data_8BUD # _model_server_result.job_id bGdly921vJtDtJnMNooyoQ _model_server_result.datetime_utc '2024-11-26 12:43:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1101}' # _entry.id 8BUD # _exptl.entry_id 8BUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.204 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(5-bromanylpyridin-2-yl)-3-(4-oxidanylidenequinazolin-3-yl)propanamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUD _cell.length_a 249.626 _cell.length_b 249.626 _cell.length_c 218.222 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,T 1 1 D,E,F,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 2 1 G,H,I,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 U N N ? 5 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C16 H13 Br N4 O2' _chem_comp.formula_weight 373.204 _chem_comp.id RP9 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(5-bromanylpyridin-2-yl)-3-(4-oxidanylidenequinazolin-3-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C14 RP9 sing 275 n n C14 C13 RP9 doub 276 n y C14 C15 RP9 sing 277 n y C13 N4 RP9 sing 278 n y C15 C16 RP9 doub 279 n y N4 C12 RP9 doub 280 n y C12 C16 RP9 sing 281 n y C12 N3 RP9 sing 282 n n N3 C11 RP9 sing 283 n n C11 O2 RP9 doub 284 n n C11 C10 RP9 sing 285 n n C10 C9 RP9 sing 286 n n C9 N1 RP9 sing 287 n n N1 C8 RP9 sing 288 n n N1 C7 RP9 sing 289 n n C8 N2 RP9 doub 290 n n O1 C7 RP9 doub 291 n n C7 C1 RP9 sing 292 n n N2 C2 RP9 sing 293 n n C1 C2 RP9 doub 294 n y C1 C6 RP9 sing 295 n y C2 C3 RP9 sing 296 n y C6 C5 RP9 doub 297 n y C3 C4 RP9 doub 298 n y C5 C4 RP9 sing 299 n y C4 H41 RP9 sing 300 n n C5 H51 RP9 sing 301 n n C6 H61 RP9 sing 302 n n C8 H81 RP9 sing 303 n n C3 H31 RP9 sing 304 n n C10 H102 RP9 sing 305 n n C10 H101 RP9 sing 306 n n C13 H131 RP9 sing 307 n n C15 H151 RP9 sing 308 n n C16 H161 RP9 sing 309 n n C9 H91 RP9 sing 310 n n C9 H92 RP9 sing 311 n n N3 H32 RP9 sing 312 n n # _atom_sites.entry_id 8BUD _atom_sites.fract_transf_matrix[1][1] 0.004006 _atom_sites.fract_transf_matrix[1][2] 0.002313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 A 1 1201 3 SO4 SO4 . K 4 SO4 A 1 1202 5 SO4 SO4 . L 4 SO4 A 1 1203 41 SO4 SO4 . M 4 SO4 A 1 1204 74 SO4 SO4 . N 4 SO4 A 1 1205 77 SO4 SO4 . O 5 RP9 B 1 1101 1101 RP9 Z07 . P 4 SO4 B 1 1102 44 SO4 SO4 . Q 4 SO4 B 1 1103 71 SO4 SO4 . R 4 SO4 C 1 301 4 SO4 SO4 . S 4 SO4 C 1 302 30 SO4 SO4 . T 4 SO4 C 1 303 80 SO4 SO4 . U 5 RP9 D 1 1201 1101 RP9 Z07 . V 4 SO4 D 1 1202 2 SO4 SO4 . W 4 SO4 D 1 1203 7 SO4 SO4 . X 4 SO4 D 1 1204 9 SO4 SO4 . Y 4 SO4 D 1 1205 20 SO4 SO4 . Z 4 SO4 D 1 1206 29 SO4 SO4 . AA 4 SO4 D 1 1207 36 SO4 SO4 . BA 4 SO4 D 1 1208 46 SO4 SO4 . CA 4 SO4 D 1 1209 68 SO4 SO4 . DA 4 SO4 D 1 1210 76 SO4 SO4 . EA 4 SO4 D 1 1211 78 SO4 SO4 . FA 4 SO4 E 1 1101 43 SO4 SO4 . GA 4 SO4 F 1 301 21 SO4 SO4 . HA 4 SO4 F 1 302 26 SO4 SO4 . IA 4 SO4 F 1 303 31 SO4 SO4 . JA 4 SO4 F 1 304 73 SO4 SO4 . KA 4 SO4 G 1 1201 1 SO4 SO4 . LA 4 SO4 G 1 1202 8 SO4 SO4 . MA 4 SO4 G 1 1203 13 SO4 SO4 . NA 4 SO4 G 1 1204 14 SO4 SO4 . OA 4 SO4 G 1 1205 15 SO4 SO4 . PA 4 SO4 G 1 1206 28 SO4 SO4 . QA 4 SO4 G 1 1207 54 SO4 SO4 . RA 5 RP9 H 1 1101 1101 RP9 Z07 . SA 4 SO4 H 1 1102 33 SO4 SO4 . TA 4 SO4 H 1 1103 38 SO4 SO4 . UA 4 SO4 H 1 1104 39 SO4 SO4 . VA 4 SO4 H 1 1105 79 SO4 SO4 . WA 4 SO4 I 1 301 12 SO4 SO4 . XA 4 SO4 I 1 302 32 SO4 SO4 . YA 4 SO4 I 1 303 75 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RP9 . . . O 5 -62.918 26.394 2.036 1 130.17 ? C4 RP9 1101 B 1 HETATM 2 C C5 RP9 . . . O 5 -64.272 26.739 1.881 1 122.84 ? C5 RP9 1101 B 1 HETATM 3 C C6 RP9 . . . O 5 -65.061 26.032 1.012 1 122.22 ? C6 RP9 1101 B 1 HETATM 4 C C8 RP9 . . . O 5 -63.295 22.915 -1.095 1 124.99 ? C8 RP9 1101 B 1 HETATM 5 C C1 RP9 . . . O 5 -64.498 24.956 0.275 1 122.97 ? C1 RP9 1101 B 1 HETATM 6 C C11 RP9 . . . O 5 -63.883 22.737 -4.312 1 121.24 ? C11 RP9 1101 B 1 HETATM 7 C C2 RP9 . . . O 5 -63.125 24.609 0.432 1 123.71 ? C2 RP9 1101 B 1 HETATM 8 C C3 RP9 . . . O 5 -62.358 25.36 1.333 1 123.58 ? C3 RP9 1101 B 1 HETATM 9 C C10 RP9 . . . O 5 -64.637 21.803 -3.421 1 125.3 ? C10 RP9 1101 B 1 HETATM 10 C C12 RP9 . . . O 5 -63.649 23.239 -6.76 1 123.89 ? C12 RP9 1101 B 1 HETATM 11 C C13 RP9 . . . O 5 -63.894 23.706 -9.001 1 130.7 ? C13 RP9 1101 B 1 HETATM 12 C C14 RP9 . . . O 5 -62.637 24.234 -9.074 1 130.32 ? C14 RP9 1101 B 1 HETATM 13 C C15 RP9 . . . O 5 -61.838 24.251 -7.964 1 126.12 ? C15 RP9 1101 B 1 HETATM 14 C C16 RP9 . . . O 5 -62.343 23.723 -6.798 1 122.34 ? C16 RP9 1101 B 1 HETATM 15 C C7 RP9 . . . O 5 -65.312 24.191 -0.658 1 122.63 ? C7 RP9 1101 B 1 HETATM 16 C C9 RP9 . . . O 5 -65.437 22.404 -2.29 1 124.06 ? C9 RP9 1101 B 1 HETATM 17 N N1 RP9 . . . O 5 -64.634 23.177 -1.324 1 125.93 ? N1 RP9 1101 B 1 HETATM 18 N N2 RP9 . . . O 5 -62.534 23.557 -0.28 1 125.37 ? N2 RP9 1101 B 1 HETATM 19 N N3 RP9 . . . O 5 -64.23 22.624 -5.627 1 121.78 ? N3 RP9 1101 B 1 HETATM 20 N N4 RP9 . . . O 5 -64.395 23.187 -7.873 1 125.65 ? N4 RP9 1101 B 1 HETATM 21 O O1 RP9 . . . O 5 -66.501 24.396 -0.88 1 122.24 ? O1 RP9 1101 B 1 HETATM 22 O O2 RP9 . . . O 5 -62.966 23.442 -3.913 1 120.1 ? O2 RP9 1101 B 1 HETATM 23 BR BR1 RP9 . . . O 5 -62.02 24.951 -10.71 1 350.05 ? BR1 RP9 1101 B 1 HETATM 24 H H41 RP9 . . . O 5 -62.381 26.885 2.637 0 156.21 ? H41 RP9 1101 B 1 HETATM 25 H H51 RP9 . . . O 5 -64.636 27.457 2.374 0 147.42 ? H51 RP9 1101 B 1 HETATM 26 H H61 RP9 . . . O 5 -65.964 26.258 0.907 0 146.68 ? H61 RP9 1101 B 1 HETATM 27 H H81 RP9 . . . O 5 -62.911 22.212 -1.572 0 149.99 ? H81 RP9 1101 B 1 HETATM 28 H H31 RP9 . . . O 5 -61.447 25.148 1.453 0 148.31 ? H31 RP9 1101 B 1 HETATM 29 H H102 RP9 . . . O 5 -63.986 21.176 -3.032 0 150.37 ? H102 RP9 1101 B 1 HETATM 30 H H101 RP9 . . . O 5 -65.253 21.287 -3.987 0 150.37 ? H101 RP9 1101 B 1 HETATM 31 H H131 RP9 . . . O 5 -64.444 23.702 -9.779 0 156.85 ? H131 RP9 1101 B 1 HETATM 32 H H151 RP9 . . . O 5 -60.97 24.612 -7.998 0 151.35 ? H151 RP9 1101 B 1 HETATM 33 H H161 RP9 . . . O 5 -61.805 23.692 -6.032 0 146.82 ? H161 RP9 1101 B 1 HETATM 34 H H91 RP9 . . . O 5 -65.891 21.682 -1.809 0 148.88 ? H91 RP9 1101 B 1 HETATM 35 H H92 RP9 . . . O 5 -66.121 22.992 -2.668 0 148.88 ? H92 RP9 1101 B 1 HETATM 36 H H32 RP9 . . . O 5 -64.906 22.096 -5.792 0 146.14 ? H32 RP9 1101 B 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #