data_8BU7 # _model_server_result.job_id j9VR1zhIbNiKHo4k3Z4GwA _model_server_result.datetime_utc '2024-11-29 15:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":301}' # _entry.id 8BU7 # _exptl.entry_id 8BU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BU7 _cell.length_a 248.683 _cell.length_b 248.683 _cell.length_c 218.597 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 D,E,F,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 2 1 G,H,I,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 V N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8BU7 _atom_sites.fract_transf_matrix[1][1] 0.004021 _atom_sites.fract_transf_matrix[1][2] 0.002322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 EDO A 1 1201 1201 EDO EDO . K 5 RS5 A 1 1202 1101 RS5 195 . L 6 SO4 A 1 1203 3 SO4 SO4 . M 6 SO4 A 1 1204 5 SO4 SO4 . N 6 SO4 A 1 1205 6 SO4 SO4 . O 6 SO4 A 1 1206 10 SO4 SO4 . P 6 SO4 A 1 1207 11 SO4 SO4 . Q 6 SO4 A 1 1208 27 SO4 SO4 . R 6 SO4 C 1 301 4 SO4 SO4 . S 6 SO4 C 1 302 16 SO4 SO4 . T 6 SO4 C 1 303 22 SO4 SO4 . U 6 SO4 C 1 304 30 SO4 SO4 . V 4 EDO D 1 1201 1201 EDO EDO . W 6 SO4 D 1 1202 2 SO4 SO4 . X 6 SO4 D 1 1203 7 SO4 SO4 . Y 6 SO4 D 1 1204 9 SO4 SO4 . Z 6 SO4 D 1 1205 20 SO4 SO4 . AA 6 SO4 D 1 1206 25 SO4 SO4 . BA 6 SO4 D 1 1207 29 SO4 SO4 . CA 5 RS5 E 1 1101 1101 RS5 195 . DA 4 EDO F 1 301 301 EDO EDO . EA 6 SO4 F 1 302 17 SO4 SO4 . FA 6 SO4 F 1 303 21 SO4 SO4 . GA 6 SO4 F 1 304 26 SO4 SO4 . HA 6 SO4 F 1 305 31 SO4 SO4 . IA 5 RS5 G 1 1201 1101 RS5 195 . JA 6 SO4 G 1 1202 1 SO4 SO4 . KA 6 SO4 G 1 1203 8 SO4 SO4 . LA 6 SO4 G 1 1204 13 SO4 SO4 . MA 6 SO4 G 1 1205 14 SO4 SO4 . NA 6 SO4 G 1 1206 15 SO4 SO4 . OA 6 SO4 G 1 1207 19 SO4 SO4 . PA 6 SO4 G 1 1208 28 SO4 SO4 . QA 6 SO4 H 1 1101 33 SO4 SO4 . RA 6 SO4 I 1 301 12 SO4 SO4 . SA 6 SO4 I 1 302 18 SO4 SO4 . TA 6 SO4 I 1 303 32 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . DA 4 100.307 102.931 0.06 1 100.66 ? C1 EDO 301 F 1 HETATM 2 O O1 EDO . . . DA 4 100.72 101.804 -0.739 1 103.56 ? O1 EDO 301 F 1 HETATM 3 C C2 EDO . . . DA 4 99.099 103.651 -0.599 1 103.12 ? C2 EDO 301 F 1 HETATM 4 O O2 EDO . . . DA 4 99.424 104.061 -1.936 1 104.15 ? O2 EDO 301 F 1 HETATM 5 H H11 EDO . . . DA 4 101.138 103.631 0.164 0 120.79 ? H11 EDO 301 F 1 HETATM 6 H H12 EDO . . . DA 4 100.029 102.589 1.06 0 120.79 ? H12 EDO 301 F 1 HETATM 7 H HO1 EDO . . . DA 4 101.439 101.337 -0.291 0 124.27 ? HO1 EDO 301 F 1 HETATM 8 H H21 EDO . . . DA 4 98.239 102.977 -0.622 0 123.74 ? H21 EDO 301 F 1 HETATM 9 H H22 EDO . . . DA 4 98.824 104.525 -0.005 0 123.74 ? H22 EDO 301 F 1 HETATM 10 H HO2 EDO . . . DA 4 98.651 104.475 -2.343 0 124.98 ? HO2 EDO 301 F 1 # _model_server_stats.io_time_ms 364 _model_server_stats.parse_time_ms 77 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 10 #