data_8BU4
#
_model_server_result.job_id            xDhE-ym8ECB81ktW2OM9hQ 
_model_server_result.datetime_utc      '2024-11-26 12:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    8BU4 
#
_exptl.entry_id    8BU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.372 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU4 
_cell.length_a            250.401 
_cell.length_b            250.401 
_cell.length_c            215.706 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T,U,V 2 1 
G,H,I,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 T N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H22 Cl2 N10 O' 
_chem_comp.formula_weight    501.372 
_chem_comp.id                RQL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 N8 RQL sing 275 n n 
N8 N9 RQL sing 276 n y 
N8 C19 RQL sing 277 n y 
N9 C21 RQL doub 278 n y 
C19 C18 RQL doub 279 n y 
C21 C18 RQL sing 280 n y 
C18 N7 RQL sing 281 n n 
C17 N7 RQL sing 282 n y 
C17 N6 RQL doub 283 n y 
N7 C15 RQL sing 284 n y 
N6 C16 RQL sing 285 n y 
C15 C16 RQL doub 286 n y 
C15 N5 RQL sing 287 n y 
C16 C9 RQL sing 288 n y 
N5 C10 RQL doub 289 n y 
C9 N2 RQL sing 290 n n 
C9 N3 RQL doub 291 n y 
C10 N3 RQL sing 292 n y 
C10 N4 RQL sing 293 n n 
N2 C8 RQL sing 294 n n 
C13 C12 RQL sing 295 n n 
N4 C11 RQL sing 296 n n 
C12 C11 RQL sing 297 n n 
C8 C7 RQL sing 298 n n 
C11 C14 RQL sing 299 n n 
C14 O1 RQL sing 300 n n 
C7 N10 RQL doub 301 n y 
C7 N1 RQL sing 302 n y 
N10 C5 RQL sing 303 n y 
N1 C6 RQL sing 304 n y 
C5 C6 RQL doub 305 n y 
C5 C4 RQL sing 306 n y 
C6 C3 RQL sing 307 n y 
C4 C1 RQL doub 308 n y 
C3 C2 RQL doub 309 n y 
C1 C2 RQL sing 310 n y 
C1 CL1 RQL sing 311 n n 
C2 CL2 RQL sing 312 n n 
C3 H1 RQL sing 313 n n 
C4 H2 RQL sing 314 n n 
C8 H5 RQL sing 315 n n 
C8 H4 RQL sing 316 n n 
C17 H17 RQL sing 317 n n 
C14 H14 RQL sing 318 n n 
C14 H15 RQL sing 319 n n 
C13 H11 RQL sing 320 n n 
C13 H12 RQL sing 321 n n 
C13 H13 RQL sing 322 n n 
C12 H10 RQL sing 323 n n 
C12 H9 RQL sing 324 n n 
C11 H8 RQL sing 325 n n 
C19 H18 RQL sing 326 n n 
C20 H20 RQL sing 327 n n 
C20 H21 RQL sing 328 n n 
C20 H19 RQL sing 329 n n 
C21 H22 RQL sing 330 n n 
N1 H3 RQL sing 331 n n 
N2 H6 RQL sing 332 n n 
N4 H7 RQL sing 333 n n 
O1 H16 RQL sing 334 n n 
#
_atom_sites.entry_id                     8BU4 
_atom_sites.fract_transf_matrix[1][1]    0.003994 
_atom_sites.fract_transf_matrix[1][2]    0.002306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 1 SO4 SO4 . 
K 4 SO4 A 1 1202 7 SO4 SO4 . 
L 4 SO4 A 1 1203 12 SO4 SO4 . 
M 5 RQL B 1 1101 1101 RQL D22 . 
N 4 SO4 B 1 1102 13 SO4 SO4 . 
O 4 SO4 C 1 301 6 SO4 SO4 . 
P 4 SO4 D 1 1201 2 SO4 SO4 . 
Q 4 SO4 D 1 1202 5 SO4 SO4 . 
R 4 SO4 D 1 1203 8 SO4 SO4 . 
S 4 SO4 D 1 1204 9 SO4 SO4 . 
T 5 RQL E 1 1101 1101 RQL D22 . 
U 4 SO4 F 1 301 10 SO4 SO4 . 
V 4 SO4 F 1 302 14 SO4 SO4 . 
W 4 SO4 G 1 1201 3 SO4 SO4 . 
X 4 SO4 G 1 1202 11 SO4 SO4 . 
Y 5 RQL H 1 1101 1101 RQL D22 . 
Z 4 SO4 I 1 301 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RQL . . . M 5 -64.825 26.261 1.301 1 120.11 ? C2 RQL 1101 B 1 
HETATM 2 C C3 RQL . . . M 5 -63.958 25.619 0.432 1 115.05 ? C3 RQL 1101 B 1 
HETATM 3 C C4 RQL . . . M 5 -66.764 25.174 0.313 1 113.15 ? C4 RQL 1101 B 1 
HETATM 4 C C5 RQL . . . M 5 -65.905 24.52 -0.57 1 109.87 ? C5 RQL 1101 B 1 
HETATM 5 C C6 RQL . . . M 5 -64.525 24.755 -0.495 1 110.52 ? C6 RQL 1101 B 1 
HETATM 6 C C7 RQL . . . M 5 -64.995 23.324 -2.1 1 102.43 ? C7 RQL 1101 B 1 
HETATM 7 C C8 RQL . . . M 5 -64.779 22.376 -3.234 1 99.18 ? C8 RQL 1101 B 1 
HETATM 8 C C10 RQL . . . M 5 -61.362 24.027 -4.935 1 96.98 ? C10 RQL 1101 B 1 
HETATM 9 C C17 RQL . . . M 5 -63.854 24.277 -8.552 1 96.04 ? C17 RQL 1101 B 1 
HETATM 10 C C16 RQL . . . M 5 -63.557 23.846 -6.455 1 95.77 ? C16 RQL 1101 B 1 
HETATM 11 C C15 RQL . . . M 5 -62.349 24.269 -6.939 1 96.1 ? C15 RQL 1101 B 1 
HETATM 12 C C14 RQL . . . M 5 -58.736 24.443 -2.315 1 101.42 ? C14 RQL 1101 B 1 
HETATM 13 C C13 RQL . . . M 5 -59.178 26.844 -4.236 1 97.19 ? C13 RQL 1101 B 1 
HETATM 14 C C12 RQL . . . M 5 -60.177 26.352 -3.244 1 97.84 ? C12 RQL 1101 B 1 
HETATM 15 C C11 RQL . . . M 5 -60.072 24.853 -2.95 1 98.14 ? C11 RQL 1101 B 1 
HETATM 16 N N9 RQL . . . M 5 -60.426 26.449 -10.468 1 107.76 ? N9 RQL 1101 B 1 
HETATM 17 C C1 RQL . . . M 5 -66.221 26.036 1.239 1 120.07 ? C1 RQL 1101 B 1 
HETATM 18 C C18 RQL . . . M 5 -61.567 24.994 -9.169 1 100.28 ? C18 RQL 1101 B 1 
HETATM 19 C C19 RQL . . . M 5 -60.576 24.3 -9.791 1 103.47 ? C19 RQL 1101 B 1 
HETATM 20 C C20 RQL . . . M 5 -58.729 24.947 -11.399 1 111.37 ? C20 RQL 1101 B 1 
HETATM 21 C C21 RQL . . . M 5 -61.448 26.308 -9.626 1 101.76 ? C21 RQL 1101 B 1 
HETATM 22 C C9 RQL . . . M 5 -63.627 23.503 -5.087 1 94.99 ? C9 RQL 1101 B 1 
HETATM 23 N N1 RQL . . . M 5 -63.979 23.966 -1.481 1 104.87 ? N1 RQL 1101 B 1 
HETATM 24 N N10 RQL . . . M 5 -66.178 23.612 -1.587 1 103.53 ? N10 RQL 1101 B 1 
HETATM 25 N N2 RQL . . . M 5 -64.763 23.06 -4.51 1 96.37 ? N2 RQL 1101 B 1 
HETATM 26 N N3 RQL . . . M 5 -62.504 23.598 -4.344 1 97.29 ? N3 RQL 1101 B 1 
HETATM 27 N N4 RQL . . . M 5 -60.242 24.111 -4.203 1 97.88 ? N4 RQL 1101 B 1 
HETATM 28 N N5 RQL . . . M 5 -61.22 24.368 -6.231 1 95.44 ? N5 RQL 1101 B 1 
HETATM 29 N N6 RQL . . . M 5 -64.494 23.875 -7.484 1 96.49 ? N6 RQL 1101 B 1 
HETATM 30 N N7 RQL . . . M 5 -62.536 24.506 -8.279 1 97.44 ? N7 RQL 1101 B 1 
HETATM 31 N N8 RQL . . . M 5 -59.892 25.19 -10.55 1 111.84 ? N8 RQL 1101 B 1 
HETATM 32 O O1 RQL . . . M 5 -58.65 23.043 -2.032 1 111.77 ? O1 RQL 1101 B 1 
HETATM 33 CL CL1 RQL . . . M 5 -67.284 26.859 2.342 1 189.26 ? CL1 RQL 1101 B 1 
HETATM 34 CL CL2 RQL . . . M 5 -64.178 27.358 2.48 1 185.35 ? CL2 RQL 1101 B 1 
HETATM 35 H H1 RQL . . . M 5 -63.037 25.761 0.469 0 138.06 ? H1 RQL 1101 B 1 
HETATM 36 H H2 RQL . . . M 5 -67.684 25.029 0.275 0 135.77 ? H2 RQL 1101 B 1 
HETATM 37 H H5 RQL . . . M 5 -63.932 21.913 -3.109 0 119.01 ? H5 RQL 1101 B 1 
HETATM 38 H H4 RQL . . . M 5 -65.488 21.71 -3.236 0 119.01 ? H4 RQL 1101 B 1 
HETATM 39 H H17 RQL . . . M 5 -64.255 24.39 -9.394 0 115.24 ? H17 RQL 1101 B 1 
HETATM 40 H H14 RQL . . . M 5 -58.618 24.947 -1.481 0 121.71 ? H14 RQL 1101 B 1 
HETATM 41 H H15 RQL . . . M 5 -58.01 24.692 -2.926 0 121.71 ? H15 RQL 1101 B 1 
HETATM 42 H H11 RQL . . . M 5 -59.325 27.791 -4.403 0 116.62 ? H11 RQL 1101 B 1 
HETATM 43 H H12 RQL . . . M 5 -59.276 26.349 -5.068 0 116.62 ? H12 RQL 1101 B 1 
HETATM 44 H H13 RQL . . . M 5 -58.28 26.712 -3.886 0 116.62 ? H13 RQL 1101 B 1 
HETATM 45 H H10 RQL . . . M 5 -61.078 26.544 -3.579 0 117.4 ? H10 RQL 1101 B 1 
HETATM 46 H H9 RQL . . . M 5 -60.059 26.846 -2.404 0 117.4 ? H9 RQL 1101 B 1 
HETATM 47 H H8 RQL . . . M 5 -60.803 24.613 -2.312 0 117.77 ? H8 RQL 1101 B 1 
HETATM 48 H H18 RQL . . . M 5 -60.404 23.374 -9.706 0 124.17 ? H18 RQL 1101 B 1 
HETATM 49 H H20 RQL . . . M 5 -58.216 25.764 -11.486 0 133.65 ? H20 RQL 1101 B 1 
HETATM 50 H H21 RQL . . . M 5 -59.024 24.656 -12.275 0 133.65 ? H21 RQL 1101 B 1 
HETATM 51 H H19 RQL . . . M 5 -58.175 24.259 -11 0 133.65 ? H19 RQL 1101 B 1 
HETATM 52 H H22 RQL . . . M 5 -62.01 27.027 -9.383 0 122.11 ? H22 RQL 1101 B 1 
HETATM 53 H H3 RQL . . . M 5 -63.123 23.892 -1.675 0 125.84 ? H3 RQL 1101 B 1 
HETATM 54 H H6 RQL . . . M 5 -65.518 23.19 -4.922 0 115.64 ? H6 RQL 1101 B 1 
HETATM 55 H H7 RQL . . . M 5 -59.536 23.678 -4.502 0 117.46 ? H7 RQL 1101 B 1 
HETATM 56 H H16 RQL . . . M 5 -58.692 22.617 -2.762 0 134.12 ? H16 RQL 1101 B 1 
#
_model_server_stats.io_time_ms              128 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    212 
_model_server_stats.query_time_ms           418 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           56 
#