data_8BU6 # _model_server_result.job_id 77ewciefGu72EyjJTzpemA _model_server_result.datetime_utc '2024-11-29 23:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1101}' # _entry.id 8BU6 # _exptl.entry_id 8BU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.466 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BU6 _cell.length_a 249.272 _cell.length_b 249.272 _cell.length_c 220.107 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L 1 1 D,E,F,M,N,O 2 1 G,H,I,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 M N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 G CYS 18 1_555 A SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 G SG CYS 22 A CYS 18 1_555 G SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 B C TYR 184 H TYR 892 1_555 B N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C TPO 185 H TPO 893 1_555 B N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 H C TYR 184 B TYR 892 1_555 H N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 H C TPO 185 B TPO 893 1_555 H N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H22 N10 O' _chem_comp.formula_weight 430.466 _chem_comp.id RQE _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 RQE sing 275 n n N1 C21 RQE sing 276 n y N1 N2 RQE sing 277 n y C21 C3 RQE doub 278 n y N2 C2 RQE doub 279 n y C3 C2 RQE sing 280 n y C3 N3 RQE sing 281 n n C4 N3 RQE sing 282 n y C4 N4 RQE doub 283 n y N3 C20 RQE sing 284 n y N4 C5 RQE sing 285 n y C20 C5 RQE doub 286 n y C20 N10 RQE sing 287 n y C5 C6 RQE sing 288 n y N10 C15 RQE doub 289 n y C6 N5 RQE sing 290 n n C6 N8 RQE doub 291 n y C15 N8 RQE sing 292 n y C15 N9 RQE sing 293 n n N5 C7 RQE sing 294 n n N9 C16 RQE sing 295 n n N9 C19 RQE sing 296 n n C16 C17 RQE sing 297 n n C19 C18 RQE sing 298 n n C7 C8 RQE sing 299 n n C17 O1 RQE sing 300 n n C8 N6 RQE doub 301 n y C8 N7 RQE sing 302 n y N6 C9 RQE sing 303 n y C18 O1 RQE sing 304 n n N7 C10 RQE sing 305 n y C9 C10 RQE doub 306 n y C9 C14 RQE sing 307 n y C10 C11 RQE sing 308 n y C14 C13 RQE doub 309 n y C11 C12 RQE doub 310 n y C13 C12 RQE sing 311 n y C2 H4 RQE sing 312 n n C7 H7 RQE sing 313 n n C7 H8 RQE sing 314 n n C12 H10 RQE sing 315 n n C14 H12 RQE sing 316 n n C16 H15 RQE sing 317 n n C16 H14 RQE sing 318 n n C17 H16 RQE sing 319 n n C17 H17 RQE sing 320 n n C18 H19 RQE sing 321 n n C18 H18 RQE sing 322 n n C19 H20 RQE sing 323 n n C19 H21 RQE sing 324 n n C11 H9 RQE sing 325 n n C1 H3 RQE sing 326 n n C1 H1 RQE sing 327 n n C1 H2 RQE sing 328 n n C13 H11 RQE sing 329 n n C21 H22 RQE sing 330 n n C4 H5 RQE sing 331 n n N5 H6 RQE sing 332 n n N7 H13 RQE sing 333 n n # _atom_sites.entry_id 8BU6 _atom_sites.fract_transf_matrix[1][1] 0.004012 _atom_sites.fract_transf_matrix[1][2] 0.002316 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 G 1 1201 3 SO4 SO4 . K 5 RQE H 1 1101 1101 RQE D55 . L 4 SO4 I 1 301 2 SO4 SO4 . M 5 RQE E 1 1101 1101 RQE D55 . N 4 SO4 F 1 301 5 SO4 SO4 . O 4 SO4 F 1 302 6 SO4 SO4 . P 4 SO4 A 1 1201 4 SO4 SO4 . Q 5 RQE B 1 1101 1101 RQE D55 . R 4 SO4 C 1 301 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 RQE . . . Q 5 -129.358 8.649 11.429 1 108.33 ? C3 RQE 1101 B 1 HETATM 2 C C2 RQE . . . Q 5 -130.175 8.267 12.494 1 109.14 ? C2 RQE 1101 B 1 HETATM 3 C C5 RQE . . . Q 5 -130.618 11.461 9.612 1 108.43 ? C5 RQE 1101 B 1 HETATM 4 C C6 RQE . . . Q 5 -131.656 12.398 9.427 1 113.04 ? C6 RQE 1101 B 1 HETATM 5 C C9 RQE . . . Q 5 -132.805 17.55 8.044 1 116.89 ? C9 RQE 1101 B 1 HETATM 6 C C8 RQE . . . Q 5 -132.895 15.412 8.181 1 115.53 ? C8 RQE 1101 B 1 HETATM 7 C C7 RQE . . . Q 5 -132.795 13.947 7.903 1 114.55 ? C7 RQE 1101 B 1 HETATM 8 C C12 RQE . . . Q 5 -133.548 19.539 9.803 1 116.67 ? C12 RQE 1101 B 1 HETATM 9 C C14 RQE . . . Q 5 -132.62 18.878 7.669 1 117.15 ? C14 RQE 1101 B 1 HETATM 10 C C16 RQE . . . Q 5 -133.691 11.058 13.471 1 116.23 ? C16 RQE 1101 B 1 HETATM 11 C C17 RQE . . . Q 5 -135.048 10.896 14.101 1 120.38 ? C17 RQE 1101 B 1 HETATM 12 C C18 RQE . . . Q 5 -135.925 12.512 12.596 1 116.45 ? C18 RQE 1101 B 1 HETATM 13 C C19 RQE . . . Q 5 -135.222 11.594 11.642 1 113.47 ? C19 RQE 1101 B 1 HETATM 14 C C20 RQE . . . Q 5 -130.774 10.55 10.608 1 108.98 ? C20 RQE 1101 B 1 HETATM 15 C C11 RQE . . . Q 5 -133.741 18.232 10.189 1 116.12 ? C11 RQE 1101 B 1 HETATM 16 C C1 RQE . . . Q 5 -127.705 5.776 12.835 1 115.33 ? C1 RQE 1101 B 1 HETATM 17 C C10 RQE . . . Q 5 -133.358 17.25 9.287 1 117.23 ? C10 RQE 1101 B 1 HETATM 18 C C13 RQE . . . Q 5 -132.997 19.856 8.559 1 118.17 ? C13 RQE 1101 B 1 HETATM 19 C C15 RQE . . . Q 5 -132.784 11.422 11.225 1 111.49 ? C15 RQE 1101 B 1 HETATM 20 C C21 RQE . . . Q 5 -128.323 7.755 11.41 1 109.16 ? C21 RQE 1101 B 1 HETATM 21 C C4 RQE . . . Q 5 -128.86 10.211 9.573 1 110.05 ? C4 RQE 1101 B 1 HETATM 22 N N1 RQE . . . Q 5 -128.53 6.902 12.436 1 112.48 ? N1 RQE 1101 B 1 HETATM 23 N N10 RQE . . . Q 5 -131.827 10.49 11.423 1 109.85 ? N10 RQE 1101 B 1 HETATM 24 N N2 RQE . . . Q 5 -129.666 7.201 13.105 1 113.01 ? N2 RQE 1101 B 1 HETATM 25 N N3 RQE . . . Q 5 -129.654 9.747 10.583 1 108.6 ? N3 RQE 1101 B 1 HETATM 26 N N4 RQE . . . Q 5 -129.409 11.231 8.966 1 109.71 ? N4 RQE 1101 B 1 HETATM 27 N N5 RQE . . . Q 5 -131.605 13.35 8.472 1 113.02 ? N5 RQE 1101 B 1 HETATM 28 N N6 RQE . . . Q 5 -132.52 16.372 7.357 1 116.81 ? N6 RQE 1101 B 1 HETATM 29 N N7 RQE . . . Q 5 -133.406 15.877 9.338 1 115.51 ? N7 RQE 1101 B 1 HETATM 30 N N8 RQE . . . Q 5 -132.724 12.367 10.26 1 104.64 ? N8 RQE 1101 B 1 HETATM 31 N N9 RQE . . . Q 5 -133.842 11.372 12.055 1 112.37 ? N9 RQE 1101 B 1 HETATM 32 O O1 RQE . . . Q 5 -135.889 12.035 13.939 1 121.12 ? O1 RQE 1101 B 1 HETATM 33 H H4 RQE . . . Q 5 -130.977 8.686 12.763 0 131.99 ? H4 RQE 1101 B 1 HETATM 34 H H7 RQE . . . Q 5 -133.578 13.499 8.268 0 138.48 ? H7 RQE 1101 B 1 HETATM 35 H H8 RQE . . . Q 5 -132.79 13.805 6.941 0 138.48 ? H8 RQE 1101 B 1 HETATM 36 H H10 RQE . . . Q 5 -133.793 20.234 10.389 0 141.02 ? H10 RQE 1101 B 1 HETATM 37 H H12 RQE . . . Q 5 -132.249 19.095 6.833 0 141.6 ? H12 RQE 1101 B 1 HETATM 38 H H15 RQE . . . Q 5 -133.204 11.776 13.919 0 140.5 ? H15 RQE 1101 B 1 HETATM 39 H H14 RQE . . . Q 5 -133.18 10.231 13.573 0 140.5 ? H14 RQE 1101 B 1 HETATM 40 H H16 RQE . . . Q 5 -134.934 10.723 15.059 0 145.48 ? H16 RQE 1101 B 1 HETATM 41 H H17 RQE . . . Q 5 -135.492 10.118 13.701 0 145.48 ? H17 RQE 1101 B 1 HETATM 42 H H19 RQE . . . Q 5 -136.86 12.609 12.318 0 140.76 ? H19 RQE 1101 B 1 HETATM 43 H H18 RQE . . . Q 5 -135.502 13.395 12.561 0 140.76 ? H18 RQE 1101 B 1 HETATM 44 H H20 RQE . . . Q 5 -135.692 10.738 11.609 0 137.19 ? H20 RQE 1101 B 1 HETATM 45 H H21 RQE . . . Q 5 -135.234 11.985 10.747 0 137.19 ? H21 RQE 1101 B 1 HETATM 46 H H9 RQE . . . Q 5 -134.112 18.017 11.021 0 140.37 ? H9 RQE 1101 B 1 HETATM 47 H H3 RQE . . . Q 5 -127.144 6.039 13.58 0 139.42 ? H3 RQE 1101 B 1 HETATM 48 H H1 RQE . . . Q 5 -127.149 5.506 12.088 0 139.42 ? H1 RQE 1101 B 1 HETATM 49 H H2 RQE . . . Q 5 -128.275 5.039 13.1 0 139.42 ? H2 RQE 1101 B 1 HETATM 50 H H11 RQE . . . Q 5 -132.88 20.758 8.325 0 142.82 ? H11 RQE 1101 B 1 HETATM 51 H H22 RQE . . . Q 5 -127.605 7.741 10.797 0 132.01 ? H22 RQE 1101 B 1 HETATM 52 H H5 RQE . . . Q 5 -128.025 9.848 9.34 0 133.08 ? H5 RQE 1101 B 1 HETATM 53 H H6 RQE . . . Q 5 -130.827 13.616 8.187 0 136.65 ? H6 RQE 1101 B 1 HETATM 54 H H13 RQE . . . Q 5 -133.714 15.391 10.004 0 139.63 ? H13 RQE 1101 B 1 # _model_server_stats.io_time_ms 133 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #