data_8BU6
#
_model_server_result.job_id            W1GE5Lsxtc932tmSQkxIWA 
_model_server_result.datetime_utc      '2024-11-07 00:35:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    8BU6 
#
_exptl.entry_id    8BU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.466 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BU6 
_cell.length_a            249.272 
_cell.length_b            249.272 
_cell.length_c            220.107 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L 1 1 
D,E,F,M,N,O 2 1 
G,H,I,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 M N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 G CYS 18 1_555 A SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 G SG CYS 22 A CYS 18 1_555 G SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 B C TYR 184 H TYR 892 1_555 B N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 B C TPO 185 H TPO 893 1_555 B N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 H C TYR 184 B TYR 892 1_555 H N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 H C TPO 185 B TPO 893 1_555 H N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C21 H22 N10 O' 
_chem_comp.formula_weight    430.466 
_chem_comp.id                RQE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 RQE sing 275 n n 
N1 C21 RQE sing 276 n y 
N1 N2 RQE sing 277 n y 
C21 C3 RQE doub 278 n y 
N2 C2 RQE doub 279 n y 
C3 C2 RQE sing 280 n y 
C3 N3 RQE sing 281 n n 
C4 N3 RQE sing 282 n y 
C4 N4 RQE doub 283 n y 
N3 C20 RQE sing 284 n y 
N4 C5 RQE sing 285 n y 
C20 C5 RQE doub 286 n y 
C20 N10 RQE sing 287 n y 
C5 C6 RQE sing 288 n y 
N10 C15 RQE doub 289 n y 
C6 N5 RQE sing 290 n n 
C6 N8 RQE doub 291 n y 
C15 N8 RQE sing 292 n y 
C15 N9 RQE sing 293 n n 
N5 C7 RQE sing 294 n n 
N9 C16 RQE sing 295 n n 
N9 C19 RQE sing 296 n n 
C16 C17 RQE sing 297 n n 
C19 C18 RQE sing 298 n n 
C7 C8 RQE sing 299 n n 
C17 O1 RQE sing 300 n n 
C8 N6 RQE doub 301 n y 
C8 N7 RQE sing 302 n y 
N6 C9 RQE sing 303 n y 
C18 O1 RQE sing 304 n n 
N7 C10 RQE sing 305 n y 
C9 C10 RQE doub 306 n y 
C9 C14 RQE sing 307 n y 
C10 C11 RQE sing 308 n y 
C14 C13 RQE doub 309 n y 
C11 C12 RQE doub 310 n y 
C13 C12 RQE sing 311 n y 
C2 H4 RQE sing 312 n n 
C7 H7 RQE sing 313 n n 
C7 H8 RQE sing 314 n n 
C12 H10 RQE sing 315 n n 
C14 H12 RQE sing 316 n n 
C16 H15 RQE sing 317 n n 
C16 H14 RQE sing 318 n n 
C17 H16 RQE sing 319 n n 
C17 H17 RQE sing 320 n n 
C18 H19 RQE sing 321 n n 
C18 H18 RQE sing 322 n n 
C19 H20 RQE sing 323 n n 
C19 H21 RQE sing 324 n n 
C11 H9 RQE sing 325 n n 
C1 H3 RQE sing 326 n n 
C1 H1 RQE sing 327 n n 
C1 H2 RQE sing 328 n n 
C13 H11 RQE sing 329 n n 
C21 H22 RQE sing 330 n n 
C4 H5 RQE sing 331 n n 
N5 H6 RQE sing 332 n n 
N7 H13 RQE sing 333 n n 
#
_atom_sites.entry_id                     8BU6 
_atom_sites.fract_transf_matrix[1][1]    0.004012 
_atom_sites.fract_transf_matrix[1][2]    0.002316 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004632 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 G 1 1201 3 SO4 SO4 . 
K 5 RQE H 1 1101 1101 RQE D55 . 
L 4 SO4 I 1 301 2 SO4 SO4 . 
M 5 RQE E 1 1101 1101 RQE D55 . 
N 4 SO4 F 1 301 5 SO4 SO4 . 
O 4 SO4 F 1 302 6 SO4 SO4 . 
P 4 SO4 A 1 1201 4 SO4 SO4 . 
Q 5 RQE B 1 1101 1101 RQE D55 . 
R 4 SO4 C 1 301 1 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 RQE . . . M 5 -116.741 54.873 -48.022 1 111.63 ? C3 RQE 1101 E 1 
HETATM 2 C C2 RQE . . . M 5 -117.393 55.965 -48.598 1 113.46 ? C2 RQE 1101 E 1 
HETATM 3 C C5 RQE . . . M 5 -113.356 55.421 -47.005 1 115.47 ? C5 RQE 1101 E 1 
HETATM 4 C C6 RQE . . . M 5 -112.196 56.219 -47.056 1 120.95 ? C6 RQE 1101 E 1 
HETATM 5 C C9 RQE . . . M 5 -107.649 58.034 -44.452 1 143.1 ? C9 RQE 1101 E 1 
HETATM 6 C C8 RQE . . . M 5 -108.993 57.238 -45.921 1 126.99 ? C8 RQE 1101 E 1 
HETATM 7 C C7 RQE . . . M 5 -109.745 56.33 -46.84 1 123.68 ? C7 RQE 1101 E 1 
HETATM 8 C C12 RQE . . . M 5 -107.157 60.617 -43.613 1 129.82 ? C12 RQE 1101 E 1 
HETATM 9 C C14 RQE . . . M 5 -106.705 58.249 -43.448 1 128.54 ? C14 RQE 1101 E 1 
HETATM 10 C C16 RQE . . . M 5 -114.229 59.988 -48.885 1 120.69 ? C16 RQE 1101 E 1 
HETATM 11 C C17 RQE . . . M 5 -113.991 61.012 -49.951 1 122.22 ? C17 RQE 1101 E 1 
HETATM 12 C C18 RQE . . . M 5 -111.796 60.273 -50.279 1 119.42 ? C18 RQE 1101 E 1 
HETATM 13 C C19 RQE . . . M 5 -112.571 58.993 -50.353 1 118.54 ? C19 RQE 1101 E 1 
HETATM 14 C C20 RQE . . . M 5 -114.449 55.848 -47.703 1 113.96 ? C20 RQE 1101 E 1 
HETATM 15 C C11 RQE . . . M 5 -108.09 60.426 -44.607 1 130.26 ? C11 RQE 1101 E 1 
HETATM 16 C C1 RQE . . . M 5 -119.898 53.555 -49.138 1 115.25 ? C1 RQE 1101 E 1 
HETATM 17 C C10 RQE . . . M 5 -108.322 59.118 -45.012 1 128.24 ? C10 RQE 1101 E 1 
HETATM 18 C C13 RQE . . . M 5 -106.473 59.543 -43.042 1 128.89 ? C13 RQE 1101 E 1 
HETATM 19 C C15 RQE . . . M 5 -113.38 57.719 -48.409 1 119.88 ? C15 RQE 1101 E 1 
HETATM 20 C C21 RQE . . . M 5 -117.59 53.82 -48.168 1 111.81 ? C21 RQE 1101 E 1 
HETATM 21 C C4 RQE . . . M 5 -114.885 53.937 -46.7 1 114.21 ? C4 RQE 1101 E 1 
HETATM 22 N N1 RQE . . . M 5 -118.702 54.291 -48.774 1 112.41 ? N1 RQE 1101 E 1 
HETATM 23 N N10 RQE . . . M 5 -114.508 56.977 -48.411 1 114.31 ? N10 RQE 1101 E 1 
HETATM 24 N N2 RQE . . . M 5 -118.597 55.611 -49.038 1 116.59 ? N2 RQE 1101 E 1 
HETATM 25 N N3 RQE . . . M 5 -115.432 54.909 -47.49 1 113.53 ? N3 RQE 1101 E 1 
HETATM 26 N N4 RQE . . . M 5 -113.65 54.219 -46.378 1 116.18 ? N4 RQE 1101 E 1 
HETATM 27 N N5 RQE . . . M 5 -111.053 55.895 -46.399 1 120.02 ? N5 RQE 1101 E 1 
HETATM 28 N N6 RQE . . . M 5 -108.082 56.85 -45.049 1 135.08 ? N6 RQE 1101 E 1 
HETATM 29 N N7 RQE . . . M 5 -109.165 58.574 -45.954 1 126.5 ? N7 RQE 1101 E 1 
HETATM 30 N N8 RQE . . . M 5 -112.23 57.355 -47.789 1 91.68 ? N8 RQE 1101 E 1 
HETATM 31 N N9 RQE . . . M 5 -113.371 58.843 -49.144 1 115.07 ? N9 RQE 1101 E 1 
HETATM 32 O O1 RQE . . . M 5 -112.625 61.4 -50.024 1 120.43 ? O1 RQE 1101 E 1 
HETATM 33 H H4 RQE . . . M 5 -117.05 56.841 -48.677 0 137.18 ? H4 RQE 1101 E 1 
HETATM 34 H H7 RQE . . . M 5 -109.853 56.787 -47.693 0 149.44 ? H7 RQE 1101 E 1 
HETATM 35 H H8 RQE . . . M 5 -109.202 55.537 -46.991 0 149.44 ? H8 RQE 1101 E 1 
HETATM 36 H H10 RQE . . . M 5 -106.977 61.49 -43.313 0 156.8 ? H10 RQE 1101 E 1 
HETATM 37 H H12 RQE . . . M 5 -106.243 57.528 -43.062 0 155.26 ? H12 RQE 1101 E 1 
HETATM 38 H H15 RQE . . . M 5 -114.027 60.366 -48.007 0 145.84 ? H15 RQE 1101 E 1 
HETATM 39 H H14 RQE . . . M 5 -115.166 59.712 -48.891 0 145.84 ? H14 RQE 1101 E 1 
HETATM 40 H H16 RQE . . . M 5 -114.539 61.804 -49.765 0 147.68 ? H16 RQE 1101 E 1 
HETATM 41 H H17 RQE . . . M 5 -114.267 60.646 -50.817 0 147.68 ? H17 RQE 1101 E 1 
HETATM 42 H H19 RQE . . . M 5 -111.324 60.411 -51.127 0 144.32 ? H19 RQE 1101 E 1 
HETATM 43 H H18 RQE . . . M 5 -111.128 60.202 -49.566 0 144.32 ? H18 RQE 1101 E 1 
HETATM 44 H H20 RQE . . . M 5 -113.154 59.003 -51.137 0 143.27 ? H20 RQE 1101 E 1 
HETATM 45 H H21 RQE . . . M 5 -111.956 58.238 -50.439 0 143.27 ? H21 RQE 1101 E 1 
HETATM 46 H H9 RQE . . . M 5 -108.547 61.147 -44.993 0 157.34 ? H9 RQE 1101 E 1 
HETATM 47 H H3 RQE . . . M 5 -120.679 54.083 -48.912 0 139.32 ? H3 RQE 1101 E 1 
HETATM 48 H H1 RQE . . . M 5 -119.919 52.718 -48.651 0 139.32 ? H1 RQE 1101 E 1 
HETATM 49 H H2 RQE . . . M 5 -119.888 53.379 -50.091 0 139.32 ? H2 RQE 1101 E 1 
HETATM 50 H H11 RQE . . . M 5 -105.841 59.706 -42.367 0 155.69 ? H11 RQE 1101 E 1 
HETATM 51 H H22 RQE . . . M 5 -117.429 52.929 -47.896 0 135.19 ? H22 RQE 1101 E 1 
HETATM 52 H H5 RQE . . . M 5 -115.335 53.161 -46.421 0 138.08 ? H5 RQE 1101 E 1 
HETATM 53 H H6 RQE . . . M 5 -111.109 55.406 -45.682 0 145.05 ? H6 RQE 1101 E 1 
HETATM 54 H H13 RQE . . . M 5 -109.714 59.017 -46.481 0 152.82 ? H13 RQE 1101 E 1 
#
_model_server_stats.io_time_ms              144 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           54 
#