data_8BUB # _model_server_result.job_id H02-MVEXQek8Hzrr9IBnQQ _model_server_result.datetime_utc '2024-11-26 12:42:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1101}' # _entry.id 8BUB # _exptl.entry_id 8BUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.433 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(5-methyl-2,3-dihydro-1,3-thiazol-2-yl)-3-(5-methylfuran-2-yl)carbonyl-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUB _cell.length_a 247.861 _cell.length_b 247.861 _cell.length_c 220.715 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L 1 1 D,E,H,M,N,O,Q 2 1 F,G,I,P,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 Q N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 D SG CYS 22 D CYS 18 1_555 D SG CYS 317 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 G CYS 18 1_555 F SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 H C TYR 184 E TYR 892 1_555 H N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 H C TPO 185 E TPO 893 1_555 H N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 I C TYR 184 H TYR 892 1_555 I N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 I C TPO 185 H TPO 893 1_555 I N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C14 H17 N3 O3 S2' _chem_comp.formula_weight 339.433 _chem_comp.id RNU _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(5-methyl-2,3-dihydro-1,3-thiazol-2-yl)-3-(5-methylfuran-2-yl)carbonyl-1,3-thiazolidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C2 RNU sing 295 n n C3 C2 RNU doub 296 n n C3 N1 RNU sing 297 n n C2 S1 RNU sing 298 n n N1 C1 RNU sing 299 n n S1 C1 RNU sing 300 n n C1 N2 RNU sing 301 n n N2 C4 RNU sing 302 n n C4 O1 RNU doub 303 n n C4 C6 RNU sing 304 n n C6 C13 RNU sing 305 n n C6 N3 RNU sing 306 n n C13 S2 RNU sing 307 n n S2 C12 RNU sing 308 n n O3 C11 RNU doub 309 n n N3 C11 RNU sing 310 n n N3 C12 RNU sing 311 n n C11 C8 RNU sing 312 n n C8 C7 RNU doub 313 n y C8 O2 RNU sing 314 n y C7 C10 RNU sing 315 n y O2 C9 RNU sing 316 n y C10 C9 RNU doub 317 n y C9 C14 RNU sing 318 n n C1 H1 RNU sing 319 n n C10 H101 RNU sing 320 n n C12 H122 RNU sing 321 n n C12 H121 RNU sing 322 n n C13 H131 RNU sing 323 n n C13 H132 RNU sing 324 n n C14 H143 RNU sing 325 n n C14 H141 RNU sing 326 n n C14 H142 RNU sing 327 n n C3 H31 RNU sing 328 n n C5 H51 RNU sing 329 n n C5 H53 RNU sing 330 n n C5 H52 RNU sing 331 n n C6 H61 RNU sing 332 n n C7 H71 RNU sing 333 n n N1 H2 RNU sing 334 n n N2 H21 RNU sing 335 n n # _atom_sites.entry_id 8BUB _atom_sites.fract_transf_matrix[1][1] 0.004035 _atom_sites.fract_transf_matrix[1][2] 0.002329 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CIT A 1 1201 1201 CIT CIT . K 5 RNU B 1 1101 1101 RNU W08 . L 4 CIT C 1 301 1205 CIT CIT . M 4 CIT D 1 1201 1202 CIT CIT . N 4 CIT F 1 301 301 CIT CIT . O 4 CIT F 1 302 302 CIT CIT . P 4 CIT G 1 1201 1201 CIT CIT . Q 5 RNU E 1 1101 1101 RNU W08 . R 4 CIT H 1 1101 1204 CIT CIT . S 5 RNU H 1 1102 1101 RNU W08 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RNU . . . K 5 -63.396 24.056 -6.541 1 137.92 ? C1 RNU 1101 B 1 HETATM 2 C C10 RNU . . . K 5 -64.368 26.804 1.544 1 143.83 ? C10 RNU 1101 B 1 HETATM 3 C C11 RNU . . . K 5 -64.855 24.468 -1.229 1 143.64 ? C11 RNU 1101 B 1 HETATM 4 C C12 RNU . . . K 5 -62.48 23.68 -0.936 1 148 ? C12 RNU 1101 B 1 HETATM 5 C C13 RNU . . . K 5 -62.851 21.95 -2.775 1 144.69 ? C13 RNU 1101 B 1 HETATM 6 C C14 RNU . . . K 5 -66.631 26.441 2.786 1 147.4 ? C14 RNU 1101 B 1 HETATM 7 C C2 RNU . . . K 5 -62.35 24.855 -8.601 1 135.54 ? C2 RNU 1101 B 1 HETATM 8 C C3 RNU . . . K 5 -63.597 24.378 -8.71 1 136.38 ? C3 RNU 1101 B 1 HETATM 9 C C4 RNU . . . K 5 -63.448 24.008 -4.11 1 140.93 ? C4 RNU 1101 B 1 HETATM 10 C C5 RNU . . . K 5 -61.377 25.264 -9.669 1 135.65 ? C5 RNU 1101 B 1 HETATM 11 C C6 RNU . . . K 5 -63.821 23.104 -2.939 1 143.55 ? C6 RNU 1101 B 1 HETATM 12 C C7 RNU . . . K 5 -63.838 26.212 0.37 1 143.16 ? C7 RNU 1101 B 1 HETATM 13 C C8 RNU . . . K 5 -64.768 25.36 -0.093 1 143.86 ? C8 RNU 1101 B 1 HETATM 14 C C9 RNU . . . K 5 -65.581 26.266 1.753 1 144.76 ? C9 RNU 1101 B 1 HETATM 15 N N1 RNU . . . K 5 -64.202 23.907 -7.554 1 138.67 ? N1 RNU 1101 B 1 HETATM 16 N N2 RNU . . . K 5 -63.657 23.446 -5.327 1 140.31 ? N2 RNU 1101 B 1 HETATM 17 N N3 RNU . . . K 5 -63.757 23.826 -1.663 1 145.17 ? N3 RNU 1101 B 1 HETATM 18 O O1 RNU . . . K 5 -63.03 25.138 -3.94 1 140.8 ? O1 RNU 1101 B 1 HETATM 19 O O2 RNU . . . K 5 -65.854 25.371 0.757 1 144.5 ? O2 RNU 1101 B 1 HETATM 20 O O3 RNU . . . K 5 -65.94 24.302 -1.78 1 142.36 ? O3 RNU 1101 B 1 HETATM 21 S S1 RNU . . . K 5 -61.976 24.959 -6.914 1 137.57 ? S1 RNU 1101 B 1 HETATM 22 S S2 RNU . . . K 5 -61.392 22.782 -2.096 1 170.29 ? S2 RNU 1101 B 1 HETATM 23 H H101 RNU . . . K 5 -63.945 27.461 2.086 0 172.59 ? H101 RNU 1101 B 1 HETATM 24 H H122 RNU . . . K 5 -62.117 24.562 -0.714 0 177.59 ? H122 RNU 1101 B 1 HETATM 25 H H121 RNU . . . K 5 -62.619 23.174 -0.11 0 177.59 ? H121 RNU 1101 B 1 HETATM 26 H H131 RNU . . . K 5 -62.647 21.528 -3.615 0 173.63 ? H131 RNU 1101 B 1 HETATM 27 H H132 RNU . . . K 5 -63.183 21.285 -2.163 0 173.63 ? H132 RNU 1101 B 1 HETATM 28 H H143 RNU . . . K 5 -67.13 25.615 2.889 0 176.88 ? H143 RNU 1101 B 1 HETATM 29 H H141 RNU . . . K 5 -67.238 27.15 2.517 0 176.88 ? H141 RNU 1101 B 1 HETATM 30 H H142 RNU . . . K 5 -66.22 26.676 3.633 0 176.88 ? H142 RNU 1101 B 1 HETATM 31 H H31 RNU . . . K 5 -64.057 24.356 -9.526 0 163.65 ? H31 RNU 1101 B 1 HETATM 32 H H51 RNU . . . K 5 -61.547 24.757 -10.473 0 162.79 ? H51 RNU 1101 B 1 HETATM 33 H H53 RNU . . . K 5 -60.475 25.093 -9.368 0 162.79 ? H53 RNU 1101 B 1 HETATM 34 H H52 RNU . . . K 5 -61.478 26.206 -9.856 0 162.79 ? H52 RNU 1101 B 1 HETATM 35 H H61 RNU . . . K 5 -64.737 22.761 -3.078 0 172.26 ? H61 RNU 1101 B 1 HETATM 36 H H71 RNU . . . K 5 -62.999 26.382 -0.012 0 171.8 ? H71 RNU 1101 B 1 HETATM 37 H H21 RNU . . . K 5 -63.979 22.644 -5.349 0 168.38 ? H21 RNU 1101 B 1 # _model_server_stats.io_time_ms 162 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 760 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 37 #