data_8BUB
#
_model_server_result.job_id            vXl4i57zY7KQZL752SXgfA 
_model_server_result.datetime_utc      '2024-11-26 12:50:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bub 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1101}' 
#
_entry.id    8BUB 
#
_exptl.entry_id    8BUB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.433 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-(5-methyl-2,3-dihydro-1,3-thiazol-2-yl)-3-(5-methylfuran-2-yl)carbonyl-1,3-thiazolidine-4-carboxamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUB 
_cell.length_a            247.861 
_cell.length_b            247.861 
_cell.length_c            220.715 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L 1 1 
D,E,H,M,N,O,Q 2 1 
F,G,I,P,R,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 Q N N 
? 5 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 D SG CYS 22 D CYS 18 1_555 D SG CYS 317 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 F SG CYS 22 G CYS 18 1_555 F SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 H C TYR 184 E TYR 892 1_555 H N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 H C TPO 185 E TPO 893 1_555 H N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 I C TYR 184 H TYR 892 1_555 I N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 I C TPO 185 H TPO 893 1_555 I N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C14 H17 N3 O3 S2' 
_chem_comp.formula_weight    339.433 
_chem_comp.id                RNU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-(5-methyl-2,3-dihydro-1,3-thiazol-2-yl)-3-(5-methylfuran-2-yl)carbonyl-1,3-thiazolidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C2 RNU sing 295 n n 
C3 C2 RNU doub 296 n n 
C3 N1 RNU sing 297 n n 
C2 S1 RNU sing 298 n n 
N1 C1 RNU sing 299 n n 
S1 C1 RNU sing 300 n n 
C1 N2 RNU sing 301 n n 
N2 C4 RNU sing 302 n n 
C4 O1 RNU doub 303 n n 
C4 C6 RNU sing 304 n n 
C6 C13 RNU sing 305 n n 
C6 N3 RNU sing 306 n n 
C13 S2 RNU sing 307 n n 
S2 C12 RNU sing 308 n n 
O3 C11 RNU doub 309 n n 
N3 C11 RNU sing 310 n n 
N3 C12 RNU sing 311 n n 
C11 C8 RNU sing 312 n n 
C8 C7 RNU doub 313 n y 
C8 O2 RNU sing 314 n y 
C7 C10 RNU sing 315 n y 
O2 C9 RNU sing 316 n y 
C10 C9 RNU doub 317 n y 
C9 C14 RNU sing 318 n n 
C1 H1 RNU sing 319 n n 
C10 H101 RNU sing 320 n n 
C12 H122 RNU sing 321 n n 
C12 H121 RNU sing 322 n n 
C13 H131 RNU sing 323 n n 
C13 H132 RNU sing 324 n n 
C14 H143 RNU sing 325 n n 
C14 H141 RNU sing 326 n n 
C14 H142 RNU sing 327 n n 
C3 H31 RNU sing 328 n n 
C5 H51 RNU sing 329 n n 
C5 H53 RNU sing 330 n n 
C5 H52 RNU sing 331 n n 
C6 H61 RNU sing 332 n n 
C7 H71 RNU sing 333 n n 
N1 H2 RNU sing 334 n n 
N2 H21 RNU sing 335 n n 
#
_atom_sites.entry_id                     8BUB 
_atom_sites.fract_transf_matrix[1][1]    0.004035 
_atom_sites.fract_transf_matrix[1][2]    0.002329 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004659 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 CIT A 1 1201 1201 CIT CIT . 
K 5 RNU B 1 1101 1101 RNU W08 . 
L 4 CIT C 1 301 1205 CIT CIT . 
M 4 CIT D 1 1201 1202 CIT CIT . 
N 4 CIT F 1 301 301 CIT CIT . 
O 4 CIT F 1 302 302 CIT CIT . 
P 4 CIT G 1 1201 1201 CIT CIT . 
Q 5 RNU E 1 1101 1101 RNU W08 . 
R 4 CIT H 1 1101 1204 CIT CIT . 
S 5 RNU H 1 1102 1101 RNU W08 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RNU . . . Q 5 -113.371 54.398 -45.974 1 136.43 ? C1 RNU 1101 E 1 
HETATM 2 C C10 RNU . . . Q 5 -108.442 61.262 -43.328 1 140.59 ? C10 RNU 1101 E 1 
HETATM 3 C C11 RNU . . . Q 5 -109.346 57.89 -44.462 1 142.69 ? C11 RNU 1101 E 1 
HETATM 4 C C12 RNU . . . Q 5 -109.99 58.855 -46.706 1 146.89 ? C12 RNU 1101 E 1 
HETATM 5 C C13 RNU . . . Q 5 -109.882 56.466 -47.664 1 142.3 ? C13 RNU 1101 E 1 
HETATM 6 C C14 RNU . . . Q 5 -106.913 60.585 -41.324 1 137.31 ? C14 RNU 1101 E 1 
HETATM 7 C C2 RNU . . . Q 5 -115.727 53.851 -46.311 1 140.48 ? C2 RNU 1101 E 1 
HETATM 8 C C3 RNU . . . Q 5 -114.937 52.854 -45.889 1 136.78 ? C3 RNU 1101 E 1 
HETATM 9 C C4 RNU . . . Q 5 -111.713 56.17 -45.928 1 145.52 ? C4 RNU 1101 E 1 
HETATM 10 C C5 RNU . . . Q 5 -117.147 53.822 -46.796 1 147.55 ? C5 RNU 1101 E 1 
HETATM 11 C C6 RNU . . . Q 5 -110.234 56.439 -46.186 1 142.21 ? C6 RNU 1101 E 1 
HETATM 12 C C7 RNU . . . Q 5 -109.162 60.473 -44.263 1 144.9 ? C7 RNU 1101 E 1 
HETATM 13 C C8 RNU . . . Q 5 -108.942 59.186 -43.945 1 150.37 ? C8 RNU 1101 E 1 
HETATM 14 C C9 RNU . . . Q 5 -107.811 60.418 -42.493 1 144.1 ? C9 RNU 1101 E 1 
HETATM 15 N N1 RNU . . . Q 5 -113.594 53.145 -45.697 1 134.85 ? N1 RNU 1101 E 1 
HETATM 16 N N2 RNU . . . Q 5 -112.085 54.882 -46.136 1 146.05 ? N2 RNU 1101 E 1 
HETATM 17 N N3 RNU . . . Q 5 -109.841 57.77 -45.708 1 143.98 ? N3 RNU 1101 E 1 
HETATM 18 O O1 RNU . . . Q 5 -112.454 57.037 -45.507 1 141.59 ? O1 RNU 1101 E 1 
HETATM 19 O O2 RNU . . . Q 5 -108.1 59.132 -42.853 1 151.3 ? O2 RNU 1101 E 1 
HETATM 20 O O3 RNU . . . Q 5 -109.2 56.896 -43.76 1 140.74 ? O3 RNU 1101 E 1 
HETATM 21 S S1 RNU . . . Q 5 -114.811 55.315 -46.215 1 151.14 ? S1 RNU 1101 E 1 
HETATM 22 S S2 RNU . . . Q 5 -110.612 58.032 -48.214 1 173.26 ? S2 RNU 1101 E 1 
HETATM 23 H H101 RNU . . . Q 5 -108.408 62.212 -43.295 0 168.71 ? H101 RNU 1101 E 1 
HETATM 24 H H122 RNU . . . Q 5 -109.124 59.283 -46.865 0 176.27 ? H122 RNU 1101 E 1 
HETATM 25 H H121 RNU . . . Q 5 -110.624 59.525 -46.378 0 176.27 ? H121 RNU 1101 E 1 
HETATM 26 H H131 RNU . . . Q 5 -108.931 56.466 -47.805 0 170.76 ? H131 RNU 1101 E 1 
HETATM 27 H H132 RNU . . . Q 5 -110.27 55.725 -48.138 0 170.76 ? H132 RNU 1101 E 1 
HETATM 28 H H143 RNU . . . Q 5 -107.44 60.629 -40.51 0 164.78 ? H143 RNU 1101 E 1 
HETATM 29 H H141 RNU . . . Q 5 -106.303 59.83 -41.27 0 164.78 ? H141 RNU 1101 E 1 
HETATM 30 H H142 RNU . . . Q 5 -106.4 61.404 -41.42 0 164.78 ? H142 RNU 1101 E 1 
HETATM 31 H H31 RNU . . . Q 5 -115.262 51.99 -45.724 0 164.14 ? H31 RNU 1101 E 1 
HETATM 32 H H51 RNU . . . Q 5 -117.745 54.005 -46.059 0 177.06 ? H51 RNU 1101 E 1 
HETATM 33 H H53 RNU . . . Q 5 -117.347 52.95 -47.161 0 177.06 ? H53 RNU 1101 E 1 
HETATM 34 H H52 RNU . . . Q 5 -117.27 54.492 -47.481 0 177.06 ? H52 RNU 1101 E 1 
HETATM 35 H H61 RNU . . . Q 5 -109.711 55.74 -45.724 0 170.65 ? H61 RNU 1101 E 1 
HETATM 36 H H71 RNU . . . Q 5 -109.692 60.79 -44.97 0 173.88 ? H71 RNU 1101 E 1 
HETATM 37 H H21 RNU . . . Q 5 -111.477 54.321 -46.388 0 175.26 ? H21 RNU 1101 E 1 
#
_model_server_stats.io_time_ms              291 
_model_server_stats.parse_time_ms           67 
_model_server_stats.create_model_time_ms    180 
_model_server_stats.query_time_ms           850 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           37 
#