data_8BU0 # _model_server_result.job_id z9-fdonmaYbvtuAKSlwB5Q _model_server_result.datetime_utc '2024-10-18 21:29:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bu0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8BU0 # _exptl.entry_id 8BU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BU0 _cell.length_a 67.428 _cell.length_b 67.428 _cell.length_c 72.613 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 T N N ? 2 U N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N ALA 6 A ALA 1 1_555 A C SER 141 A SER 136 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? metalc ? metalc1 A OE1 GLN 19 A GLN 14 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A OD1 ASP 23 A ASP 18 1_555 L CA CA . A CA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A OD2 ASP 23 A ASP 18 1_555 L CA CA . A CA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OE1 GLU 24 A GLU 19 1_555 L CA CA . A CA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 A OE2 GLU 24 A GLU 19 1_555 L CA CA . A CA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 A OD1 ASP 55 A ASP 50 1_555 H CA CA . A CA 307 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc7 A OD2 ASP 55 A ASP 50 1_555 H CA CA . A CA 307 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc8 A OD1 ASP 57 A ASP 52 1_555 H CA CA . A CA 307 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc9 A OD2 ASP 57 A ASP 52 1_555 H CA CA . A CA 307 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc10 A OD2 ASP 57 A ASP 52 1_555 I CA CA . A CA 308 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 A OE2 GLU 58 A GLU 53 1_555 I CA CA . A CA 308 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc12 A OE1 GLU 58 A GLU 53 1_555 J CA CA . A CA 309 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc13 A OE2 GLU 58 A GLU 53 1_555 J CA CA . A CA 309 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc14 A OE1 GLU 61 A GLU 56 1_555 J CA CA . A CA 309 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc15 A OD2 ASP 125 A ASP 120 1_555 H CA CA . A CA 307 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc16 A OD1 ASP 125 A ASP 120 1_555 I CA CA . A CA 308 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc17 A OD2 ASP 125 A ASP 120 1_555 I CA CA . A CA 308 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc18 A O ARG 140 A ARG 135 1_555 K CA CA . A CA 310 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc19 H CA CA . A CA 307 1_555 W O HOH . A HOH 465 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc20 H CA CA . A CA 307 1_555 W O HOH . A HOH 477 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc21 H CA CA . A CA 307 1_555 W O HOH . A HOH 479 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc22 I CA CA . A CA 308 1_555 W O HOH . A HOH 461 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc23 I CA CA . A CA 308 1_555 W O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc24 I CA CA . A CA 308 1_555 W O HOH . A HOH 482 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc25 J CA CA . A CA 309 1_555 W O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc26 J CA CA . A CA 309 1_555 W O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc27 J CA CA . A CA 309 1_555 W O HOH . A HOH 472 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc28 K CA CA . A CA 310 1_555 W O HOH . A HOH 427 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc29 K CA CA . A CA 310 1_555 W O HOH . A HOH 435 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc30 L CA CA . A CA 311 1_555 W O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc31 L CA CA . A CA 311 1_555 W O HOH . A HOH 430 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc32 L CA CA . A CA 311 1_555 W O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc33 L CA CA . A CA 311 1_555 W O HOH . A HOH 467 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc34 M CA CA . A CA 312 1_555 W O HOH . A HOH 415 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc35 M CA CA . A CA 312 1_555 W O HOH . A HOH 469 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc36 M CA CA . A CA 312 1_555 W O HOH . A HOH 470 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 8BU0 _atom_sites.fract_transf_matrix[1][1] 0.014831 _atom_sites.fract_transf_matrix[1][2] 0.008562 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 203 ACT ACT . C 2 ACT A 1 302 403 ACT ACT . D 2 ACT A 1 303 503 ACT ACT . E 2 ACT A 1 304 703 ACT ACT . F 2 ACT A 1 305 803 ACT ACT . G 2 ACT A 1 306 903 ACT ACT . H 3 CA A 1 307 1 CA CA . I 3 CA A 1 308 2 CA CA . J 3 CA A 1 309 3 CA CA . K 3 CA A 1 310 4 CA CA . L 3 CA A 1 311 5 CA CA . M 3 CA A 1 312 6 CA CA . N 4 MPD A 1 313 1 MPD MPD . O 4 MPD A 1 314 2 MPD MPD . P 4 MPD A 1 315 3 MPD MPD . Q 4 MPD A 1 316 4 MPD MPD . R 4 MPD A 1 317 6 MPD MPD . S 5 CL A 1 318 1 CL CL . T 2 ACT A 1 319 1 ACT ACT . U 2 ACT A 1 320 2 ACT ACT . V 2 ACT A 1 321 3 ACT ACT . W 6 HOH A 1 401 85 HOH HOH . W 6 HOH A 2 402 75 HOH HOH . W 6 HOH A 3 403 69 HOH HOH . W 6 HOH A 4 404 45 HOH HOH . W 6 HOH A 5 405 86 HOH HOH . W 6 HOH A 6 406 49 HOH HOH . W 6 HOH A 7 407 12 HOH HOH . W 6 HOH A 8 408 27 HOH HOH . W 6 HOH A 9 409 53 HOH HOH . W 6 HOH A 10 410 92 HOH HOH . W 6 HOH A 11 411 81 HOH HOH . W 6 HOH A 12 412 93 HOH HOH . W 6 HOH A 13 413 47 HOH HOH . W 6 HOH A 14 414 18 HOH HOH . W 6 HOH A 15 415 38 HOH HOH . W 6 HOH A 16 416 46 HOH HOH . W 6 HOH A 17 417 78 HOH HOH . W 6 HOH A 18 418 26 HOH HOH . W 6 HOH A 19 419 44 HOH HOH . W 6 HOH A 20 420 83 HOH HOH . W 6 HOH A 21 421 16 HOH HOH . W 6 HOH A 22 422 89 HOH HOH . W 6 HOH A 23 423 40 HOH HOH . W 6 HOH A 24 424 36 HOH HOH . W 6 HOH A 25 425 54 HOH HOH . W 6 HOH A 26 426 20 HOH HOH . W 6 HOH A 27 427 11 HOH HOH . W 6 HOH A 28 428 31 HOH HOH . W 6 HOH A 29 429 25 HOH HOH . W 6 HOH A 30 430 70 HOH HOH . W 6 HOH A 31 431 15 HOH HOH . W 6 HOH A 32 432 50 HOH HOH . W 6 HOH A 33 433 32 HOH HOH . W 6 HOH A 34 434 64 HOH HOH . W 6 HOH A 35 435 10 HOH HOH . W 6 HOH A 36 436 52 HOH HOH . W 6 HOH A 37 437 35 HOH HOH . W 6 HOH A 38 438 22 HOH HOH . W 6 HOH A 39 439 96 HOH HOH . W 6 HOH A 40 440 72 HOH HOH . W 6 HOH A 41 441 51 HOH HOH . W 6 HOH A 42 442 41 HOH HOH . W 6 HOH A 43 443 30 HOH HOH . W 6 HOH A 44 444 33 HOH HOH . W 6 HOH A 45 445 19 HOH HOH . W 6 HOH A 46 446 34 HOH HOH . W 6 HOH A 47 447 24 HOH HOH . W 6 HOH A 48 448 17 HOH HOH . W 6 HOH A 49 449 43 HOH HOH . W 6 HOH A 50 450 21 HOH HOH . W 6 HOH A 51 451 39 HOH HOH . W 6 HOH A 52 452 65 HOH HOH . W 6 HOH A 53 453 90 HOH HOH . W 6 HOH A 54 454 58 HOH HOH . W 6 HOH A 55 455 29 HOH HOH . W 6 HOH A 56 456 66 HOH HOH . W 6 HOH A 57 457 28 HOH HOH . W 6 HOH A 58 458 8 HOH HOH . W 6 HOH A 59 459 9 HOH HOH . W 6 HOH A 60 460 71 HOH HOH . W 6 HOH A 61 461 5 HOH HOH . W 6 HOH A 62 462 48 HOH HOH . W 6 HOH A 63 463 55 HOH HOH . W 6 HOH A 64 464 42 HOH HOH . W 6 HOH A 65 465 1 HOH HOH . W 6 HOH A 66 466 87 HOH HOH . W 6 HOH A 67 467 13 HOH HOH . W 6 HOH A 68 468 77 HOH HOH . W 6 HOH A 69 469 82 HOH HOH . W 6 HOH A 70 470 67 HOH HOH . W 6 HOH A 71 471 6 HOH HOH . W 6 HOH A 72 472 7 HOH HOH . W 6 HOH A 73 473 57 HOH HOH . W 6 HOH A 74 474 63 HOH HOH . W 6 HOH A 75 475 59 HOH HOH . W 6 HOH A 76 476 80 HOH HOH . W 6 HOH A 77 477 3 HOH HOH . W 6 HOH A 78 478 94 HOH HOH . W 6 HOH A 79 479 2 HOH HOH . W 6 HOH A 80 480 91 HOH HOH . W 6 HOH A 81 481 79 HOH HOH . W 6 HOH A 82 482 4 HOH HOH . W 6 HOH A 83 483 37 HOH HOH . W 6 HOH A 84 484 95 HOH HOH . W 6 HOH A 85 485 84 HOH HOH . W 6 HOH A 86 486 56 HOH HOH . W 6 HOH A 87 487 74 HOH HOH . W 6 HOH A 88 488 60 HOH HOH . W 6 HOH A 89 489 88 HOH HOH . W 6 HOH A 90 490 68 HOH HOH . W 6 HOH A 91 491 14 HOH HOH . W 6 HOH A 92 492 76 HOH HOH . W 6 HOH A 93 493 23 HOH HOH . W 6 HOH A 94 494 62 HOH HOH . W 6 HOH A 95 495 73 HOH HOH . W 6 HOH A 96 496 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 2 -48.983 31.094 15.509 1 53.16 ? C ACT 303 A 1 HETATM 2 O O ACT . . . D 2 -48.5 31.731 14.563 1 55.44 ? O ACT 303 A 1 HETATM 3 O OXT ACT . . . D 2 -48.981 31.494 16.707 1 56.3 ? OXT ACT 303 A 1 HETATM 4 C CH3 ACT . . . D 2 -49.536 29.714 15.202 1 50.54 ? CH3 ACT 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #