data_8BU5
#
_model_server_result.job_id            7hYU9XUQnqwsfFxRUX7UKA 
_model_server_result.datetime_utc      '2024-11-26 12:30:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1101}' 
#
_entry.id    8BU5 
#
_exptl.entry_id    8BU5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.356 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU5 
_cell.length_a            249.938 
_cell.length_b            249.938 
_cell.length_c            219.302 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L 1 1 
D,E,F,M,N 2 1 
G,H,I,O,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 M N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C21 H20 Cl2 N10 O' 
_chem_comp.formula_weight    499.356 
_chem_comp.id                RMF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C8 RMF doub 295 n y 
N7 N8 RMF sing 296 n y 
C10 N8 RMF sing 297 n n 
C8 C7 RMF sing 298 n y 
N8 C9 RMF sing 299 n y 
C7 C9 RMF doub 300 n y 
C7 N5 RMF sing 301 n n 
C6 N5 RMF sing 302 n y 
C6 N4 RMF doub 303 n y 
N5 C4 RMF sing 304 n y 
N4 C5 RMF sing 305 n y 
C4 C5 RMF doub 306 n y 
C4 N3 RMF sing 307 n y 
C5 C2 RMF sing 308 n y 
N3 C3 RMF doub 309 n y 
C2 N1 RMF sing 310 n n 
C2 N2 RMF doub 311 n y 
C3 N2 RMF sing 312 n y 
C3 N6 RMF sing 313 n n 
N1 C1 RMF sing 314 n n 
C14 N6 RMF sing 315 n n 
C14 C13 RMF sing 316 n n 
N6 C11 RMF sing 317 n n 
C1 C15 RMF sing 318 n n 
C13 O1 RMF sing 319 n n 
C11 C12 RMF sing 320 n n 
C15 N10 RMF doub 321 n y 
C15 N9 RMF sing 322 n y 
O1 C12 RMF sing 323 n n 
N10 C17 RMF sing 324 n y 
N9 C16 RMF sing 325 n y 
C17 C16 RMF doub 326 n y 
C17 C21 RMF sing 327 n y 
C16 C18 RMF sing 328 n y 
C21 C20 RMF doub 329 n y 
C18 C19 RMF doub 330 n y 
C20 C19 RMF sing 331 n y 
C20 CL2 RMF sing 332 n n 
C19 CL1 RMF sing 333 n n 
C6 H61 RMF sing 334 n n 
C8 H81 RMF sing 335 n n 
C10 H103 RMF sing 336 n n 
C10 H101 RMF sing 337 n n 
C10 H102 RMF sing 338 n n 
C1 H11 RMF sing 339 n n 
C1 H12 RMF sing 340 n n 
C9 H92 RMF sing 341 n n 
C11 H112 RMF sing 342 n n 
C11 H111 RMF sing 343 n n 
C12 H122 RMF sing 344 n n 
C12 H121 RMF sing 345 n n 
C13 H132 RMF sing 346 n n 
C13 H131 RMF sing 347 n n 
C14 H141 RMF sing 348 n n 
C14 H142 RMF sing 349 n n 
C18 H181 RMF sing 350 n n 
C21 H211 RMF sing 351 n n 
N1 H13 RMF sing 352 n n 
N9 H91 RMF sing 353 n n 
#
_atom_sites.entry_id                     8BU5 
_atom_sites.fract_transf_matrix[1][1]    0.004001 
_atom_sites.fract_transf_matrix[1][2]    0.00231 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 2 SO4 SO4 . 
K 5 RMF B 1 1101 1101 RMF SR4 . 
L 6 CIT C 1 301 301 CIT CIT . 
M 5 RMF E 1 1101 1101 RMF SR4 . 
N 6 CIT F 1 301 301 CIT CIT . 
O 4 SO4 G 1 1201 1 SO4 SO4 . 
P 5 RMF H 1 1101 1101 RMF SR4 . 
Q 4 SO4 H 1 1102 3 SO4 SO4 . 
R 6 CIT I 1 301 301 CIT CIT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RMF . . . K 5 -60.535 23.785 -6.949 1 102.57 ? C4 RMF 1101 B 1 
HETATM 2 C C5 RMF . . . K 5 -61.803 23.44 -6.579 1 101.98 ? C5 RMF 1101 B 1 
HETATM 3 C C6 RMF . . . K 5 -61.92 23.919 -8.666 1 102.06 ? C6 RMF 1101 B 1 
HETATM 4 C C7 RMF . . . K 5 -59.621 24.467 -9.204 1 102.8 ? C7 RMF 1101 B 1 
HETATM 5 C C8 RMF . . . K 5 -59.847 24.802 -10.538 1 103.42 ? C8 RMF 1101 B 1 
HETATM 6 C C10 RMF . . . K 5 -56.332 25.03 -10.572 1 110.44 ? C10 RMF 1101 B 1 
HETATM 7 C C1 RMF . . . K 5 -63.377 21.855 -3.618 1 105.87 ? C1 RMF 1101 B 1 
HETATM 8 C C2 RMF . . . K 5 -62.002 23.086 -5.235 1 102.91 ? C2 RMF 1101 B 1 
HETATM 9 C C3 RMF . . . K 5 -59.718 23.473 -4.841 1 103.38 ? C3 RMF 1101 B 1 
HETATM 10 C C9 RMF . . . K 5 -58.258 24.46 -9.044 1 103.68 ? C9 RMF 1101 B 1 
HETATM 11 O O1 RMF . . . K 5 -57.289 24.098 -1.625 1 109.04 ? O1 RMF 1101 B 1 
HETATM 12 C C11 RMF . . . K 5 -59.048 22.838 -2.731 1 105.68 ? C11 RMF 1101 B 1 
HETATM 13 C C12 RMF . . . K 5 -57.84 22.801 -1.842 1 106.44 ? C12 RMF 1101 B 1 
HETATM 14 C C13 RMF . . . K 5 -56.988 24.737 -2.864 1 109.99 ? C13 RMF 1101 B 1 
HETATM 15 C C14 RMF . . . K 5 -58.177 24.801 -3.776 1 105.19 ? C14 RMF 1101 B 1 
HETATM 16 C C15 RMF . . . K 5 -63.386 22.723 -2.406 1 107.54 ? C15 RMF 1101 B 1 
HETATM 17 C C16 RMF . . . K 5 -62.758 23.602 -0.486 1 112.62 ? C16 RMF 1101 B 1 
HETATM 18 C C17 RMF . . . K 5 -63.895 24.25 -0.986 1 111.98 ? C17 RMF 1101 B 1 
HETATM 19 C C18 RMF . . . K 5 -62.171 23.979 0.724 1 114.81 ? C18 RMF 1101 B 1 
HETATM 20 C C19 RMF . . . K 5 -62.759 25.022 1.419 1 119.36 ? C19 RMF 1101 B 1 
HETATM 21 C C20 RMF . . . K 5 -63.904 25.675 0.925 1 117.13 ? C20 RMF 1101 B 1 
HETATM 22 C C21 RMF . . . K 5 -64.472 25.3 -0.273 1 113.38 ? C21 RMF 1101 B 1 
HETATM 23 N N1 RMF . . . K 5 -63.205 22.691 -4.79 1 103.81 ? N1 RMF 1101 B 1 
HETATM 24 N N10 RMF . . . K 5 -64.266 23.677 -2.202 1 108.22 ? N10 RMF 1101 B 1 
HETATM 25 N N2 RMF . . . K 5 -60.939 23.088 -4.394 1 103.82 ? N2 RMF 1101 B 1 
HETATM 26 N N3 RMF . . . K 5 -59.477 23.812 -6.124 1 103.46 ? N3 RMF 1101 B 1 
HETATM 27 N N4 RMF . . . K 5 -62.658 23.52 -7.669 1 101.77 ? N4 RMF 1101 B 1 
HETATM 28 N N5 RMF . . . K 5 -60.621 24.106 -8.287 1 102.41 ? N5 RMF 1101 B 1 
HETATM 29 N N6 RMF . . . K 5 -58.671 23.449 -3.997 1 102.69 ? N6 RMF 1101 B 1 
HETATM 30 N N7 RMF . . . K 5 -58.712 25.063 -11.174 1 103.94 ? N7 RMF 1101 B 1 
HETATM 31 N N8 RMF . . . K 5 -57.739 24.852 -10.233 1 104.3 ? N8 RMF 1101 B 1 
HETATM 32 N N9 RMF . . . K 5 -62.459 22.639 -1.43 1 108.91 ? N9 RMF 1101 B 1 
HETATM 33 CL CL1 RMF . . . K 5 -62.054 25.512 2.926 1 151.45 ? CL1 RMF 1101 B 1 
HETATM 34 CL CL2 RMF . . . K 5 -64.615 26.977 1.818 1 153.58 ? CL2 RMF 1101 B 1 
HETATM 35 H H61 RMF . . . K 5 -62.246 24.059 -9.536 0 122.48 ? H61 RMF 1101 B 1 
HETATM 36 H H81 RMF . . . K 5 -60.691 24.846 -10.96 0 124.11 ? H81 RMF 1101 B 1 
HETATM 37 H H103 RMF . . . K 5 -55.811 24.315 -10.176 0 132.52 ? H103 RMF 1101 B 1 
HETATM 38 H H101 RMF . . . K 5 -56.022 25.882 -10.231 0 132.52 ? H101 RMF 1101 B 1 
HETATM 39 H H102 RMF . . . K 5 -56.227 25.01 -11.535 0 132.52 ? H102 RMF 1101 B 1 
HETATM 40 H H11 RMF . . . K 5 -62.651 21.21 -3.562 0 127.04 ? H11 RMF 1101 B 1 
HETATM 41 H H12 RMF . . . K 5 -64.213 21.362 -3.682 0 127.04 ? H12 RMF 1101 B 1 
HETATM 42 H H92 RMF . . . K 5 -57.783 24.228 -8.26 0 124.42 ? H92 RMF 1101 B 1 
HETATM 43 H H112 RMF . . . K 5 -59.38 21.932 -2.882 0 126.82 ? H112 RMF 1101 B 1 
HETATM 44 H H111 RMF . . . K 5 -59.759 23.358 -2.307 0 126.82 ? H111 RMF 1101 B 1 
HETATM 45 H H122 RMF . . . K 5 -57.158 22.229 -2.251 0 127.73 ? H122 RMF 1101 B 1 
HETATM 46 H H121 RMF . . . K 5 -58.089 22.411 -0.978 0 127.73 ? H121 RMF 1101 B 1 
HETATM 47 H H132 RMF . . . K 5 -56.672 25.647 -2.684 0 131.98 ? H132 RMF 1101 B 1 
HETATM 48 H H131 RMF . . . K 5 -56.268 24.245 -3.31 0 131.98 ? H131 RMF 1101 B 1 
HETATM 49 H H141 RMF . . . K 5 -58.877 25.35 -3.373 0 126.23 ? H141 RMF 1101 B 1 
HETATM 50 H H142 RMF . . . K 5 -57.922 25.207 -4.628 0 126.23 ? H142 RMF 1101 B 1 
HETATM 51 H H181 RMF . . . K 5 -61.413 23.546 1.05 0 137.77 ? H181 RMF 1101 B 1 
HETATM 52 H H211 RMF . . . K 5 -65.226 25.737 -0.601 0 136.06 ? H211 RMF 1101 B 1 
HETATM 53 H H13 RMF . . . K 5 -63.914 22.948 -5.225 0 124.57 ? H13 RMF 1101 B 1 
HETATM 54 H H91 RMF . . . K 5 -61.785 22.073 -1.401 0 130.69 ? H91 RMF 1101 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           54 
#