data_8BUD # _model_server_result.job_id 5GE9aydejm2H2h4C5tvmBQ _model_server_result.datetime_utc '2024-11-26 12:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":1101}' # _entry.id 8BUD # _exptl.entry_id 8BUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.204 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(5-bromanylpyridin-2-yl)-3-(4-oxidanylidenequinazolin-3-yl)propanamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUD _cell.length_a 249.626 _cell.length_b 249.626 _cell.length_c 218.222 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,T 1 1 D,E,F,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 2 1 G,H,I,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 U N N ? 5 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C16 H13 Br N4 O2' _chem_comp.formula_weight 373.204 _chem_comp.id RP9 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(5-bromanylpyridin-2-yl)-3-(4-oxidanylidenequinazolin-3-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C14 RP9 sing 275 n n C14 C13 RP9 doub 276 n y C14 C15 RP9 sing 277 n y C13 N4 RP9 sing 278 n y C15 C16 RP9 doub 279 n y N4 C12 RP9 doub 280 n y C12 C16 RP9 sing 281 n y C12 N3 RP9 sing 282 n n N3 C11 RP9 sing 283 n n C11 O2 RP9 doub 284 n n C11 C10 RP9 sing 285 n n C10 C9 RP9 sing 286 n n C9 N1 RP9 sing 287 n n N1 C8 RP9 sing 288 n n N1 C7 RP9 sing 289 n n C8 N2 RP9 doub 290 n n O1 C7 RP9 doub 291 n n C7 C1 RP9 sing 292 n n N2 C2 RP9 sing 293 n n C1 C2 RP9 doub 294 n y C1 C6 RP9 sing 295 n y C2 C3 RP9 sing 296 n y C6 C5 RP9 doub 297 n y C3 C4 RP9 doub 298 n y C5 C4 RP9 sing 299 n y C4 H41 RP9 sing 300 n n C5 H51 RP9 sing 301 n n C6 H61 RP9 sing 302 n n C8 H81 RP9 sing 303 n n C3 H31 RP9 sing 304 n n C10 H102 RP9 sing 305 n n C10 H101 RP9 sing 306 n n C13 H131 RP9 sing 307 n n C15 H151 RP9 sing 308 n n C16 H161 RP9 sing 309 n n C9 H91 RP9 sing 310 n n C9 H92 RP9 sing 311 n n N3 H32 RP9 sing 312 n n # _atom_sites.entry_id 8BUD _atom_sites.fract_transf_matrix[1][1] 0.004006 _atom_sites.fract_transf_matrix[1][2] 0.002313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 A 1 1201 3 SO4 SO4 . K 4 SO4 A 1 1202 5 SO4 SO4 . L 4 SO4 A 1 1203 41 SO4 SO4 . M 4 SO4 A 1 1204 74 SO4 SO4 . N 4 SO4 A 1 1205 77 SO4 SO4 . O 5 RP9 B 1 1101 1101 RP9 Z07 . P 4 SO4 B 1 1102 44 SO4 SO4 . Q 4 SO4 B 1 1103 71 SO4 SO4 . R 4 SO4 C 1 301 4 SO4 SO4 . S 4 SO4 C 1 302 30 SO4 SO4 . T 4 SO4 C 1 303 80 SO4 SO4 . U 5 RP9 D 1 1201 1101 RP9 Z07 . V 4 SO4 D 1 1202 2 SO4 SO4 . W 4 SO4 D 1 1203 7 SO4 SO4 . X 4 SO4 D 1 1204 9 SO4 SO4 . Y 4 SO4 D 1 1205 20 SO4 SO4 . Z 4 SO4 D 1 1206 29 SO4 SO4 . AA 4 SO4 D 1 1207 36 SO4 SO4 . BA 4 SO4 D 1 1208 46 SO4 SO4 . CA 4 SO4 D 1 1209 68 SO4 SO4 . DA 4 SO4 D 1 1210 76 SO4 SO4 . EA 4 SO4 D 1 1211 78 SO4 SO4 . FA 4 SO4 E 1 1101 43 SO4 SO4 . GA 4 SO4 F 1 301 21 SO4 SO4 . HA 4 SO4 F 1 302 26 SO4 SO4 . IA 4 SO4 F 1 303 31 SO4 SO4 . JA 4 SO4 F 1 304 73 SO4 SO4 . KA 4 SO4 G 1 1201 1 SO4 SO4 . LA 4 SO4 G 1 1202 8 SO4 SO4 . MA 4 SO4 G 1 1203 13 SO4 SO4 . NA 4 SO4 G 1 1204 14 SO4 SO4 . OA 4 SO4 G 1 1205 15 SO4 SO4 . PA 4 SO4 G 1 1206 28 SO4 SO4 . QA 4 SO4 G 1 1207 54 SO4 SO4 . RA 5 RP9 H 1 1101 1101 RP9 Z07 . SA 4 SO4 H 1 1102 33 SO4 SO4 . TA 4 SO4 H 1 1103 38 SO4 SO4 . UA 4 SO4 H 1 1104 39 SO4 SO4 . VA 4 SO4 H 1 1105 79 SO4 SO4 . WA 4 SO4 I 1 301 12 SO4 SO4 . XA 4 SO4 I 1 302 32 SO4 SO4 . YA 4 SO4 I 1 303 75 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RP9 . . . RA 5 -135.062 18.996 12.1 1 126.92 ? C4 RP9 1101 H 1 HETATM 2 C C5 RP9 . . . RA 5 -134.043 19.671 11.405 1 121.31 ? C5 RP9 1101 H 1 HETATM 3 C C6 RP9 . . . RA 5 -133.443 19.074 10.326 1 121.54 ? C6 RP9 1101 H 1 HETATM 4 C C8 RP9 . . . RA 5 -134.755 15.269 9.259 1 122.22 ? C8 RP9 1101 H 1 HETATM 5 C C1 RP9 . . . RA 5 -133.863 17.776 9.925 1 122.6 ? C1 RP9 1101 H 1 HETATM 6 C C11 RP9 . . . RA 5 -132.437 12.989 8.591 1 115.91 ? C11 RP9 1101 H 1 HETATM 7 C C2 RP9 . . . RA 5 -134.895 17.095 10.634 1 122.82 ? C2 RP9 1101 H 1 HETATM 8 C C3 RP9 . . . RA 5 -135.477 17.745 11.731 1 122.81 ? C3 RP9 1101 H 1 HETATM 9 C C10 RP9 . . . RA 5 -133.136 13.653 7.441 1 117.2 ? C10 RP9 1101 H 1 HETATM 10 C C12 RP9 . . . RA 5 -130.596 11.299 8.928 1 116.46 ? C12 RP9 1101 H 1 HETATM 11 C C13 RP9 . . . RA 5 -128.701 9.995 8.874 1 122.74 ? C13 RP9 1101 H 1 HETATM 12 C C14 RP9 . . . RA 5 -128.981 9.46 10.101 1 121.97 ? C14 RP9 1101 H 1 HETATM 13 C C15 RP9 . . . RA 5 -130.137 9.815 10.751 1 122.04 ? C15 RP9 1101 H 1 HETATM 14 C C16 RP9 . . . RA 5 -130.97 10.727 10.141 1 118.89 ? C16 RP9 1101 H 1 HETATM 15 C C7 RP9 . . . RA 5 -133.244 17.114 8.787 1 121.74 ? C7 RP9 1101 H 1 HETATM 16 C C9 RP9 . . . RA 5 -133.117 15.161 7.368 1 117.69 ? C9 RP9 1101 H 1 HETATM 17 N N1 RP9 . . . RA 5 -133.742 15.847 8.512 1 121.22 ? N1 RP9 1101 H 1 HETATM 18 N N2 RP9 . . . RA 5 -135.335 15.814 10.272 1 122.47 ? N2 RP9 1101 H 1 HETATM 19 N N3 RP9 . . . RA 5 -131.408 12.187 8.185 1 114.4 ? N3 RP9 1101 H 1 HETATM 20 N N4 RP9 . . . RA 5 -129.501 10.885 8.276 1 117.17 ? N4 RP9 1101 H 1 HETATM 21 O O1 RP9 . . . RA 5 -132.35 17.598 8.101 1 121.37 ? O1 RP9 1101 H 1 HETATM 22 O O2 RP9 . . . RA 5 -132.819 13.084 9.751 1 117.16 ? O2 RP9 1101 H 1 HETATM 23 BR BR1 RP9 . . . RA 5 -127.776 8.226 10.868 1 351.33 ? BR1 RP9 1101 H 1 HETATM 24 H H41 RP9 . . . RA 5 -135.471 19.415 12.84 0 152.32 ? H41 RP9 1101 H 1 HETATM 25 H H51 RP9 . . . RA 5 -133.773 20.532 11.681 0 145.59 ? H51 RP9 1101 H 1 HETATM 26 H H61 RP9 . . . RA 5 -132.764 19.519 9.859 0 145.85 ? H61 RP9 1101 H 1 HETATM 27 H H81 RP9 . . . RA 5 -135.041 14.418 9.008 0 146.67 ? H81 RP9 1101 H 1 HETATM 28 H H31 RP9 . . . RA 5 -136.161 17.313 12.216 0 147.38 ? H31 RP9 1101 H 1 HETATM 29 H H102 RP9 . . . RA 5 -134.076 13.365 7.463 0 140.65 ? H102 RP9 1101 H 1 HETATM 30 H H101 RP9 . . . RA 5 -132.734 13.307 6.614 0 140.65 ? H101 RP9 1101 H 1 HETATM 31 H H131 RP9 . . . RA 5 -127.906 9.729 8.419 0 147.3 ? H131 RP9 1101 H 1 HETATM 32 H H151 RP9 . . . RA 5 -130.353 9.446 11.589 0 146.46 ? H151 RP9 1101 H 1 HETATM 33 H H161 RP9 . . . RA 5 -131.784 10.958 10.544 0 142.68 ? H161 RP9 1101 H 1 HETATM 34 H H91 RP9 . . . RA 5 -133.58 15.439 6.552 0 141.24 ? H91 RP9 1101 H 1 HETATM 35 H H92 RP9 . . . RA 5 -132.186 15.457 7.303 0 141.24 ? H92 RP9 1101 H 1 HETATM 36 H H32 RP9 . . . RA 5 -131.222 12.231 7.332 0 137.28 ? H32 RP9 1101 H 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 116 _model_server_stats.create_model_time_ms 266 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #