data_8BU1 # _model_server_result.job_id f2i9SVbROpFQ40DjsrYkSA _model_server_result.datetime_utc '2024-11-07 08:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":301}' # _entry.id 8BU1 # _exptl.entry_id 8BU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BU1 _cell.length_a 249.447 _cell.length_b 249.447 _cell.length_c 218.45 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O 1 1 D,E,F,P,Q,R,S,T,U 2 1 G,H,I,V,W,X,Y,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8BU1 _atom_sites.fract_transf_matrix[1][1] 0.004009 _atom_sites.fract_transf_matrix[1][2] 0.002315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 GOL A 1 1201 1201 GOL GOL . K 4 GOL A 1 1202 1202 GOL GOL . L 4 GOL A 1 1203 1203 GOL GOL . M 5 RQL B 1 1101 1101 RQL D17 . N 4 GOL C 1 301 301 GOL GOL . O 4 GOL C 1 302 302 GOL GOL . P 4 GOL D 1 1201 1201 GOL GOL . Q 4 GOL D 1 1202 1202 GOL GOL . R 4 GOL D 1 1203 1203 GOL GOL . S 5 RQL E 1 1101 1101 RQL D17 . T 4 GOL F 1 301 301 GOL GOL . U 4 GOL F 1 302 302 GOL GOL . V 4 GOL G 1 1201 1201 GOL GOL . W 5 RQL H 1 1101 1101 RQL D17 . X 4 GOL H 1 1102 1102 GOL GOL . Y 4 GOL H 1 1103 1103 GOL GOL . Z 4 GOL I 1 301 301 GOL GOL . AA 4 GOL I 1 302 302 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Z 4 -99.437 -6.175 42.965 1 96.19 ? C1 GOL 301 I 1 HETATM 2 O O1 GOL . . . Z 4 -100.653 -6.492 42.336 1 94.98 ? O1 GOL 301 I 1 HETATM 3 C C2 GOL . . . Z 4 -98.353 -7.095 42.375 1 97.16 ? C2 GOL 301 I 1 HETATM 4 O O2 GOL . . . Z 4 -97.083 -6.761 42.844 1 102.08 ? O2 GOL 301 I 1 HETATM 5 C C3 GOL . . . Z 4 -98.76 -8.523 42.773 1 94.48 ? C3 GOL 301 I 1 HETATM 6 O O3 GOL . . . Z 4 -97.897 -9.4 42.082 1 85.93 ? O3 GOL 301 I 1 HETATM 7 H H11 GOL . . . Z 4 -99.473 -6.301 43.926 0 115.85 ? H11 GOL 301 I 1 HETATM 8 H H12 GOL . . . Z 4 -99.179 -5.25 42.827 0 115.85 ? H12 GOL 301 I 1 HETATM 9 H HO1 GOL . . . Z 4 -101.245 -5.99 42.679 0 114.39 ? HO1 GOL 301 I 1 HETATM 10 H H2 GOL . . . Z 4 -98.325 -7.005 41.409 0 117.01 ? H2 GOL 301 I 1 HETATM 11 H HO2 GOL . . . Z 4 -96.619 -7.476 42.883 0 122.91 ? HO2 GOL 301 I 1 HETATM 12 H H31 GOL . . . Z 4 -99.696 -8.655 42.557 0 113.79 ? H31 GOL 301 I 1 HETATM 13 H H32 GOL . . . Z 4 -98.705 -8.608 43.738 0 113.79 ? H32 GOL 301 I 1 HETATM 14 H HO3 GOL . . . Z 4 -98.077 -10.192 42.342 0 103.52 ? HO3 GOL 301 I 1 # _model_server_stats.io_time_ms 166 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #