data_8BU1
#
_model_server_result.job_id            mkeZywJ5BUwOFhPSL-VF0A 
_model_server_result.datetime_utc      '2024-11-07 08:49:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    8BU1 
#
_exptl.entry_id    8BU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.372 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU1 
_cell.length_a            249.447 
_cell.length_b            249.447 
_cell.length_c            218.45 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T,U 2 1 
G,H,I,V,W,X,Y,Z,AA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 S N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C21 H22 Cl2 N10 O' 
_chem_comp.formula_weight    501.372 
_chem_comp.id                RQL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 N8 RQL sing 288 n n 
N8 N9 RQL sing 289 n y 
N8 C19 RQL sing 290 n y 
N9 C21 RQL doub 291 n y 
C19 C18 RQL doub 292 n y 
C21 C18 RQL sing 293 n y 
C18 N7 RQL sing 294 n n 
C17 N7 RQL sing 295 n y 
C17 N6 RQL doub 296 n y 
N7 C15 RQL sing 297 n y 
N6 C16 RQL sing 298 n y 
C15 C16 RQL doub 299 n y 
C15 N5 RQL sing 300 n y 
C16 C9 RQL sing 301 n y 
N5 C10 RQL doub 302 n y 
C9 N2 RQL sing 303 n n 
C9 N3 RQL doub 304 n y 
C10 N3 RQL sing 305 n y 
C10 N4 RQL sing 306 n n 
N2 C8 RQL sing 307 n n 
C13 C12 RQL sing 308 n n 
N4 C11 RQL sing 309 n n 
C12 C11 RQL sing 310 n n 
C8 C7 RQL sing 311 n n 
C11 C14 RQL sing 312 n n 
C14 O1 RQL sing 313 n n 
C7 N10 RQL doub 314 n y 
C7 N1 RQL sing 315 n y 
N10 C5 RQL sing 316 n y 
N1 C6 RQL sing 317 n y 
C5 C6 RQL doub 318 n y 
C5 C4 RQL sing 319 n y 
C6 C3 RQL sing 320 n y 
C4 C1 RQL doub 321 n y 
C3 C2 RQL doub 322 n y 
C1 C2 RQL sing 323 n y 
C1 CL1 RQL sing 324 n n 
C2 CL2 RQL sing 325 n n 
C3 H1 RQL sing 326 n n 
C4 H2 RQL sing 327 n n 
C8 H5 RQL sing 328 n n 
C8 H4 RQL sing 329 n n 
C17 H17 RQL sing 330 n n 
C14 H14 RQL sing 331 n n 
C14 H15 RQL sing 332 n n 
C13 H11 RQL sing 333 n n 
C13 H12 RQL sing 334 n n 
C13 H13 RQL sing 335 n n 
C12 H10 RQL sing 336 n n 
C12 H9 RQL sing 337 n n 
C11 H8 RQL sing 338 n n 
C19 H18 RQL sing 339 n n 
C20 H20 RQL sing 340 n n 
C20 H21 RQL sing 341 n n 
C20 H19 RQL sing 342 n n 
C21 H22 RQL sing 343 n n 
N1 H3 RQL sing 344 n n 
N2 H6 RQL sing 345 n n 
N4 H7 RQL sing 346 n n 
O1 H16 RQL sing 347 n n 
#
_atom_sites.entry_id                     8BU1 
_atom_sites.fract_transf_matrix[1][1]    0.004009 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 GOL A 1 1201 1201 GOL GOL . 
K 4 GOL A 1 1202 1202 GOL GOL . 
L 4 GOL A 1 1203 1203 GOL GOL . 
M 5 RQL B 1 1101 1101 RQL D17 . 
N 4 GOL C 1 301 301 GOL GOL . 
O 4 GOL C 1 302 302 GOL GOL . 
P 4 GOL D 1 1201 1201 GOL GOL . 
Q 4 GOL D 1 1202 1202 GOL GOL . 
R 4 GOL D 1 1203 1203 GOL GOL . 
S 5 RQL E 1 1101 1101 RQL D17 . 
T 4 GOL F 1 301 301 GOL GOL . 
U 4 GOL F 1 302 302 GOL GOL . 
V 4 GOL G 1 1201 1201 GOL GOL . 
W 5 RQL H 1 1101 1101 RQL D17 . 
X 4 GOL H 1 1102 1102 GOL GOL . 
Y 4 GOL H 1 1103 1103 GOL GOL . 
Z 4 GOL I 1 301 301 GOL GOL . 
AA 4 GOL I 1 302 302 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RQL . . . M 5 -64.618 25.923 1.291 1 88.58 ? C2 RQL 1101 B 1 
HETATM 2 C C3 RQL . . . M 5 -63.747 25.223 0.475 1 92.74 ? C3 RQL 1101 B 1 
HETATM 3 C C4 RQL . . . M 5 -66.554 25.05 0.124 1 83.8 ? C4 RQL 1101 B 1 
HETATM 4 C C5 RQL . . . M 5 -65.687 24.341 -0.706 1 84.61 ? C5 RQL 1101 B 1 
HETATM 5 C C6 RQL . . . M 5 -64.305 24.435 -0.522 1 88.07 ? C6 RQL 1101 B 1 
HETATM 6 C C7 RQL . . . M 5 -64.766 23.091 -2.196 1 87.42 ? C7 RQL 1101 B 1 
HETATM 7 C C8 RQL . . . M 5 -64.521 22.154 -3.339 1 83.73 ? C8 RQL 1101 B 1 
HETATM 8 C C10 RQL . . . M 5 -61.349 23.838 -5.536 1 80.71 ? C10 RQL 1101 B 1 
HETATM 9 C C17 RQL . . . M 5 -64.282 23.79 -8.766 1 84.41 ? C17 RQL 1101 B 1 
HETATM 10 C C16 RQL . . . M 5 -63.742 23.5 -6.735 1 79.4 ? C16 RQL 1101 B 1 
HETATM 11 C C15 RQL . . . M 5 -62.602 23.924 -7.383 1 79.95 ? C15 RQL 1101 B 1 
HETATM 12 C C14 RQL . . . M 5 -59.962 23.901 -2.389 1 87.8 ? C14 RQL 1101 B 1 
HETATM 13 C C13 RQL . . . M 5 -58.725 26.332 -5.175 1 74.93 ? C13 RQL 1101 B 1 
HETATM 14 C C12 RQL . . . M 5 -59.159 25.951 -3.764 1 83.1 ? C12 RQL 1101 B 1 
HETATM 15 C C11 RQL . . . M 5 -60.013 24.697 -3.68 1 79.19 ? C11 RQL 1101 B 1 
HETATM 16 C C1 RQL . . . M 5 -66.012 25.838 1.117 1 86.47 ? C1 RQL 1101 B 1 
HETATM 17 C C18 RQL . . . M 5 -62.122 24.554 -9.796 1 72.19 ? C18 RQL 1101 B 1 
HETATM 18 C C19 RQL . . . M 5 -61.757 26.012 -9.634 1 81.05 ? C19 RQL 1101 B 1 
HETATM 19 C C21 RQL . . . M 5 -60.887 23.704 -9.969 1 79.75 ? C21 RQL 1101 B 1 
HETATM 20 C C9 RQL . . . M 5 -63.608 23.247 -5.357 1 76.35 ? C9 RQL 1101 B 1 
HETATM 21 N N1 RQL . . . M 5 -63.755 23.626 -1.488 1 89.49 ? N1 RQL 1101 B 1 
HETATM 22 N N10 RQL . . . M 5 -65.955 23.482 -1.769 1 84.28 ? N10 RQL 1101 B 1 
HETATM 23 N N2 RQL . . . M 5 -64.654 22.823 -4.615 1 78 ? N2 RQL 1101 B 1 
HETATM 24 N N3 RQL . . . M 5 -62.399 23.428 -4.784 1 74.4 ? N3 RQL 1101 B 1 
HETATM 25 N N4 RQL . . . M 5 -60.155 23.997 -4.948 1 78.83 ? N4 RQL 1101 B 1 
HETATM 26 N N5 RQL . . . M 5 -61.39 24.116 -6.851 1 84.89 ? N5 RQL 1101 B 1 
HETATM 27 N N6 RQL . . . M 5 -64.811 23.418 -7.622 1 82.4 ? N6 RQL 1101 B 1 
HETATM 28 N N7 RQL . . . M 5 -62.959 24.097 -8.687 1 79.11 ? N7 RQL 1101 B 1 
HETATM 29 O O1 RQL . . . M 5 -60.975 22.92 -2.405 1 95.04 ? O1 RQL 1101 B 1 
HETATM 30 CL CL1 RQL . . . M 5 -67.063 26.737 2.164 1 88.09 ? CL1 RQL 1101 B 1 
HETATM 31 CL CL2 RQL . . . M 5 -63.967 26.923 2.548 1 105.05 ? CL2 RQL 1101 B 1 
HETATM 32 H H1 RQL . . . M 5 -62.824 25.278 0.59 0 111.7 ? H1 RQL 1101 B 1 
HETATM 33 H H2 RQL . . . M 5 -67.477 24.992 0.009 0 100.98 ? H2 RQL 1101 B 1 
HETATM 34 H H5 RQL . . . M 5 -63.625 21.782 -3.264 0 100.89 ? H5 RQL 1101 B 1 
HETATM 35 H H4 RQL . . . M 5 -65.156 21.419 -3.295 0 100.89 ? H4 RQL 1101 B 1 
HETATM 36 H H17 RQL . . . M 5 -64.771 23.842 -9.577 0 101.71 ? H17 RQL 1101 B 1 
HETATM 37 H H14 RQL . . . M 5 -59.083 23.475 -2.298 0 105.77 ? H14 RQL 1101 B 1 
HETATM 38 H H15 RQL . . . M 5 -60.089 24.503 -1.625 0 105.77 ? H15 RQL 1101 B 1 
HETATM 39 H H11 RQL . . . M 5 -58.174 27.133 -5.14 0 90.33 ? H11 RQL 1101 B 1 
HETATM 40 H H12 RQL . . . M 5 -58.213 25.604 -5.566 0 90.33 ? H12 RQL 1101 B 1 
HETATM 41 H H13 RQL . . . M 5 -59.512 26.504 -5.721 0 90.33 ? H13 RQL 1101 B 1 
HETATM 42 H H10 RQL . . . M 5 -58.357 25.819 -3.215 0 100.14 ? H10 RQL 1101 B 1 
HETATM 43 H H9 RQL . . . M 5 -59.665 26.698 -3.379 0 100.14 ? H9 RQL 1101 B 1 
HETATM 44 H H8 RQL . . . M 5 -60.961 25.001 -3.594 0 95.44 ? H8 RQL 1101 B 1 
HETATM 45 H H18 RQL . . . M 5 -62.568 26.542 -9.552 0 97.68 ? H18 RQL 1101 B 1 
HETATM 46 H H3 RQL . . . M 5 -62.895 23.482 -1.62 0 107.81 ? H3 RQL 1101 B 1 
HETATM 47 H H6 RQL . . . M 5 -65.456 22.961 -4.923 0 94.02 ? H6 RQL 1101 B 1 
HETATM 48 H H7 RQL . . . M 5 -59.437 23.671 -5.337 0 95.01 ? H7 RQL 1101 B 1 
HETATM 49 H H16 RQL . . . M 5 -61.004 22.551 -1.644 0 114.47 ? H16 RQL 1101 B 1 
#
_model_server_stats.io_time_ms              137 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    83 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           49 
#