data_8BUH
#
_model_server_result.job_id            GHUQns_ZLbJPpL8WJcpasw 
_model_server_result.datetime_utc      '2024-11-26 12:51:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8buh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":1101}' 
#
_entry.id    8BUH 
#
_exptl.entry_id    8BUH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              448.521 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[[[2-[[(2~{R})-1-oxidanylbutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]-3-pyridin-2-yl-1~{H}-pyridin-2-one 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUH 
_cell.length_a            249.143 
_cell.length_b            249.143 
_cell.length_c            217.39 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S 2 1 
G,H,I,T,U,V,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 R N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C23 H28 N8 O2' 
_chem_comp.formula_weight    448.521 
_chem_comp.id                RR9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[[[2-[[(2~{R})-1-oxidanylbutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]-3-pyridin-2-yl-1~{H}-pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RR9 sing 275 n n 
C3 C2 RR9 sing 276 n n 
C2 N1 RR9 sing 277 n n 
C4 N1 RR9 sing 278 n y 
C4 N2 RR9 doub 279 n y 
N1 C5 RR9 sing 280 n y 
N2 C6 RR9 sing 281 n y 
C5 N8 RR9 doub 282 n y 
C5 C6 RR9 sing 283 n y 
N8 C19 RR9 sing 284 n y 
C6 C7 RR9 doub 285 n y 
C19 N7 RR9 sing 286 n n 
C19 N6 RR9 doub 287 n y 
C7 N6 RR9 sing 288 n y 
C7 N3 RR9 sing 289 n n 
N7 C20 RR9 sing 290 n n 
C23 C22 RR9 sing 291 n n 
N3 C8 RR9 sing 292 n n 
C22 C20 RR9 sing 293 n n 
C20 C21 RR9 sing 294 n n 
C8 C9 RR9 sing 295 n n 
O2 C21 RR9 sing 296 n n 
C9 N4 RR9 sing 297 n n 
C9 C10 RR9 doub 298 n n 
N4 C18 RR9 sing 299 n n 
C10 C11 RR9 sing 300 n n 
C18 O1 RR9 doub 301 n n 
C18 C12 RR9 sing 302 n n 
C11 C12 RR9 doub 303 n n 
C12 C13 RR9 sing 304 n n 
N5 C13 RR9 doub 305 n y 
N5 C17 RR9 sing 306 n y 
C13 C14 RR9 sing 307 n y 
C17 C16 RR9 doub 308 n y 
C14 C15 RR9 doub 309 n y 
C16 C15 RR9 sing 310 n y 
C1 H2 RR9 sing 311 n n 
C1 H3 RR9 sing 312 n n 
C1 H1 RR9 sing 313 n n 
C2 H4 RR9 sing 314 n n 
O2 H23 RR9 sing 315 n n 
C3 H6 RR9 sing 316 n n 
C3 H7 RR9 sing 317 n n 
C3 H5 RR9 sing 318 n n 
C4 H8 RR9 sing 319 n n 
C10 H13 RR9 sing 320 n n 
C11 H14 RR9 sing 321 n n 
C14 H15 RR9 sing 322 n n 
C15 H16 RR9 sing 323 n n 
C16 H17 RR9 sing 324 n n 
C17 H18 RR9 sing 325 n n 
C21 H21 RR9 sing 326 n n 
C21 H22 RR9 sing 327 n n 
C22 H25 RR9 sing 328 n n 
C22 H24 RR9 sing 329 n n 
C23 H27 RR9 sing 330 n n 
C23 H28 RR9 sing 331 n n 
C23 H26 RR9 sing 332 n n 
C20 H20 RR9 sing 333 n n 
C8 H10 RR9 sing 334 n n 
C8 H11 RR9 sing 335 n n 
N3 H9 RR9 sing 336 n n 
N4 H12 RR9 sing 337 n n 
N7 H19 RR9 sing 338 n n 
#
_atom_sites.entry_id                     8BUH 
_atom_sites.fract_transf_matrix[1][1]    0.004014 
_atom_sites.fract_transf_matrix[1][2]    0.002317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 1 SO4 SO4 . 
K 4 SO4 A 1 1202 9 SO4 SO4 . 
L 4 SO4 A 1 1203 11 SO4 SO4 . 
M 4 SO4 A 1 1204 12 SO4 SO4 . 
N 5 RR9 B 1 1101 1101 RR9 WX3 . 
O 4 SO4 C 1 301 7 SO4 SO4 . 
P 4 SO4 D 1 1201 3 SO4 SO4 . 
Q 4 SO4 D 1 1202 6 SO4 SO4 . 
R 5 RR9 E 1 1101 1101 RR9 WX3 . 
S 4 SO4 F 1 301 2 SO4 SO4 . 
T 4 SO4 G 1 1201 5 SO4 SO4 . 
U 4 SO4 G 1 1202 8 SO4 SO4 . 
V 4 SO4 G 1 1203 10 SO4 SO4 . 
W 5 RR9 H 1 1101 1101 RR9 WX3 . 
X 4 SO4 I 1 301 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RR9 . . . W 5 -127.851 7.044 11.037 1 116.54 ? C1 RR9 1101 H 1 
HETATM 2 N N1 RR9 . . . W 5 -128.735 9.317 10.706 1 103.71 ? N1 RR9 1101 H 1 
HETATM 3 O O1 RR9 . . . W 5 -132.232 17.327 6.901 1 139.89 ? O1 RR9 1101 H 1 
HETATM 4 C C2 RR9 . . . W 5 -128.205 8.357 11.699 1 119.27 ? C2 RR9 1101 H 1 
HETATM 5 N N2 RR9 . . . W 5 -128.824 10.725 8.95 1 111.91 ? N2 RR9 1101 H 1 
HETATM 6 O O2 RR9 . . . W 5 -135.058 8.692 13.87 1 150.46 ? O2 RR9 1101 H 1 
HETATM 7 C C3 RR9 . . . W 5 -127.054 8.983 12.462 1 122.96 ? C3 RR9 1101 H 1 
HETATM 8 C C4 RR9 . . . W 5 -128.082 9.9 9.654 1 103.47 ? C4 RR9 1101 H 1 
HETATM 9 C C5 RR9 . . . W 5 -130.007 9.827 10.675 1 112.39 ? C5 RR9 1101 H 1 
HETATM 10 C C7 RR9 . . . W 5 -131.291 11.317 9.362 1 122.09 ? C7 RR9 1101 H 1 
HETATM 11 C C9 RR9 . . . W 5 -132.843 14.213 8.41 1 131.46 ? C9 RR9 1101 H 1 
HETATM 12 C C10 RR9 . . . W 5 -133.253 14.566 9.65 1 139.57 ? C10 RR9 1101 H 1 
HETATM 13 C C11 RR9 . . . W 5 -133.338 15.918 10.012 1 135.95 ? C11 RR9 1101 H 1 
HETATM 14 C C12 RR9 . . . W 5 -132.986 16.917 9.115 1 137.51 ? C12 RR9 1101 H 1 
HETATM 15 C C14 RR9 . . . W 5 -134.017 18.802 10.437 1 133.75 ? C14 RR9 1101 H 1 
HETATM 16 C C15 RR9 . . . W 5 -134.051 20.141 10.769 1 141.92 ? C15 RR9 1101 H 1 
HETATM 17 C C16 RR9 . . . W 5 -133.149 20.999 10.191 1 144.77 ? C16 RR9 1101 H 1 
HETATM 18 C C17 RR9 . . . W 5 -132.239 20.479 9.299 1 139.72 ? C17 RR9 1101 H 1 
HETATM 19 C C18 RR9 . . . W 5 -132.558 16.532 7.785 1 138.69 ? C18 RR9 1101 H 1 
HETATM 20 C C21 RR9 . . . W 5 -134.727 10.072 13.97 1 146.61 ? C21 RR9 1101 H 1 
HETATM 21 C C22 RR9 . . . W 5 -132.291 9.623 14.25 1 109.82 ? C22 RR9 1101 H 1 
HETATM 22 C C23 RR9 . . . W 5 -131.038 10.393 14.543 1 110.99 ? C23 RR9 1101 H 1 
HETATM 23 C C13 RR9 . . . W 5 -133.085 18.348 9.51 1 139.13 ? C13 RR9 1101 H 1 
HETATM 24 C C19 RR9 . . . W 5 -132.148 10.192 11.233 1 127.02 ? C19 RR9 1101 H 1 
HETATM 25 C C20 RR9 . . . W 5 -133.338 10.353 13.396 1 128.16 ? C20 RR9 1101 H 1 
HETATM 26 C C6 RR9 . . . W 5 -130.054 10.684 9.592 1 115.03 ? C6 RR9 1101 H 1 
HETATM 27 C C8 RR9 . . . W 5 -132.749 12.758 8.013 1 129.8 ? C8 RR9 1101 H 1 
HETATM 28 N N3 RR9 . . . W 5 -131.466 12.18 8.346 1 120.25 ? N3 RR9 1101 H 1 
HETATM 29 N N4 RR9 . . . W 5 -132.504 15.183 7.509 1 131.54 ? N4 RR9 1101 H 1 
HETATM 30 N N5 RR9 . . . W 5 -132.186 19.182 8.957 1 145.08 ? N5 RR9 1101 H 1 
HETATM 31 N N6 RR9 . . . W 5 -132.32 11.046 10.196 1 131.78 ? N6 RR9 1101 H 1 
HETATM 32 N N7 RR9 . . . W 5 -133.208 9.91 12.012 1 129.75 ? N7 RR9 1101 H 1 
HETATM 33 N N8 RR9 . . . W 5 -131.007 9.537 11.516 1 116.79 ? N8 RR9 1101 H 1 
HETATM 34 H H2 RR9 . . . W 5 -127.583 6.4 11.715 0 140.23 ? H2 RR9 1101 H 1 
HETATM 35 H H3 RR9 . . . W 5 -127.116 7.184 10.414 0 140.23 ? H3 RR9 1101 H 1 
HETATM 36 H H1 RR9 . . . W 5 -128.625 6.705 10.555 0 140.23 ? H1 RR9 1101 H 1 
HETATM 37 H H4 RR9 . . . W 5 -128.926 8.16 12.355 0 143.52 ? H4 RR9 1101 H 1 
HETATM 38 H H23 RR9 . . . W 5 -135.032 8.467 13.055 0 180.94 ? H23 RR9 1101 H 1 
HETATM 39 H H6 RR9 . . . W 5 -126.343 9.219 11.841 0 147.95 ? H6 RR9 1101 H 1 
HETATM 40 H H7 RR9 . . . W 5 -126.715 8.347 13.116 0 147.95 ? H7 RR9 1101 H 1 
HETATM 41 H H5 RR9 . . . W 5 -127.365 9.783 12.919 0 147.95 ? H5 RR9 1101 H 1 
HETATM 42 H H8 RR9 . . . W 5 -127.173 9.723 9.452 0 124.55 ? H8 RR9 1101 H 1 
HETATM 43 H H13 RR9 . . . W 5 -133.484 13.899 10.276 0 167.87 ? H13 RR9 1101 H 1 
HETATM 44 H H14 RR9 . . . W 5 -133.637 16.155 10.875 0 163.54 ? H14 RR9 1101 H 1 
HETATM 45 H H15 RR9 . . . W 5 -134.624 18.193 10.836 0 160.89 ? H15 RR9 1101 H 1 
HETATM 46 H H16 RR9 . . . W 5 -134.689 20.462 11.387 0 170.7 ? H16 RR9 1101 H 1 
HETATM 47 H H17 RR9 . . . W 5 -133.152 21.92 10.398 0 174.12 ? H17 RR9 1101 H 1 
HETATM 48 H H18 RR9 . . . W 5 -131.613 21.065 8.902 0 168.05 ? H18 RR9 1101 H 1 
HETATM 49 H H21 RR9 . . . W 5 -135.39 10.605 13.481 0 176.33 ? H21 RR9 1101 H 1 
HETATM 50 H H22 RR9 . . . W 5 -134.748 10.349 14.911 0 176.33 ? H22 RR9 1101 H 1 
HETATM 51 H H25 RR9 . . . W 5 -132.709 9.376 15.103 0 132.17 ? H25 RR9 1101 H 1 
HETATM 52 H H24 RR9 . . . W 5 -132.043 8.794 13.788 0 132.17 ? H24 RR9 1101 H 1 
HETATM 53 H H27 RR9 . . . W 5 -131.26 11.192 15.053 0 133.59 ? H27 RR9 1101 H 1 
HETATM 54 H H28 RR9 . . . W 5 -130.612 10.651 13.707 0 133.59 ? H28 RR9 1101 H 1 
HETATM 55 H H26 RR9 . . . W 5 -130.429 9.838 15.06 0 133.59 ? H26 RR9 1101 H 1 
HETATM 56 H H20 RR9 . . . W 5 -133.192 11.342 13.378 0 154.18 ? H20 RR9 1101 H 1 
HETATM 57 H H10 RR9 . . . W 5 -133.455 12.253 8.466 0 156.15 ? H10 RR9 1101 H 1 
HETATM 58 H H11 RR9 . . . W 5 -132.897 12.675 7.049 0 156.15 ? H11 RR9 1101 H 1 
HETATM 59 H H9 RR9 . . . W 5 -130.767 12.405 7.859 0 144.69 ? H9 RR9 1101 H 1 
HETATM 60 H H12 RR9 . . . W 5 -132.238 14.942 6.71 0 158.24 ? H12 RR9 1101 H 1 
HETATM 61 H H19 RR9 . . . W 5 -133.863 9.431 11.67 0 156.1 ? H19 RR9 1101 H 1 
#
_model_server_stats.io_time_ms              130 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    81 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           61 
#