data_8BU3
#
_model_server_result.job_id            HCjubPEPMP1NoH9rcFreHg 
_model_server_result.datetime_utc      '2024-11-05 00:40:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1101}' 
#
_entry.id    8BU3 
#
_exptl.entry_id    8BU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.517 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-morpholin-4-yl-9-propan-2-yl-~{N}-[(4-pyridin-2-ylphenyl)methyl]purin-6-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU3 
_cell.length_a            249.61 
_cell.length_b            249.61 
_cell.length_c            217.866 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q 1 1 
D,E,F,R,S,T,U,V,W,X 2 1 
G,H,I,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 V N N 
? 6 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C24 H27 N7 O' 
_chem_comp.formula_weight    429.517 
_chem_comp.id                RSI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-morpholin-4-yl-9-propan-2-yl-~{N}-[(4-pyridin-2-ylphenyl)methyl]purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C1 RSI doub 284 n y 
C5 C4 RSI sing 285 n y 
C1 N1 RSI sing 286 n y 
C4 C3 RSI doub 287 n y 
N1 C2 RSI doub 288 n y 
C3 C2 RSI sing 289 n y 
C2 C6 RSI sing 290 n n 
C6 C7 RSI doub 291 n y 
C6 C11 RSI sing 292 n y 
C7 C8 RSI sing 293 n y 
C11 C10 RSI doub 294 n y 
C8 C9 RSI doub 295 n y 
C10 C9 RSI sing 296 n y 
C9 C12 RSI sing 297 n n 
C22 O1 RSI sing 298 n n 
C22 C21 RSI sing 299 n n 
O1 C23 RSI sing 300 n n 
C21 N7 RSI sing 301 n n 
C12 N2 RSI sing 302 n n 
C23 C24 RSI sing 303 n n 
N7 C24 RSI sing 304 n n 
N7 C14 RSI sing 305 n n 
N2 C13 RSI sing 306 n n 
N3 C14 RSI doub 307 n y 
N3 C13 RSI sing 308 n y 
C14 N4 RSI sing 309 n y 
C13 C16 RSI doub 310 n y 
N4 C15 RSI doub 311 n y 
C16 C15 RSI sing 312 n y 
C16 N5 RSI sing 313 n y 
C15 N6 RSI sing 314 n y 
N5 C17 RSI doub 315 n y 
N6 C17 RSI sing 316 n y 
N6 C18 RSI sing 317 n n 
C20 C18 RSI sing 318 n n 
C18 C19 RSI sing 319 n n 
C10 H101 RSI sing 320 n n 
C8 H81 RSI sing 321 n n 
N2 H21 RSI sing 322 n n 
C7 H71 RSI sing 323 n n 
C1 H11 RSI sing 324 n n 
C3 H31 RSI sing 325 n n 
C4 H41 RSI sing 326 n n 
C5 H51 RSI sing 327 n n 
C11 H111 RSI sing 328 n n 
C12 H121 RSI sing 329 n n 
C12 H122 RSI sing 330 n n 
C17 H171 RSI sing 331 n n 
C18 H181 RSI sing 332 n n 
C19 H192 RSI sing 333 n n 
C19 H193 RSI sing 334 n n 
C19 H191 RSI sing 335 n n 
C20 H201 RSI sing 336 n n 
C20 H203 RSI sing 337 n n 
C20 H202 RSI sing 338 n n 
C21 H212 RSI sing 339 n n 
C21 H211 RSI sing 340 n n 
C22 H221 RSI sing 341 n n 
C22 H222 RSI sing 342 n n 
C23 H232 RSI sing 343 n n 
C23 H231 RSI sing 344 n n 
C24 H241 RSI sing 345 n n 
C24 H242 RSI sing 346 n n 
#
_atom_sites.entry_id                     8BU3 
_atom_sites.fract_transf_matrix[1][1]    0.004006 
_atom_sites.fract_transf_matrix[1][2]    0.002313 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 EDO A 1 1201 1201 EDO EDO . 
K 5 SO4 A 1 1202 3 SO4 SO4 . 
L 5 SO4 A 1 1203 5 SO4 SO4 . 
M 5 SO4 A 1 1204 27 SO4 SO4 . 
N 6 RSI B 1 1101 1101 RSI D19 . 
O 5 SO4 C 1 301 4 SO4 SO4 . 
P 5 SO4 C 1 302 16 SO4 SO4 . 
Q 5 SO4 C 1 303 30 SO4 SO4 . 
R 4 EDO D 1 1201 1201 EDO EDO . 
S 5 SO4 D 1 1202 2 SO4 SO4 . 
T 5 SO4 D 1 1203 7 SO4 SO4 . 
U 5 SO4 D 1 1204 29 SO4 SO4 . 
V 6 RSI E 1 1101 1101 RSI D19 . 
W 5 SO4 F 1 301 17 SO4 SO4 . 
X 5 SO4 F 1 302 31 SO4 SO4 . 
Y 5 SO4 G 1 1201 1 SO4 SO4 . 
Z 5 SO4 G 1 1202 8 SO4 SO4 . 
AA 5 SO4 G 1 1203 13 SO4 SO4 . 
BA 5 SO4 G 1 1204 14 SO4 SO4 . 
CA 6 RSI H 1 1101 1101 RSI D19 . 
DA 5 SO4 H 1 1102 33 SO4 SO4 . 
EA 5 SO4 H 1 1103 34 SO4 SO4 . 
FA 5 SO4 I 1 301 12 SO4 SO4 . 
GA 5 SO4 I 1 302 18 SO4 SO4 . 
HA 5 SO4 I 1 303 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 RSI . . . N 6 13.124 68.32 -33.522 1 128.59 ? C10 RSI 1101 B 1 
HETATM 2 C C9 RSI . . . N 6 12.714 67.015 -33.333 1 128.27 ? C9 RSI 1101 B 1 
HETATM 3 C C8 RSI . . . N 6 11.812 66.426 -34.207 1 127.32 ? C8 RSI 1101 B 1 
HETATM 4 N N2 RSI . . . N 6 12.84 66.905 -30.933 1 124.25 ? N2 RSI 1101 B 1 
HETATM 5 C C7 RSI . . . N 6 11.307 67.173 -35.271 1 129.19 ? C7 RSI 1101 B 1 
HETATM 6 N N1 RSI . . . N 6 10.043 68.94 -37.258 1 127.89 ? N1 RSI 1101 B 1 
HETATM 7 C C1 RSI . . . N 6 9.545 69.667 -38.266 1 129.23 ? C1 RSI 1101 B 1 
HETATM 8 C C2 RSI . . . N 6 11.174 69.302 -36.63 1 129.04 ? C2 RSI 1101 B 1 
HETATM 9 C C3 RSI . . . N 6 11.826 70.464 -37.018 1 129.09 ? C3 RSI 1101 B 1 
HETATM 10 C C4 RSI . . . N 6 11.343 71.213 -38.041 1 131.31 ? C4 RSI 1101 B 1 
HETATM 11 C C5 RSI . . . N 6 10.205 70.824 -38.667 1 130.8 ? C5 RSI 1101 B 1 
HETATM 12 C C6 RSI . . . N 6 11.73 68.479 -35.469 1 128.45 ? C6 RSI 1101 B 1 
HETATM 13 O O1 RSI . . . N 6 7.042 63.601 -33.129 1 132.15 ? O1 RSI 1101 B 1 
HETATM 14 C C11 RSI . . . N 6 12.636 69.052 -34.588 1 128.74 ? C11 RSI 1101 B 1 
HETATM 15 C C12 RSI . . . N 6 13.277 66.236 -32.15 1 127.29 ? C12 RSI 1101 B 1 
HETATM 16 C C13 RSI . . . N 6 11.708 66.325 -30.243 1 121.56 ? C13 RSI 1101 B 1 
HETATM 17 C C14 RSI . . . N 6 9.84 64.962 -30.331 1 118.69 ? C14 RSI 1101 B 1 
HETATM 18 C C15 RSI . . . N 6 10.313 65.915 -28.382 1 118.02 ? C15 RSI 1101 B 1 
HETATM 19 C C16 RSI . . . N 6 11.439 66.547 -28.916 1 120.76 ? C16 RSI 1101 B 1 
HETATM 20 C C17 RSI . . . N 6 11.271 67.083 -26.814 1 120.63 ? C17 RSI 1101 B 1 
HETATM 21 C C18 RSI . . . N 6 9.372 65.925 -26.159 1 119.02 ? C18 RSI 1101 B 1 
HETATM 22 C C19 RSI . . . N 6 9.481 64.44 -25.794 1 122.16 ? C19 RSI 1101 B 1 
HETATM 23 C C20 RSI . . . N 6 7.94 66.244 -26.6 1 119.88 ? C20 RSI 1101 B 1 
HETATM 24 C C21 RSI . . . N 6 9.278 64.273 -32.558 1 120.87 ? C21 RSI 1101 B 1 
HETATM 25 C C22 RSI . . . N 6 8.393 63.342 -33.403 1 122.53 ? C22 RSI 1101 B 1 
HETATM 26 C C23 RSI . . . N 6 6.722 63.443 -31.777 1 123.78 ? C23 RSI 1101 B 1 
HETATM 27 C C24 RSI . . . N 6 7.592 64.351 -30.902 1 118.8 ? C24 RSI 1101 B 1 
HETATM 28 N N3 RSI . . . N 6 10.889 65.535 -30.924 1 119.13 ? N3 RSI 1101 B 1 
HETATM 29 N N4 RSI . . . N 6 9.521 65.116 -29.043 1 117.8 ? N4 RSI 1101 B 1 
HETATM 30 N N5 RSI . . . N 6 12.025 67.285 -27.9 1 122.51 ? N5 RSI 1101 B 1 
HETATM 31 N N6 RSI . . . N 6 10.341 66.304 -27.175 1 117.66 ? N6 RSI 1101 B 1 
HETATM 32 N N7 RSI . . . N 6 9.003 64.116 -31.136 1 117.57 ? N7 RSI 1101 B 1 
HETATM 33 H H101 RSI . . . N 6 13.828 68.771 -32.833 0 154.31 ? H101 RSI 1101 B 1 
HETATM 34 H H81 RSI . . . N 6 11.504 65.398 -34.065 0 152.79 ? H81 RSI 1101 B 1 
HETATM 35 H H21 RSI . . . N 6 13.3 67.725 -30.59 0 149.1 ? H21 RSI 1101 B 1 
HETATM 36 H H71 RSI . . . N 6 10.583 66.732 -35.945 0 155.03 ? H71 RSI 1101 B 1 
HETATM 37 H H11 RSI . . . N 6 8.635 69.357 -38.766 0 155.08 ? H11 RSI 1101 B 1 
HETATM 38 H H31 RSI . . . N 6 12.726 70.774 -36.501 0 154.9 ? H31 RSI 1101 B 1 
HETATM 39 H H41 RSI . . . N 6 11.86 72.113 -38.353 0 157.57 ? H41 RSI 1101 B 1 
HETATM 40 H H51 RSI . . . N 6 9.808 71.416 -39.482 0 156.96 ? H51 RSI 1101 B 1 
HETATM 41 H H111 RSI . . . N 6 12.961 70.074 -34.736 0 154.49 ? H111 RSI 1101 B 1 
HETATM 42 H H121 RSI . . . N 6 12.904 65.217 -32.167 0 152.75 ? H121 RSI 1101 B 1 
HETATM 43 H H122 RSI . . . N 6 14.361 66.225 -32.198 0 152.75 ? H122 RSI 1101 B 1 
HETATM 44 H H171 RSI . . . N 6 11.425 67.502 -25.827 0 144.76 ? H171 RSI 1101 B 1 
HETATM 45 H H181 RSI . . . N 6 9.604 66.513 -25.28 0 142.82 ? H181 RSI 1101 B 1 
HETATM 46 H H192 RSI . . . N 6 8.51 64.073 -25.476 0 146.6 ? H192 RSI 1101 B 1 
HETATM 47 H H193 RSI . . . N 6 9.815 63.878 -26.661 0 146.6 ? H193 RSI 1101 B 1 
HETATM 48 H H191 RSI . . . N 6 10.196 64.318 -24.986 0 146.6 ? H191 RSI 1101 B 1 
HETATM 49 H H201 RSI . . . N 6 7.268 66.134 -25.754 0 143.85 ? H201 RSI 1101 B 1 
HETATM 50 H H203 RSI . . . N 6 7.894 67.264 -26.97 0 143.85 ? H203 RSI 1101 B 1 
HETATM 51 H H202 RSI . . . N 6 7.644 65.559 -27.389 0 143.85 ? H202 RSI 1101 B 1 
HETATM 52 H H212 RSI . . . N 6 10.321 64.04 -32.747 0 145.04 ? H212 RSI 1101 B 1 
HETATM 53 H H211 RSI . . . N 6 9.089 65.302 -32.846 0 145.04 ? H211 RSI 1101 B 1 
HETATM 54 H H221 RSI . . . N 6 8.588 63.517 -34.456 0 147.04 ? H221 RSI 1101 B 1 
HETATM 55 H H222 RSI . . . N 6 8.619 62.31 -33.157 0 147.04 ? H222 RSI 1101 B 1 
HETATM 56 H H232 RSI . . . N 6 6.888 62.409 -31.491 0 148.53 ? H232 RSI 1101 B 1 
HETATM 57 H H231 RSI . . . N 6 5.678 63.699 -31.626 0 148.53 ? H231 RSI 1101 B 1 
HETATM 58 H H241 RSI . . . N 6 7.368 64.158 -29.858 0 142.56 ? H241 RSI 1101 B 1 
HETATM 59 H H242 RSI . . . N 6 7.361 65.387 -31.127 0 142.56 ? H242 RSI 1101 B 1 
#
_model_server_stats.io_time_ms              104 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           59 
#