data_8BU4
#
_model_server_result.job_id            VSZnXD4qf-LwHZv3fGQrpg 
_model_server_result.datetime_utc      '2024-11-26 12:36:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1101}' 
#
_entry.id    8BU4 
#
_exptl.entry_id    8BU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.372 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU4 
_cell.length_a            250.401 
_cell.length_b            250.401 
_cell.length_c            215.706 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T,U,V 2 1 
G,H,I,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 T N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H22 Cl2 N10 O' 
_chem_comp.formula_weight    501.372 
_chem_comp.id                RQL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 N8 RQL sing 275 n n 
N8 N9 RQL sing 276 n y 
N8 C19 RQL sing 277 n y 
N9 C21 RQL doub 278 n y 
C19 C18 RQL doub 279 n y 
C21 C18 RQL sing 280 n y 
C18 N7 RQL sing 281 n n 
C17 N7 RQL sing 282 n y 
C17 N6 RQL doub 283 n y 
N7 C15 RQL sing 284 n y 
N6 C16 RQL sing 285 n y 
C15 C16 RQL doub 286 n y 
C15 N5 RQL sing 287 n y 
C16 C9 RQL sing 288 n y 
N5 C10 RQL doub 289 n y 
C9 N2 RQL sing 290 n n 
C9 N3 RQL doub 291 n y 
C10 N3 RQL sing 292 n y 
C10 N4 RQL sing 293 n n 
N2 C8 RQL sing 294 n n 
C13 C12 RQL sing 295 n n 
N4 C11 RQL sing 296 n n 
C12 C11 RQL sing 297 n n 
C8 C7 RQL sing 298 n n 
C11 C14 RQL sing 299 n n 
C14 O1 RQL sing 300 n n 
C7 N10 RQL doub 301 n y 
C7 N1 RQL sing 302 n y 
N10 C5 RQL sing 303 n y 
N1 C6 RQL sing 304 n y 
C5 C6 RQL doub 305 n y 
C5 C4 RQL sing 306 n y 
C6 C3 RQL sing 307 n y 
C4 C1 RQL doub 308 n y 
C3 C2 RQL doub 309 n y 
C1 C2 RQL sing 310 n y 
C1 CL1 RQL sing 311 n n 
C2 CL2 RQL sing 312 n n 
C3 H1 RQL sing 313 n n 
C4 H2 RQL sing 314 n n 
C8 H5 RQL sing 315 n n 
C8 H4 RQL sing 316 n n 
C17 H17 RQL sing 317 n n 
C14 H14 RQL sing 318 n n 
C14 H15 RQL sing 319 n n 
C13 H11 RQL sing 320 n n 
C13 H12 RQL sing 321 n n 
C13 H13 RQL sing 322 n n 
C12 H10 RQL sing 323 n n 
C12 H9 RQL sing 324 n n 
C11 H8 RQL sing 325 n n 
C19 H18 RQL sing 326 n n 
C20 H20 RQL sing 327 n n 
C20 H21 RQL sing 328 n n 
C20 H19 RQL sing 329 n n 
C21 H22 RQL sing 330 n n 
N1 H3 RQL sing 331 n n 
N2 H6 RQL sing 332 n n 
N4 H7 RQL sing 333 n n 
O1 H16 RQL sing 334 n n 
#
_atom_sites.entry_id                     8BU4 
_atom_sites.fract_transf_matrix[1][1]    0.003994 
_atom_sites.fract_transf_matrix[1][2]    0.002306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 1 SO4 SO4 . 
K 4 SO4 A 1 1202 7 SO4 SO4 . 
L 4 SO4 A 1 1203 12 SO4 SO4 . 
M 5 RQL B 1 1101 1101 RQL D22 . 
N 4 SO4 B 1 1102 13 SO4 SO4 . 
O 4 SO4 C 1 301 6 SO4 SO4 . 
P 4 SO4 D 1 1201 2 SO4 SO4 . 
Q 4 SO4 D 1 1202 5 SO4 SO4 . 
R 4 SO4 D 1 1203 8 SO4 SO4 . 
S 4 SO4 D 1 1204 9 SO4 SO4 . 
T 5 RQL E 1 1101 1101 RQL D22 . 
U 4 SO4 F 1 301 10 SO4 SO4 . 
V 4 SO4 F 1 302 14 SO4 SO4 . 
W 4 SO4 G 1 1201 3 SO4 SO4 . 
X 4 SO4 G 1 1202 11 SO4 SO4 . 
Y 5 RQL H 1 1101 1101 RQL D22 . 
Z 4 SO4 I 1 301 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RQL . . . T 5 -109.107 60.863 -43.652 1 103.96 ? C2 RQL 1101 E 1 
HETATM 2 C C3 RQL . . . T 5 -109.72 60.285 -44.751 1 101.63 ? C3 RQL 1101 E 1 
HETATM 3 C C4 RQL . . . T 5 -108.426 58.697 -42.782 1 99.48 ? C4 RQL 1101 E 1 
HETATM 4 C C5 RQL . . . T 5 -109.039 58.103 -43.881 1 97.91 ? C5 RQL 1101 E 1 
HETATM 5 C C6 RQL . . . T 5 -109.674 58.9 -44.841 1 98.89 ? C6 RQL 1101 E 1 
HETATM 6 C C7 RQL . . . T 5 -109.826 56.764 -45.357 1 105.65 ? C7 RQL 1101 E 1 
HETATM 7 C C8 RQL . . . T 5 -110.207 55.536 -46.119 1 96.3 ? C8 RQL 1101 E 1 
HETATM 8 C C10 RQL . . . T 5 -113.876 57.031 -47.257 1 90.18 ? C10 RQL 1101 E 1 
HETATM 9 C C17 RQL . . . T 5 -115.385 53.166 -45.823 1 88.94 ? C17 RQL 1101 E 1 
HETATM 10 C C16 RQL . . . T 5 -113.829 54.62 -46.124 1 87.66 ? C16 RQL 1101 E 1 
HETATM 11 C C15 RQL . . . T 5 -114.966 55.159 -46.675 1 89.71 ? C15 RQL 1101 E 1 
HETATM 12 C C14 RQL . . . T 5 -115.094 59.67 -49.289 1 93.1 ? C14 RQL 1101 E 1 
HETATM 13 C C13 RQL . . . T 5 -116.962 60.162 -46.859 1 92.42 ? C13 RQL 1101 E 1 
HETATM 14 C C12 RQL . . . T 5 -116.128 58.918 -47.112 1 91.07 ? C12 RQL 1101 E 1 
HETATM 15 C C11 RQL . . . T 5 -114.829 59.291 -47.816 1 90.62 ? C11 RQL 1101 E 1 
HETATM 16 N N9 RQL . . . T 5 -119.507 54.805 -46.882 1 93.25 ? N9 RQL 1101 E 1 
HETATM 17 C C1 RQL . . . T 5 -108.464 60.07 -42.675 1 103.04 ? C1 RQL 1101 E 1 
HETATM 18 C C18 RQL . . . T 5 -117.326 54.224 -46.838 1 90.28 ? C18 RQL 1101 E 1 
HETATM 19 C C19 RQL . . . T 5 -117.939 53.45 -47.778 1 92.75 ? C19 RQL 1101 E 1 
HETATM 20 C C20 RQL . . . T 5 -120.328 53.251 -48.589 1 97.83 ? C20 RQL 1101 E 1 
HETATM 21 C C21 RQL . . . T 5 -118.324 55.054 -46.324 1 90.84 ? C21 RQL 1101 E 1 
HETATM 22 C C9 RQL . . . T 5 -112.65 55.387 -46.177 1 90.12 ? C9 RQL 1101 E 1 
HETATM 23 N N1 RQL . . . T 5 -110.174 58.007 -45.761 1 95.28 ? N1 RQL 1101 E 1 
HETATM 24 N N10 RQL . . . T 5 -109.152 56.76 -44.225 1 94.17 ? N10 RQL 1101 E 1 
HETATM 25 N N2 RQL . . . T 5 -111.467 54.969 -45.69 1 89.35 ? N2 RQL 1101 E 1 
HETATM 26 N N3 RQL . . . T 5 -112.699 56.582 -46.783 1 90.32 ? N3 RQL 1101 E 1 
HETATM 27 N N4 RQL . . . T 5 -113.832 58.226 -47.847 1 90.82 ? N4 RQL 1101 E 1 
HETATM 28 N N5 RQL . . . T 5 -115.042 56.358 -47.263 1 90.4 ? N5 RQL 1101 E 1 
HETATM 29 N N6 RQL . . . T 5 -114.113 53.366 -45.602 1 89.31 ? N6 RQL 1101 E 1 
HETATM 30 N N7 RQL . . . T 5 -115.964 54.229 -46.467 1 89.3 ? N7 RQL 1101 E 1 
HETATM 31 N N8 RQL . . . T 5 -119.249 53.799 -47.777 1 102.93 ? N8 RQL 1101 E 1 
HETATM 32 O O1 RQL . . . T 5 -113.94 60.075 -50.035 1 110.9 ? O1 RQL 1101 E 1 
HETATM 33 CL CL1 RQL . . . T 5 -107.703 60.829 -41.311 1 128.3 ? CL1 RQL 1101 E 1 
HETATM 34 CL CL2 RQL . . . T 5 -109.14 62.591 -43.497 1 151.77 ? CL2 RQL 1101 E 1 
HETATM 35 H H1 RQL . . . T 5 -110.145 60.802 -45.4 0 121.96 ? H1 RQL 1101 E 1 
HETATM 36 H H2 RQL . . . T 5 -108.001 58.177 -42.135 0 119.37 ? H2 RQL 1101 E 1 
HETATM 37 H H5 RQL . . . T 5 -110.268 55.757 -47.065 0 115.56 ? H5 RQL 1101 E 1 
HETATM 38 H H4 RQL . . . T 5 -109.508 54.868 -46.011 0 115.56 ? H4 RQL 1101 E 1 
HETATM 39 H H17 RQL . . . T 5 -115.843 52.387 -45.569 0 106.73 ? H17 RQL 1101 E 1 
HETATM 40 H H14 RQL . . . T 5 -115.746 60.402 -49.302 0 111.72 ? H14 RQL 1101 E 1 
HETATM 41 H H15 RQL . . . T 5 -115.497 58.895 -49.734 0 111.72 ? H15 RQL 1101 E 1 
HETATM 42 H H11 RQL . . . T 5 -116.751 60.837 -47.528 0 110.9 ? H11 RQL 1101 E 1 
HETATM 43 H H12 RQL . . . T 5 -116.764 60.512 -45.973 0 110.9 ? H12 RQL 1101 E 1 
HETATM 44 H H13 RQL . . . T 5 -117.907 59.937 -46.914 0 110.9 ? H13 RQL 1101 E 1 
HETATM 45 H H10 RQL . . . T 5 -116.634 58.286 -47.666 0 109.28 ? H10 RQL 1101 E 1 
HETATM 46 H H9 RQL . . . T 5 -115.927 58.474 -46.261 0 109.28 ? H9 RQL 1101 E 1 
HETATM 47 H H8 RQL . . . T 5 -114.441 60.037 -47.275 0 108.74 ? H8 RQL 1101 E 1 
HETATM 48 H H18 RQL . . . T 5 -117.524 52.797 -48.321 0 111.3 ? H18 RQL 1101 E 1 
HETATM 49 H H20 RQL . . . T 5 -120.965 53.951 -48.794 0 117.39 ? H20 RQL 1101 E 1 
HETATM 50 H H21 RQL . . . T 5 -120.772 52.543 -48.099 0 117.39 ? H21 RQL 1101 E 1 
HETATM 51 H H19 RQL . . . T 5 -119.963 52.894 -49.412 0 117.39 ? H19 RQL 1101 E 1 
HETATM 52 H H22 RQL . . . T 5 -118.202 55.716 -45.663 0 109.01 ? H22 RQL 1101 E 1 
HETATM 53 H H3 RQL . . . T 5 -110.636 58.207 -46.483 0 114.34 ? H3 RQL 1101 E 1 
HETATM 54 H H6 RQL . . . T 5 -111.459 54.334 -45.096 0 107.22 ? H6 RQL 1101 E 1 
HETATM 55 H H7 RQL . . . T 5 -113.108 58.398 -48.317 0 108.98 ? H7 RQL 1101 E 1 
HETATM 56 H H16 RQL . . . T 5 -114.177 60.237 -50.83 0 133.08 ? H16 RQL 1101 E 1 
#
_model_server_stats.io_time_ms              137 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    102 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           56 
#