data_8BU4
#
_model_server_result.job_id            hubPuDCWkq9Bu-pdxg7EhA 
_model_server_result.datetime_utc      '2024-11-07 00:37:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":1101}' 
#
_entry.id    8BU4 
#
_exptl.entry_id    8BU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.372 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU4 
_cell.length_a            250.401 
_cell.length_b            250.401 
_cell.length_c            215.706 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T,U,V 2 1 
G,H,I,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 T N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H22 Cl2 N10 O' 
_chem_comp.formula_weight    501.372 
_chem_comp.id                RQL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methylamino]-9-(1-methylpyrazol-4-yl)purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 N8 RQL sing 275 n n 
N8 N9 RQL sing 276 n y 
N8 C19 RQL sing 277 n y 
N9 C21 RQL doub 278 n y 
C19 C18 RQL doub 279 n y 
C21 C18 RQL sing 280 n y 
C18 N7 RQL sing 281 n n 
C17 N7 RQL sing 282 n y 
C17 N6 RQL doub 283 n y 
N7 C15 RQL sing 284 n y 
N6 C16 RQL sing 285 n y 
C15 C16 RQL doub 286 n y 
C15 N5 RQL sing 287 n y 
C16 C9 RQL sing 288 n y 
N5 C10 RQL doub 289 n y 
C9 N2 RQL sing 290 n n 
C9 N3 RQL doub 291 n y 
C10 N3 RQL sing 292 n y 
C10 N4 RQL sing 293 n n 
N2 C8 RQL sing 294 n n 
C13 C12 RQL sing 295 n n 
N4 C11 RQL sing 296 n n 
C12 C11 RQL sing 297 n n 
C8 C7 RQL sing 298 n n 
C11 C14 RQL sing 299 n n 
C14 O1 RQL sing 300 n n 
C7 N10 RQL doub 301 n y 
C7 N1 RQL sing 302 n y 
N10 C5 RQL sing 303 n y 
N1 C6 RQL sing 304 n y 
C5 C6 RQL doub 305 n y 
C5 C4 RQL sing 306 n y 
C6 C3 RQL sing 307 n y 
C4 C1 RQL doub 308 n y 
C3 C2 RQL doub 309 n y 
C1 C2 RQL sing 310 n y 
C1 CL1 RQL sing 311 n n 
C2 CL2 RQL sing 312 n n 
C3 H1 RQL sing 313 n n 
C4 H2 RQL sing 314 n n 
C8 H5 RQL sing 315 n n 
C8 H4 RQL sing 316 n n 
C17 H17 RQL sing 317 n n 
C14 H14 RQL sing 318 n n 
C14 H15 RQL sing 319 n n 
C13 H11 RQL sing 320 n n 
C13 H12 RQL sing 321 n n 
C13 H13 RQL sing 322 n n 
C12 H10 RQL sing 323 n n 
C12 H9 RQL sing 324 n n 
C11 H8 RQL sing 325 n n 
C19 H18 RQL sing 326 n n 
C20 H20 RQL sing 327 n n 
C20 H21 RQL sing 328 n n 
C20 H19 RQL sing 329 n n 
C21 H22 RQL sing 330 n n 
N1 H3 RQL sing 331 n n 
N2 H6 RQL sing 332 n n 
N4 H7 RQL sing 333 n n 
O1 H16 RQL sing 334 n n 
#
_atom_sites.entry_id                     8BU4 
_atom_sites.fract_transf_matrix[1][1]    0.003994 
_atom_sites.fract_transf_matrix[1][2]    0.002306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 1 SO4 SO4 . 
K 4 SO4 A 1 1202 7 SO4 SO4 . 
L 4 SO4 A 1 1203 12 SO4 SO4 . 
M 5 RQL B 1 1101 1101 RQL D22 . 
N 4 SO4 B 1 1102 13 SO4 SO4 . 
O 4 SO4 C 1 301 6 SO4 SO4 . 
P 4 SO4 D 1 1201 2 SO4 SO4 . 
Q 4 SO4 D 1 1202 5 SO4 SO4 . 
R 4 SO4 D 1 1203 8 SO4 SO4 . 
S 4 SO4 D 1 1204 9 SO4 SO4 . 
T 5 RQL E 1 1101 1101 RQL D22 . 
U 4 SO4 F 1 301 10 SO4 SO4 . 
V 4 SO4 F 1 302 14 SO4 SO4 . 
W 4 SO4 G 1 1201 3 SO4 SO4 . 
X 4 SO4 G 1 1202 11 SO4 SO4 . 
Y 5 RQL H 1 1101 1101 RQL D22 . 
Z 4 SO4 I 1 301 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RQL . . . Y 5 -134.544 18.99 11.342 1 97.51 ? C2 RQL 1101 H 1 
HETATM 2 C C3 RQL . . . Y 5 -134.799 17.63 11.291 1 93.85 ? C3 RQL 1101 H 1 
HETATM 3 C C4 RQL . . . Y 5 -133.162 18.888 9.35 1 92.19 ? C4 RQL 1101 H 1 
HETATM 4 C C5 RQL . . . Y 5 -133.41 17.519 9.28 1 90.2 ? C5 RQL 1101 H 1 
HETATM 5 C C6 RQL . . . Y 5 -134.223 16.92 10.25 1 91.05 ? C6 RQL 1101 H 1 
HETATM 6 C C7 RQL . . . Y 5 -133.521 15.442 8.783 1 93.44 ? C7 RQL 1101 H 1 
HETATM 7 C C8 RQL . . . Y 5 -133.327 14.111 8.13 1 84.73 ? C8 RQL 1101 H 1 
HETATM 8 C C10 RQL . . . Y 5 -133.273 11.675 11.497 1 85.9 ? C10 RQL 1101 H 1 
HETATM 9 C C17 RQL . . . Y 5 -129.294 10.575 10.046 1 84.27 ? C17 RQL 1101 H 1 
HETATM 10 C C16 RQL . . . Y 5 -131.1 11.732 9.952 1 83.6 ? C16 RQL 1101 H 1 
HETATM 11 C C15 RQL . . . Y 5 -131.248 10.87 11.005 1 84.85 ? C15 RQL 1101 H 1 
HETATM 12 C C14 RQL . . . Y 5 -135.173 11.564 14.537 1 90.11 ? C14 RQL 1101 H 1 
HETATM 13 C C13 RQL . . . Y 5 -132.421 12.693 14.419 1 87.08 ? C13 RQL 1101 H 1 
HETATM 14 C C12 RQL . . . Y 5 -133.551 13.398 13.777 1 89.69 ? C12 RQL 1101 H 1 
HETATM 15 C C11 RQL . . . Y 5 -134.71 12.479 13.387 1 88.17 ? C11 RQL 1101 H 1 
HETATM 16 N N9 RQL . . . Y 5 -128.583 8.103 13.625 1 89.2 ? N9 RQL 1101 H 1 
HETATM 17 C C1 RQL . . . Y 5 -133.725 19.614 10.375 1 96.93 ? C1 RQL 1101 H 1 
HETATM 18 C C18 RQL . . . Y 5 -129.734 9.13 11.977 1 87.93 ? C18 RQL 1101 H 1 
HETATM 19 C C19 RQL . . . Y 5 -130.323 7.926 12.193 1 89.86 ? C19 RQL 1101 H 1 
HETATM 20 C C20 RQL . . . Y 5 -129.828 6.001 13.767 1 94.03 ? C20 RQL 1101 H 1 
HETATM 21 C C21 RQL . . . Y 5 -128.68 9.206 12.889 1 87.02 ? C21 RQL 1101 H 1 
HETATM 22 C C9 RQL . . . Y 5 -132.158 12.62 9.689 1 84.73 ? C9 RQL 1101 H 1 
HETATM 23 N N1 RQL . . . Y 5 -134.258 15.591 9.904 1 88.95 ? N1 RQL 1101 H 1 
HETATM 24 N N10 RQL . . . Y 5 -132.971 16.566 8.367 1 87.22 ? N10 RQL 1101 H 1 
HETATM 25 N N2 RQL . . . Y 5 -132.139 13.462 8.641 1 85.01 ? N2 RQL 1101 H 1 
HETATM 26 N N3 RQL . . . Y 5 -133.254 12.548 10.466 1 86.56 ? N3 RQL 1101 H 1 
HETATM 27 N N4 RQL . . . Y 5 -134.38 11.624 12.247 1 88.21 ? N4 RQL 1101 H 1 
HETATM 28 N N5 RQL . . . Y 5 -132.308 10.793 11.809 1 89.96 ? N5 RQL 1101 H 1 
HETATM 29 N N6 RQL . . . Y 5 -129.862 11.53 9.357 1 84.18 ? N6 RQL 1101 H 1 
HETATM 30 N N7 RQL . . . Y 5 -130.09 10.148 11.073 1 85.55 ? N7 RQL 1101 H 1 
HETATM 31 N N8 RQL . . . Y 5 -129.613 7.318 13.175 1 110.91 ? N8 RQL 1101 H 1 
HETATM 32 O O1 RQL . . . Y 5 -136.379 10.854 14.295 1 101.69 ? O1 RQL 1101 H 1 
HETATM 33 CL CL1 RQL . . . Y 5 -133.412 21.324 10.457 1 119.79 ? CL1 RQL 1101 H 1 
HETATM 34 CL CL2 RQL . . . Y 5 -135.239 19.932 12.622 1 156.26 ? CL2 RQL 1101 H 1 
HETATM 35 H H1 RQL . . . Y 5 -135.335 17.211 11.929 0 112.62 ? H1 RQL 1101 H 1 
HETATM 36 H H2 RQL . . . Y 5 -132.624 19.304 8.712 0 110.63 ? H2 RQL 1101 H 1 
HETATM 37 H H5 RQL . . . Y 5 -134.103 13.548 8.299 0 101.67 ? H5 RQL 1101 H 1 
HETATM 38 H H4 RQL . . . Y 5 -133.245 14.228 7.168 0 101.67 ? H4 RQL 1101 H 1 
HETATM 39 H H17 RQL . . . Y 5 -128.442 10.229 9.854 0 101.12 ? H17 RQL 1101 H 1 
HETATM 40 H H14 RQL . . . Y 5 -135.29 12.116 15.339 0 108.13 ? H14 RQL 1101 H 1 
HETATM 41 H H15 RQL . . . Y 5 -134.459 10.915 14.716 0 108.13 ? H15 RQL 1101 H 1 
HETATM 42 H H11 RQL . . . Y 5 -131.878 13.331 14.914 0 104.49 ? H11 RQL 1101 H 1 
HETATM 43 H H12 RQL . . . Y 5 -132.763 12.017 15.03 0 104.49 ? H12 RQL 1101 H 1 
HETATM 44 H H13 RQL . . . Y 5 -131.875 12.264 13.737 0 104.49 ? H13 RQL 1101 H 1 
HETATM 45 H H10 RQL . . . Y 5 -133.887 14.084 14.392 0 107.63 ? H10 RQL 1101 H 1 
HETATM 46 H H9 RQL . . . Y 5 -133.225 13.852 12.971 0 107.63 ? H9 RQL 1101 H 1 
HETATM 47 H H8 RQL . . . Y 5 -135.453 13.09 13.113 0 105.81 ? H8 RQL 1101 H 1 
HETATM 48 H H18 RQL . . . Y 5 -131.081 7.585 11.743 0 107.83 ? H18 RQL 1101 H 1 
HETATM 49 H H20 RQL . . . Y 5 -129.527 6.008 14.689 0 112.83 ? H20 RQL 1101 H 1 
HETATM 50 H H21 RQL . . . Y 5 -129.328 5.337 13.269 0 112.83 ? H21 RQL 1101 H 1 
HETATM 51 H H19 RQL . . . Y 5 -130.772 5.784 13.737 0 112.83 ? H19 RQL 1101 H 1 
HETATM 52 H H22 RQL . . . Y 5 -128.093 9.938 12.991 0 104.42 ? H22 RQL 1101 H 1 
HETATM 53 H H3 RQL . . . Y 5 -134.683 14.951 10.336 0 106.74 ? H3 RQL 1101 H 1 
HETATM 54 H H6 RQL . . . Y 5 -131.378 13.624 8.251 0 102.01 ? H6 RQL 1101 H 1 
HETATM 55 H H7 RQL . . . Y 5 -134.976 11.012 12.034 0 105.85 ? H7 RQL 1101 H 1 
HETATM 56 H H16 RQL . . . Y 5 -136.263 10.347 13.629 0 122.02 ? H16 RQL 1101 H 1 
#
_model_server_stats.io_time_ms              122 
_model_server_stats.parse_time_ms           43 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           56 
#