data_8BU5
#
_model_server_result.job_id            XZLU58AwtSLEewEaWe0Yow 
_model_server_result.datetime_utc      '2024-11-26 12:40:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    8BU5 
#
_exptl.entry_id    8BU5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.356 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU5 
_cell.length_a            249.938 
_cell.length_b            249.938 
_cell.length_c            219.302 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L 1 1 
D,E,F,M,N 2 1 
G,H,I,O,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 M N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C21 H20 Cl2 N10 O' 
_chem_comp.formula_weight    499.356 
_chem_comp.id                RMF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C8 RMF doub 295 n y 
N7 N8 RMF sing 296 n y 
C10 N8 RMF sing 297 n n 
C8 C7 RMF sing 298 n y 
N8 C9 RMF sing 299 n y 
C7 C9 RMF doub 300 n y 
C7 N5 RMF sing 301 n n 
C6 N5 RMF sing 302 n y 
C6 N4 RMF doub 303 n y 
N5 C4 RMF sing 304 n y 
N4 C5 RMF sing 305 n y 
C4 C5 RMF doub 306 n y 
C4 N3 RMF sing 307 n y 
C5 C2 RMF sing 308 n y 
N3 C3 RMF doub 309 n y 
C2 N1 RMF sing 310 n n 
C2 N2 RMF doub 311 n y 
C3 N2 RMF sing 312 n y 
C3 N6 RMF sing 313 n n 
N1 C1 RMF sing 314 n n 
C14 N6 RMF sing 315 n n 
C14 C13 RMF sing 316 n n 
N6 C11 RMF sing 317 n n 
C1 C15 RMF sing 318 n n 
C13 O1 RMF sing 319 n n 
C11 C12 RMF sing 320 n n 
C15 N10 RMF doub 321 n y 
C15 N9 RMF sing 322 n y 
O1 C12 RMF sing 323 n n 
N10 C17 RMF sing 324 n y 
N9 C16 RMF sing 325 n y 
C17 C16 RMF doub 326 n y 
C17 C21 RMF sing 327 n y 
C16 C18 RMF sing 328 n y 
C21 C20 RMF doub 329 n y 
C18 C19 RMF doub 330 n y 
C20 C19 RMF sing 331 n y 
C20 CL2 RMF sing 332 n n 
C19 CL1 RMF sing 333 n n 
C6 H61 RMF sing 334 n n 
C8 H81 RMF sing 335 n n 
C10 H103 RMF sing 336 n n 
C10 H101 RMF sing 337 n n 
C10 H102 RMF sing 338 n n 
C1 H11 RMF sing 339 n n 
C1 H12 RMF sing 340 n n 
C9 H92 RMF sing 341 n n 
C11 H112 RMF sing 342 n n 
C11 H111 RMF sing 343 n n 
C12 H122 RMF sing 344 n n 
C12 H121 RMF sing 345 n n 
C13 H132 RMF sing 346 n n 
C13 H131 RMF sing 347 n n 
C14 H141 RMF sing 348 n n 
C14 H142 RMF sing 349 n n 
C18 H181 RMF sing 350 n n 
C21 H211 RMF sing 351 n n 
N1 H13 RMF sing 352 n n 
N9 H91 RMF sing 353 n n 
#
_atom_sites.entry_id                     8BU5 
_atom_sites.fract_transf_matrix[1][1]    0.004001 
_atom_sites.fract_transf_matrix[1][2]    0.00231 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 2 SO4 SO4 . 
K 5 RMF B 1 1101 1101 RMF SR4 . 
L 6 CIT C 1 301 301 CIT CIT . 
M 5 RMF E 1 1101 1101 RMF SR4 . 
N 6 CIT F 1 301 301 CIT CIT . 
O 4 SO4 G 1 1201 1 SO4 SO4 . 
P 5 RMF H 1 1101 1101 RMF SR4 . 
Q 4 SO4 H 1 1102 3 SO4 SO4 . 
R 6 CIT I 1 301 301 CIT CIT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RMF . . . M 5 -114.719 55.548 -47.895 1 95.72 ? C4 RMF 1101 E 1 
HETATM 2 C C5 RMF . . . M 5 -113.646 55.047 -47.213 1 94.55 ? C5 RMF 1101 E 1 
HETATM 3 C C6 RMF . . . M 5 -115.233 53.636 -46.908 1 96.01 ? C6 RMF 1101 E 1 
HETATM 4 C C7 RMF . . . M 5 -117.047 54.657 -48.187 1 95.52 ? C7 RMF 1101 E 1 
HETATM 5 C C8 RMF . . . M 5 -118.033 53.7 -47.939 1 97.16 ? C8 RMF 1101 E 1 
HETATM 6 C C10 RMF . . . M 5 -119.892 55.759 -50.111 1 102.58 ? C10 RMF 1101 E 1 
HETATM 7 C C1 RMF . . . M 5 -110.026 55.801 -47.059 1 99.47 ? C1 RMF 1101 E 1 
HETATM 8 C C2 RMF . . . M 5 -112.464 55.801 -47.243 1 96.25 ? C2 RMF 1101 E 1 
HETATM 9 C C3 RMF . . . M 5 -113.572 57.392 -48.576 1 95.61 ? C3 RMF 1101 E 1 
HETATM 10 C C9 RMF . . . M 5 -117.607 55.547 -49.071 1 96.55 ? C9 RMF 1101 E 1 
HETATM 11 O O1 RMF . . . M 5 -113.135 61.264 -49.789 1 99.39 ? O1 RMF 1101 E 1 
HETATM 12 C C11 RMF . . . M 5 -114.544 59.459 -48.944 1 96 ? C11 RMF 1101 E 1 
HETATM 13 C C12 RMF . . . M 5 -114.433 60.678 -49.809 1 99.46 ? C12 RMF 1101 E 1 
HETATM 14 C C13 RMF . . . M 5 -112.142 60.31 -50.149 1 99.67 ? C13 RMF 1101 E 1 
HETATM 15 C C14 RMF . . . M 5 -112.178 59.088 -49.283 1 97.69 ? C14 RMF 1101 E 1 
HETATM 16 C C15 RMF . . . M 5 -109.683 57.11 -46.434 1 101.26 ? C15 RMF 1101 E 1 
HETATM 17 C C16 RMF . . . M 5 -109.271 59.263 -46.261 1 106.53 ? C16 RMF 1101 E 1 
HETATM 18 C C17 RMF . . . M 5 -109.262 58.654 -45.003 1 106.03 ? C17 RMF 1101 E 1 
HETATM 19 C C18 RMF . . . M 5 -109.029 60.626 -46.421 1 110.6 ? C18 RMF 1101 E 1 
HETATM 20 C C19 RMF . . . M 5 -108.779 61.364 -45.278 1 112.05 ? C19 RMF 1101 E 1 
HETATM 21 C C20 RMF . . . M 5 -108.768 60.763 -44.006 1 111.84 ? C20 RMF 1101 E 1 
HETATM 22 C C21 RMF . . . M 5 -109.007 59.414 -43.862 1 109.33 ? C21 RMF 1101 E 1 
HETATM 23 N N1 RMF . . . M 5 -111.344 55.381 -46.634 1 97.67 ? N1 RMF 1101 E 1 
HETATM 24 N N10 RMF . . . M 5 -109.543 57.295 -45.14 1 102.72 ? N10 RMF 1101 E 1 
HETATM 25 N N2 RMF . . . M 5 -112.447 56.952 -47.958 1 96.23 ? N2 RMF 1101 E 1 
HETATM 26 N N3 RMF . . . M 5 -114.728 56.697 -48.585 1 95.23 ? N3 RMF 1101 E 1 
HETATM 27 N N4 RMF . . . M 5 -113.982 53.846 -46.604 1 94.66 ? N4 RMF 1101 E 1 
HETATM 28 N N5 RMF . . . M 5 -115.735 54.646 -47.685 1 94.52 ? N5 RMF 1101 E 1 
HETATM 29 N N6 RMF . . . M 5 -113.512 58.506 -49.328 1 94.96 ? N6 RMF 1101 E 1 
HETATM 30 N N7 RMF . . . M 5 -119.164 53.978 -48.578 1 98.39 ? N7 RMF 1101 E 1 
HETATM 31 N N8 RMF . . . M 5 -118.881 55.129 -49.269 1 100.98 ? N8 RMF 1101 E 1 
HETATM 32 N N9 RMF . . . M 5 -109.557 58.246 -47.147 1 102.38 ? N9 RMF 1101 E 1 
HETATM 33 CL CL1 RMF . . . M 5 -108.475 63.061 -45.44 1 152.63 ? CL1 RMF 1101 E 1 
HETATM 34 CL CL2 RMF . . . M 5 -108.451 61.722 -42.595 1 148.23 ? CL2 RMF 1101 E 1 
HETATM 35 H H61 RMF . . . M 5 -115.722 52.885 -46.626 0 115.21 ? H61 RMF 1101 E 1 
HETATM 36 H H81 RMF . . . M 5 -117.934 52.939 -47.389 0 116.59 ? H81 RMF 1101 E 1 
HETATM 37 H H103 RMF . . . M 5 -119.472 56.115 -50.908 0 123.09 ? H103 RMF 1101 E 1 
HETATM 38 H H101 RMF . . . M 5 -120.558 55.101 -50.363 0 123.09 ? H101 RMF 1101 E 1 
HETATM 39 H H102 RMF . . . M 5 -120.317 56.478 -49.621 0 123.09 ? H102 RMF 1101 E 1 
HETATM 40 H H11 RMF . . . M 5 -110.006 55.884 -48.028 0 119.37 ? H11 RMF 1101 E 1 
HETATM 41 H H12 RMF . . . M 5 -109.37 55.131 -46.801 0 119.37 ? H12 RMF 1101 E 1 
HETATM 42 H H92 RMF . . . M 5 -117.183 56.297 -49.458 0 115.85 ? H92 RMF 1101 E 1 
HETATM 43 H H112 RMF . . . M 5 -115.426 59.054 -49.053 0 115.2 ? H112 RMF 1101 E 1 
HETATM 44 H H111 RMF . . . M 5 -114.434 59.707 -48.006 0 115.2 ? H111 RMF 1101 E 1 
HETATM 45 H H122 RMF . . . M 5 -114.654 60.434 -50.732 0 119.35 ? H122 RMF 1101 E 1 
HETATM 46 H H121 RMF . . . M 5 -115.084 61.344 -49.505 0 119.35 ? H121 RMF 1101 E 1 
HETATM 47 H H132 RMF . . . M 5 -112.28 60.045 -51.082 0 119.61 ? H132 RMF 1101 E 1 
HETATM 48 H H131 RMF . . . M 5 -111.258 60.727 -50.077 0 119.61 ? H131 RMF 1101 E 1 
HETATM 49 H H141 RMF . . . M 5 -111.522 58.438 -49.601 0 117.23 ? H141 RMF 1101 E 1 
HETATM 50 H H142 RMF . . . M 5 -111.952 59.327 -48.364 0 117.23 ? H142 RMF 1101 E 1 
HETATM 51 H H181 RMF . . . M 5 -109.035 61.024 -47.263 0 132.72 ? H181 RMF 1101 E 1 
HETATM 52 H H211 RMF . . . M 5 -108.998 59.015 -43.02 0 131.19 ? H211 RMF 1101 E 1 
HETATM 53 H H13 RMF . . . M 5 -111.413 54.836 -45.96 0 117.21 ? H13 RMF 1101 E 1 
HETATM 54 H H91 RMF . . . M 5 -109.642 58.323 -48.021 0 122.85 ? H91 RMF 1101 E 1 
#
_model_server_stats.io_time_ms              140 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           54 
#