data_8BUI
#
_model_server_result.job_id            0JjpYxFT1gaEC-yPSgxXzA 
_model_server_result.datetime_utc      '2024-11-29 22:52:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bui 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":1101}' 
#
_entry.id    8BUI 
#
_exptl.entry_id    8BUI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.507 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[9-propan-2-yl-6-[(4-pyridin-2-ylphenyl)amino]purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUI 
_cell.length_a            249.436 
_cell.length_b            249.436 
_cell.length_c            218.342 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q,R 1 1 
D,E,F,S,T,U,V,W,X,Y,Z 2 1 
G,H,I,AA,BA,CA,DA,EA,FA,GA,HA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 W N N 
? 6 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C23 H27 N7 O' 
_chem_comp.formula_weight    417.507 
_chem_comp.id                RV6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[9-propan-2-yl-6-[(4-pyridin-2-ylphenyl)amino]purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 RV6 sing 284 n n 
C7 C9 RV6 sing 285 n n 
C7 N5 RV6 sing 286 n n 
N5 C6 RV6 sing 287 n y 
N5 C4 RV6 sing 288 n y 
C6 N4 RV6 doub 289 n y 
C13 C12 RV6 sing 290 n n 
C4 N3 RV6 doub 291 n y 
C4 C5 RV6 sing 292 n y 
N3 C3 RV6 sing 293 n y 
N4 C5 RV6 sing 294 n y 
C12 C10 RV6 sing 295 n n 
C5 C2 RV6 doub 296 n y 
C3 N6 RV6 sing 297 n n 
C3 N2 RV6 doub 298 n y 
N6 C10 RV6 sing 299 n n 
C10 C11 RV6 sing 300 n n 
C2 N2 RV6 sing 301 n y 
C2 N1 RV6 sing 302 n n 
C11 O1 RV6 sing 303 n n 
N1 C1 RV6 sing 304 n n 
C14 C1 RV6 doub 305 n y 
C14 C15 RV6 sing 306 n y 
C1 C18 RV6 sing 307 n y 
C15 C16 RV6 doub 308 n y 
C18 C17 RV6 doub 309 n y 
C16 C17 RV6 sing 310 n y 
C16 C19 RV6 sing 311 n n 
N7 C19 RV6 doub 312 n y 
N7 C23 RV6 sing 313 n y 
C19 C20 RV6 sing 314 n y 
C23 C22 RV6 doub 315 n y 
C20 C21 RV6 doub 316 n y 
C22 C21 RV6 sing 317 n y 
C23 H231 RV6 sing 318 n n 
C11 H112 RV6 sing 319 n n 
C11 H111 RV6 sing 320 n n 
C6 H61 RV6 sing 321 n n 
C15 H151 RV6 sing 322 n n 
C14 H141 RV6 sing 323 n n 
C13 H132 RV6 sing 324 n n 
C13 H133 RV6 sing 325 n n 
C13 H131 RV6 sing 326 n n 
C12 H121 RV6 sing 327 n n 
C12 H122 RV6 sing 328 n n 
C10 H101 RV6 sing 329 n n 
C17 H171 RV6 sing 330 n n 
C18 H181 RV6 sing 331 n n 
C20 H201 RV6 sing 332 n n 
C21 H211 RV6 sing 333 n n 
C22 H221 RV6 sing 334 n n 
C7 H71 RV6 sing 335 n n 
C8 H83 RV6 sing 336 n n 
C8 H82 RV6 sing 337 n n 
C8 H81 RV6 sing 338 n n 
C9 H92 RV6 sing 339 n n 
C9 H91 RV6 sing 340 n n 
C9 H93 RV6 sing 341 n n 
N1 H12 RV6 sing 342 n n 
N6 H62 RV6 sing 343 n n 
O1 H11 RV6 sing 344 n n 
#
_atom_sites.entry_id                     8BUI 
_atom_sites.fract_transf_matrix[1][1]    0.004009 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 EDO A 1 1201 1201 EDO EDO . 
K 5 SO4 A 1 1202 3 SO4 SO4 . 
L 5 SO4 A 1 1203 5 SO4 SO4 . 
M 5 SO4 A 1 1204 27 SO4 SO4 . 
N 6 RV6 B 1 1101 1101 RV6 DRF . 
O 5 SO4 B 1 1102 34 SO4 SO4 . 
P 5 SO4 C 1 301 4 SO4 SO4 . 
Q 5 SO4 C 1 302 16 SO4 SO4 . 
R 5 SO4 C 1 303 30 SO4 SO4 . 
S 5 SO4 D 1 1201 2 SO4 SO4 . 
T 5 SO4 D 1 1202 7 SO4 SO4 . 
U 5 SO4 D 1 1203 29 SO4 SO4 . 
V 5 SO4 D 1 1204 35 SO4 SO4 . 
W 6 RV6 E 1 1101 1101 RV6 DRF . 
X 5 SO4 F 1 301 17 SO4 SO4 . 
Y 5 SO4 F 1 302 26 SO4 SO4 . 
Z 5 SO4 F 1 303 31 SO4 SO4 . 
AA 5 SO4 G 1 1201 1 SO4 SO4 . 
BA 5 SO4 G 1 1202 8 SO4 SO4 . 
CA 5 SO4 G 1 1203 14 SO4 SO4 . 
DA 6 RV6 H 1 1101 1101 RV6 DRF . 
EA 5 SO4 H 1 1102 33 SO4 SO4 . 
FA 5 SO4 I 1 301 12 SO4 SO4 . 
GA 5 SO4 I 1 302 18 SO4 SO4 . 
HA 5 SO4 I 1 303 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 RV6 . . . W 6 -106.711 59.015 -42.383 1 179.34 ? C23 RV6 1101 E 1 
HETATM 2 C C11 RV6 . . . W 6 -115.629 58.91 -50.6 1 144.76 ? C11 RV6 1101 E 1 
HETATM 3 C C16 RV6 . . . W 6 -109.395 58.59 -44.808 1 179.38 ? C16 RV6 1101 E 1 
HETATM 4 C C4 RV6 . . . W 6 -115.428 55.487 -47.141 1 125.35 ? C4 RV6 1101 E 1 
HETATM 5 C C3 RV6 . . . W 6 -115.477 57.62 -47.838 1 144.99 ? C3 RV6 1101 E 1 
HETATM 6 C C2 RV6 . . . W 6 -113.374 56.63 -47.503 1 146.57 ? C2 RV6 1101 E 1 
HETATM 7 C C1 RV6 . . . W 6 -111.137 57.336 -46.605 1 137.82 ? C1 RV6 1101 E 1 
HETATM 8 C C6 RV6 . . . W 6 -114.7 53.538 -46.492 1 129.69 ? C6 RV6 1101 E 1 
HETATM 9 C C5 RV6 . . . W 6 -114.045 55.451 -47.124 1 128.91 ? C5 RV6 1101 E 1 
HETATM 10 C C15 RV6 . . . W 6 -109.709 57.241 -44.685 1 197.13 ? C15 RV6 1101 E 1 
HETATM 11 C C14 RV6 . . . W 6 -110.565 56.614 -45.564 1 159.39 ? C14 RV6 1101 E 1 
HETATM 12 C C13 RV6 . . . W 6 -118.051 60.612 -49.21 1 145.19 ? C13 RV6 1101 E 1 
HETATM 13 C C12 RV6 . . . W 6 -116.568 60.884 -49.259 1 153.55 ? C12 RV6 1101 E 1 
HETATM 14 C C10 RV6 . . . W 6 -115.694 59.625 -49.248 1 138.76 ? C10 RV6 1101 E 1 
HETATM 15 C C17 RV6 . . . W 6 -109.964 59.299 -45.86 1 156.13 ? C17 RV6 1101 E 1 
HETATM 16 C C18 RV6 . . . W 6 -110.819 58.684 -46.751 1 165.81 ? C18 RV6 1101 E 1 
HETATM 17 C C19 RV6 . . . W 6 -108.487 59.241 -43.828 1 167.92 ? C19 RV6 1101 E 1 
HETATM 18 C C20 RV6 . . . W 6 -108.599 60.584 -43.49 1 142.21 ? C20 RV6 1101 E 1 
HETATM 19 C C21 RV6 . . . W 6 -107.74 61.131 -42.56 1 199.17 ? C21 RV6 1101 E 1 
HETATM 20 C C22 RV6 . . . W 6 -106.781 60.332 -41.995 1 204.14 ? C22 RV6 1101 E 1 
HETATM 21 C C7 RV6 . . . W 6 -117.246 53.791 -46.589 1 110.24 ? C7 RV6 1101 E 1 
HETATM 22 C C8 RV6 . . . W 6 -117.85 53.552 -47.966 1 142.27 ? C8 RV6 1101 E 1 
HETATM 23 C C9 RV6 . . . W 6 -118.052 54.744 -45.741 1 121.95 ? C9 RV6 1101 E 1 
HETATM 24 N N1 RV6 . . . W 6 -112.009 56.658 -47.49 1 152.57 ? N1 RV6 1101 E 1 
HETATM 25 N N2 RV6 . . . W 6 -114.124 57.698 -47.86 1 134.95 ? N2 RV6 1101 E 1 
HETATM 26 N N3 RV6 . . . W 6 -116.191 56.533 -47.489 1 127.81 ? N3 RV6 1101 E 1 
HETATM 27 N N4 RV6 . . . W 6 -113.591 54.209 -46.701 1 128.49 ? N4 RV6 1101 E 1 
HETATM 28 N N5 RV6 . . . W 6 -115.846 54.25 -46.719 1 110.18 ? N5 RV6 1101 E 1 
HETATM 29 N N6 RV6 . . . W 6 -116.168 58.707 -48.208 1 149.91 ? N6 RV6 1101 E 1 
HETATM 30 N N7 RV6 . . . W 6 -107.539 58.458 -43.278 1 172.81 ? N7 RV6 1101 E 1 
HETATM 31 O O1 RV6 . . . W 6 -116.799 58.111 -50.839 1 161.13 ? O1 RV6 1101 E 1 
HETATM 32 H H231 RV6 . . . W 6 -106.044 58.467 -41.999 0 215.38 ? H231 RV6 1101 E 1 
HETATM 33 H H112 RV6 . . . W 6 -114.833 58.337 -50.62 0 173.89 ? H112 RV6 1101 E 1 
HETATM 34 H H111 RV6 . . . W 6 -115.54 59.579 -51.311 0 173.89 ? H111 RV6 1101 E 1 
HETATM 35 H H61 RV6 . . . W 6 -114.708 52.634 -46.208 0 155.8 ? H61 RV6 1101 E 1 
HETATM 36 H H151 RV6 . . . W 6 -109.327 56.74 -43.983 0 236.73 ? H151 RV6 1101 E 1 
HETATM 37 H H141 RV6 . . . W 6 -110.762 55.699 -45.462 0 191.45 ? H141 RV6 1101 E 1 
HETATM 38 H H132 RV6 . . . W 6 -118.291 60.273 -48.33 0 174.41 ? H132 RV6 1101 E 1 
HETATM 39 H H133 RV6 . . . W 6 -118.539 61.436 -49.384 0 174.41 ? H133 RV6 1101 E 1 
HETATM 40 H H131 RV6 . . . W 6 -118.283 59.951 -49.885 0 174.41 ? H131 RV6 1101 E 1 
HETATM 41 H H121 RV6 . . . W 6 -116.369 61.397 -50.071 0 184.43 ? H121 RV6 1101 E 1 
HETATM 42 H H122 RV6 . . . W 6 -116.325 61.44 -48.488 0 184.43 ? H122 RV6 1101 E 1 
HETATM 43 H H101 RV6 . . . W 6 -114.76 59.901 -49.021 0 166.69 ? H101 RV6 1101 E 1 
HETATM 44 H H171 RV6 . . . W 6 -109.764 60.215 -45.968 0 187.53 ? H171 RV6 1101 E 1 
HETATM 45 H H181 RV6 . . . W 6 -111.191 59.177 -47.463 0 199.15 ? H181 RV6 1101 E 1 
HETATM 46 H H201 RV6 . . . W 6 -109.264 61.12 -43.9 0 170.83 ? H201 RV6 1101 E 1 
HETATM 47 H H211 RV6 . . . W 6 -107.813 62.04 -42.319 0 239.19 ? H211 RV6 1101 E 1 
HETATM 48 H H221 RV6 . . . W 6 -106.181 60.678 -41.353 0 245.15 ? H221 RV6 1101 E 1 
HETATM 49 H H71 RV6 . . . W 6 -117.233 52.92 -46.11 0 132.47 ? H71 RV6 1101 E 1 
HETATM 50 H H83 RV6 . . . W 6 -117.922 54.399 -48.44 0 170.9 ? H83 RV6 1101 E 1 
HETATM 51 H H82 RV6 . . . W 6 -118.735 53.159 -47.867 0 170.9 ? H82 RV6 1101 E 1 
HETATM 52 H H81 RV6 . . . W 6 -117.28 52.945 -48.469 0 170.9 ? H81 RV6 1101 E 1 
HETATM 53 H H92 RV6 . . . W 6 -118.162 55.586 -46.214 0 146.51 ? H92 RV6 1101 E 1 
HETATM 54 H H91 RV6 . . . W 6 -117.587 54.902 -44.901 0 146.51 ? H91 RV6 1101 E 1 
HETATM 55 H H93 RV6 . . . W 6 -118.926 54.357 -45.56 0 146.51 ? H93 RV6 1101 E 1 
HETATM 56 H H12 RV6 . . . W 6 -111.612 56.191 -48.12 0 183.27 ? H12 RV6 1101 E 1 
HETATM 57 H H62 RV6 . . . W 6 -116.936 58.879 -47.815 0 180.07 ? H62 RV6 1101 E 1 
HETATM 58 H H11 RV6 . . . W 6 -116.689 57.682 -51.56 0 193.53 ? H11 RV6 1101 E 1 
#
_model_server_stats.io_time_ms              139 
_model_server_stats.parse_time_ms           45 
_model_server_stats.create_model_time_ms    403 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           58 
#