data_8BUB # _model_server_result.job_id JZ2LMh9vQmF5dmGxcTQylg _model_server_result.datetime_utc '2024-11-06 23:36:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1201}' # _entry.id 8BUB # _exptl.entry_id 8BUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUB _cell.length_a 247.861 _cell.length_b 247.861 _cell.length_c 220.715 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L 1 1 D,E,H,M,N,O,Q 2 1 F,G,I,P,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 D SG CYS 22 D CYS 18 1_555 D SG CYS 317 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 G CYS 18 1_555 F SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 H C TYR 184 E TYR 892 1_555 H N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 H C TPO 185 E TPO 893 1_555 H N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 I C TYR 184 H TYR 892 1_555 I N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 I C TPO 185 H TPO 893 1_555 I N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8BUB _atom_sites.fract_transf_matrix[1][1] 0.004035 _atom_sites.fract_transf_matrix[1][2] 0.002329 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CIT A 1 1201 1201 CIT CIT . K 5 RNU B 1 1101 1101 RNU W08 . L 4 CIT C 1 301 1205 CIT CIT . M 4 CIT D 1 1201 1202 CIT CIT . N 4 CIT F 1 301 301 CIT CIT . O 4 CIT F 1 302 302 CIT CIT . P 4 CIT G 1 1201 1201 CIT CIT . Q 5 RNU E 1 1101 1101 RNU W08 . R 4 CIT H 1 1101 1204 CIT CIT . S 5 RNU H 1 1102 1101 RNU W08 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . M 4 -71.275 67.297 -70.909 1 202.75 ? C1 CIT 1201 D 1 HETATM 2 O O1 CIT . . . M 4 -71.05 68.379 -71.503 1 197.71 ? O1 CIT 1201 D 1 HETATM 3 O O2 CIT . . . M 4 -72.14 67.276 -70 1 206.13 ? O2 CIT 1201 D 1 HETATM 4 C C2 CIT . . . M 4 -70.527 66.035 -71.289 1 195.89 ? C2 CIT 1201 D 1 HETATM 5 C C3 CIT . . . M 4 -69.208 65.973 -70.533 1 211.71 ? C3 CIT 1201 D 1 HETATM 6 O O7 CIT . . . M 4 -69.405 66.447 -69.175 1 179.56 ? O7 CIT 1201 D 1 HETATM 7 C C4 CIT . . . M 4 -68.627 64.562 -70.458 1 179.81 ? C4 CIT 1201 D 1 HETATM 8 C C5 CIT . . . M 4 -69.043 63.705 -71.632 1 181.41 ? C5 CIT 1201 D 1 HETATM 9 O O3 CIT . . . M 4 -68.366 63.719 -72.687 1 189.17 ? O3 CIT 1201 D 1 HETATM 10 O O4 CIT . . . M 4 -70.046 62.96 -71.565 1 174.56 ? O4 CIT 1201 D 1 HETATM 11 C C6 CIT . . . M 4 -68.189 66.891 -71.181 1 211.23 ? C6 CIT 1201 D 1 HETATM 12 O O5 CIT . . . M 4 -68.213 67.115 -72.412 1 225.04 ? O5 CIT 1201 D 1 HETATM 13 O O6 CIT . . . M 4 -67.319 67.451 -70.477 1 182.93 ? O6 CIT 1201 D 1 HETATM 14 H H21 CIT . . . M 4 -71.132 65.161 -71.047 0 235.07 ? H21 CIT 1201 D 1 HETATM 15 H H22 CIT . . . M 4 -70.339 66.026 -72.362 0 235.07 ? H22 CIT 1201 D 1 HETATM 16 H HO7 CIT . . . M 4 -68.895 67.273 -69.039 0 215.47 ? HO7 CIT 1201 D 1 HETATM 17 H H41 CIT . . . M 4 -68.96 64.088 -69.534 0 215.77 ? H41 CIT 1201 D 1 HETATM 18 H H42 CIT . . . M 4 -67.539 64.625 -70.429 0 215.77 ? H42 CIT 1201 D 1 # _model_server_stats.io_time_ms 155 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 232 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #