data_8BU3 # _model_server_result.job_id nXoTwQioBNIr3jWEoW6nwA _model_server_result.datetime_utc '2024-11-26 12:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1201}' # _entry.id 8BU3 # _exptl.entry_id 8BU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BU3 _cell.length_a 249.61 _cell.length_b 249.61 _cell.length_c 217.866 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q 1 1 D,E,F,R,S,T,U,V,W,X 2 1 G,H,I,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8BU3 _atom_sites.fract_transf_matrix[1][1] 0.004006 _atom_sites.fract_transf_matrix[1][2] 0.002313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 EDO A 1 1201 1201 EDO EDO . K 5 SO4 A 1 1202 3 SO4 SO4 . L 5 SO4 A 1 1203 5 SO4 SO4 . M 5 SO4 A 1 1204 27 SO4 SO4 . N 6 RSI B 1 1101 1101 RSI D19 . O 5 SO4 C 1 301 4 SO4 SO4 . P 5 SO4 C 1 302 16 SO4 SO4 . Q 5 SO4 C 1 303 30 SO4 SO4 . R 4 EDO D 1 1201 1201 EDO EDO . S 5 SO4 D 1 1202 2 SO4 SO4 . T 5 SO4 D 1 1203 7 SO4 SO4 . U 5 SO4 D 1 1204 29 SO4 SO4 . V 6 RSI E 1 1101 1101 RSI D19 . W 5 SO4 F 1 301 17 SO4 SO4 . X 5 SO4 F 1 302 31 SO4 SO4 . Y 5 SO4 G 1 1201 1 SO4 SO4 . Z 5 SO4 G 1 1202 8 SO4 SO4 . AA 5 SO4 G 1 1203 13 SO4 SO4 . BA 5 SO4 G 1 1204 14 SO4 SO4 . CA 6 RSI H 1 1101 1101 RSI D19 . DA 5 SO4 H 1 1102 33 SO4 SO4 . EA 5 SO4 H 1 1103 34 SO4 SO4 . FA 5 SO4 I 1 301 12 SO4 SO4 . GA 5 SO4 I 1 302 18 SO4 SO4 . HA 5 SO4 I 1 303 32 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 4 4.7 121.433 -11.589 1 108.44 ? C1 EDO 1201 D 1 HETATM 2 O O1 EDO . . . R 4 5.998 121.071 -11.091 1 104.43 ? O1 EDO 1201 D 1 HETATM 3 C C2 EDO . . . R 4 4.159 122.611 -10.76 1 111.9 ? C2 EDO 1201 D 1 HETATM 4 O O2 EDO . . . R 4 2.988 123.137 -11.413 1 113.26 ? O2 EDO 1201 D 1 HETATM 5 H H11 EDO . . . R 4 4.769 121.718 -12.641 0 130.12 ? H11 EDO 1201 D 1 HETATM 6 H H12 EDO . . . R 4 4.02 120.582 -11.516 0 130.12 ? H12 EDO 1201 D 1 HETATM 7 H HO1 EDO . . . R 4 6.252 120.209 -11.449 0 125.32 ? HO1 EDO 1201 D 1 HETATM 8 H H21 EDO . . . R 4 3.906 122.275 -9.752 0 134.27 ? H21 EDO 1201 D 1 HETATM 9 H H22 EDO . . . R 4 4.92 123.389 -10.673 0 134.27 ? H22 EDO 1201 D 1 HETATM 10 H HO2 EDO . . . R 4 2.535 123.751 -10.818 0 135.91 ? HO2 EDO 1201 D 1 # _model_server_stats.io_time_ms 129 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #