5.841 -12.692 24.553 1 19.38 ? C1 4D6 301 A 1 HETATM 2 C C3 4D6 . . . B 2 -4.041 -11.013 24.578 1 18.33 ? C3 4D6 301 A 1 HETATM 3 C C5 4D6 . . . B 2 -5.757 -12.073 25.756 1 20.36 ? C5 4D6 301 A 1 HETATM 4 C C7 4D6 . . . B 2 -3.037 -9.349 22.925 1 17.13 ? C7 4D6 301 A 1 HETATM 5 C C11 4D6 . . . B 2 -3.922 -9.391 19.948 1 14.82 ? C11 4D6 301 A 1 HETATM 6 C C12 4D6 . . . B 2 -4.896 -10.494 19.555 1 15.56 ? C12 4D6 301 A 1 HETATM 7 C C14 4D6 . . . B 2 -6.281 -9.932 19.293 1 15.18 ? C14 4D6 301 A 1 HETATM 8 C C17 4D6 . . . B 2 -7.298 -11.028 19.042 1 15.22 ? C17 4D6 301 A 1 HETATM 9 O O20 4D6 . . . B 2 -8.439 -9.787 17.383 1 14.77 ? O20 4D6 301 A 1 HETATM 10 C C18 4D6 . . . B 2 -8.563 -10.508 18.384 1 15.72 ? C18 4D6 301 A 1 HETATM 11 O O19 4D6 . . . B 2 -9.651 -10.817 18.892 1 15.97 ? O19 4D6 301 A 1 HETATM 12 O O16 4D6 . . . B 2 -6.732 -9.164 20.416 1 14.72 ? O16 4D6 301 A 1 HETATM 13 B B15 4D6 . . . B 2 -5.961 -8.15 20.885 1 15.11 ? B15 4D6 301 A 1 HETATM 14 O O27 4D6 . . . B 2 -6.551 -7.554 21.962 1 12.97 ? O27 4D6 301 A 1 HETATM 15 C C34 4D6 . . . B 2 -4.42 -8.58 21.147 1 14.68 ? C34 4D6 301 A 1 HETATM 16 N N9 4D6 . . . B 2 -4.255 -9.306 22.39 1 15.83 ? N9 4D6 301 A 1 HETATM 17 O O8 4D6 . . . B 2 -2.085 -8.76 22.416 1 16.15 ? O8 4D6 301 A 1 HETATM 18 C C6 4D6 . . . B 2 -2.883 -10.16 24.196 1 17.54 ? C6 4D6 301 A 1 HETATM 19 S S2 4D6 . . . B 2 -4.691 -12.117 23.495 1 22.29 ? S2 4D6 301 A 1 HETATM 20 C C4 4D6 . . . B 2 -4.711 -11.093 25.783 1 17.45 ? C4 4D6 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #