data_8BUJ
#
_model_server_result.job_id            HpUpVGrJcmhYU1na-UXa5g 
_model_server_result.datetime_utc      '2024-11-29 15:50:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8buj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    8BUJ 
#
_exptl.entry_id    8BUJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.539 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-(octylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUJ 
_cell.length_a            249.353 
_cell.length_b            249.353 
_cell.length_c            218.417 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T 2 1 
G,H,I,U,V,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 S N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C20 H36 N6 O' 
_chem_comp.formula_weight    376.539 
_chem_comp.id                RUW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-(octylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 RUW sing 275 n n 
C9 C11 RUW sing 276 n n 
C9 N5 RUW sing 277 n n 
C8 N5 RUW sing 278 n y 
C8 N4 RUW doub 279 n y 
N5 C6 RUW sing 280 n y 
N4 C7 RUW sing 281 n y 
C6 N3 RUW doub 282 n y 
C6 C7 RUW sing 283 n y 
N3 C5 RUW sing 284 n y 
C7 C4 RUW doub 285 n y 
C15 C14 RUW sing 286 n n 
C5 N6 RUW sing 287 n n 
C5 N2 RUW doub 288 n y 
C4 N2 RUW sing 289 n y 
C4 N1 RUW sing 290 n n 
C14 C12 RUW sing 291 n n 
N6 C12 RUW sing 292 n n 
N1 C3 RUW sing 293 n n 
C12 C13 RUW sing 294 n n 
C3 C1 RUW sing 295 n n 
C13 O1 RUW sing 296 n n 
C1 C2 RUW sing 297 n n 
C16 C2 RUW sing 298 n n 
C16 C17 RUW sing 299 n n 
C17 C18 RUW sing 300 n n 
C18 C19 RUW sing 301 n n 
C19 C20 RUW sing 302 n n 
C2 H23 RUW sing 303 n n 
C2 H22 RUW sing 304 n n 
C8 H81 RUW sing 305 n n 
C11 H113 RUW sing 306 n n 
C11 H111 RUW sing 307 n n 
C11 H112 RUW sing 308 n n 
C15 H152 RUW sing 309 n n 
C15 H151 RUW sing 310 n n 
C15 H153 RUW sing 311 n n 
C16 H161 RUW sing 312 n n 
C16 H162 RUW sing 313 n n 
C17 H172 RUW sing 314 n n 
C17 H171 RUW sing 315 n n 
N1 H13 RUW sing 316 n n 
C10 H103 RUW sing 317 n n 
C10 H101 RUW sing 318 n n 
C10 H102 RUW sing 319 n n 
C13 H132 RUW sing 320 n n 
C13 H131 RUW sing 321 n n 
C14 H141 RUW sing 322 n n 
C14 H142 RUW sing 323 n n 
C20 H202 RUW sing 324 n n 
C20 H203 RUW sing 325 n n 
C20 H201 RUW sing 326 n n 
C1 H11 RUW sing 327 n n 
C1 H12 RUW sing 328 n n 
C12 H121 RUW sing 329 n n 
C18 H181 RUW sing 330 n n 
C18 H182 RUW sing 331 n n 
C19 H191 RUW sing 332 n n 
C19 H192 RUW sing 333 n n 
C3 H32 RUW sing 334 n n 
C3 H31 RUW sing 335 n n 
C9 H91 RUW sing 336 n n 
N6 H61 RUW sing 337 n n 
O1 H14 RUW sing 338 n n 
#
_atom_sites.entry_id                     8BUJ 
_atom_sites.fract_transf_matrix[1][1]    0.00401 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 3 SO4 SO4 . 
K 4 SO4 A 1 1202 5 SO4 SO4 . 
L 4 SO4 A 1 1203 27 SO4 SO4 . 
M 5 RUW B 1 1101 1101 RUW D06 . 
N 4 SO4 C 1 301 4 SO4 SO4 . 
O 4 SO4 C 1 302 30 SO4 SO4 . 
P 4 SO4 D 1 1201 2 SO4 SO4 . 
Q 4 SO4 D 1 1202 7 SO4 SO4 . 
R 4 SO4 D 1 1203 29 SO4 SO4 . 
S 5 RUW E 1 1101 1101 RUW D06 . 
T 4 SO4 F 1 301 31 SO4 SO4 . 
U 4 SO4 G 1 1201 1 SO4 SO4 . 
V 4 SO4 G 1 1202 8 SO4 SO4 . 
W 5 RUW H 1 1101 1101 RUW D06 . 
X 4 SO4 H 1 1102 33 SO4 SO4 . 
Y 4 SO4 I 1 301 12 SO4 SO4 . 
Z 4 SO4 I 1 302 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RUW . . . M 5 -64.141 22.979 -1.153 0 159.2 ? C2 RUW 1101 B 1 
HETATM 2 C C4 RUW . . . M 5 -62.765 23.168 -5.662 1 137.74 ? C4 RUW 1101 B 1 
HETATM 3 C C6 RUW . . . M 5 -61.946 24.061 -7.724 1 136.74 ? C6 RUW 1101 B 1 
HETATM 4 C C7 RUW . . . M 5 -62.996 23.553 -6.994 1 138.88 ? C7 RUW 1101 B 1 
HETATM 5 C C8 RUW . . . M 5 -63.704 24.027 -8.988 1 131.85 ? C8 RUW 1101 B 1 
HETATM 6 C C11 RUW . . . M 5 -61.253 26.325 -9.733 1 131.94 ? C11 RUW 1101 B 1 
HETATM 7 C C15 RUW . . . M 5 -57.121 24.765 -6.479 1 147.22 ? C15 RUW 1101 B 1 
HETATM 8 C C16 RUW . . . M 5 -65.119 24.17 -1.202 0 151.47 ? C16 RUW 1101 B 1 
HETATM 9 C C17 RUW . . . M 5 -65.484 24.706 0.176 0 147.41 ? C17 RUW 1101 B 1 
HETATM 10 N N1 RUW . . . M 5 -63.847 22.619 -4.843 1 127.52 ? N1 RUW 1101 B 1 
HETATM 11 C C10 RUW . . . M 5 -60.47 24.009 -10.393 1 142.07 ? C10 RUW 1101 B 1 
HETATM 12 C C13 RUW . . . M 5 -58.734 24.999 -3.202 1 183.63 ? C13 RUW 1101 B 1 
HETATM 13 C C14 RUW . . . M 5 -57.587 25.695 -5.364 1 173.3 ? C14 RUW 1101 B 1 
HETATM 14 C C20 RUW . . . M 5 -66.001 26.547 2.177 0 158.91 ? C20 RUW 1101 B 1 
HETATM 15 C C1 RUW . . . M 5 -63.326 23.001 -2.449 0 152.36 ? C1 RUW 1101 B 1 
HETATM 16 C C12 RUW . . . M 5 -58.871 25.233 -4.702 1 171.57 ? C12 RUW 1101 B 1 
HETATM 17 C C18 RUW . . . M 5 -64.236 25.309 0.824 0 148.34 ? C18 RUW 1101 B 1 
HETATM 18 C C19 RUW . . . M 5 -64.527 26.454 1.782 0 149.49 ? C19 RUW 1101 B 1 
HETATM 19 C C3 RUW . . . M 5 -64.209 23.34 -3.657 1 139.59 ? C3 RUW 1101 B 1 
HETATM 20 C C5 RUW . . . M 5 -60.567 23.801 -5.877 1 138.43 ? C5 RUW 1101 B 1 
HETATM 21 C C9 RUW . . . M 5 -61.661 24.897 -10.066 1 132.66 ? C9 RUW 1101 B 1 
HETATM 22 N N2 RUW . . . M 5 -61.553 23.311 -5.14 1 130.97 ? N2 RUW 1101 B 1 
HETATM 23 N N3 RUW . . . M 5 -60.745 24.171 -7.134 1 142.35 ? N3 RUW 1101 B 1 
HETATM 24 N N4 RUW . . . M 5 -64.061 23.549 -7.805 1 136.43 ? N4 RUW 1101 B 1 
HETATM 25 N N5 RUW . . . M 5 -62.418 24.342 -8.954 1 132.68 ? N5 RUW 1101 B 1 
HETATM 26 N N6 RUW . . . M 5 -59.269 23.951 -5.282 1 147.79 ? N6 RUW 1101 B 1 
HETATM 27 O O1 RUW . . . M 5 -59.316 23.747 -2.932 1 167.96 ? O1 RUW 1101 B 1 
HETATM 28 H H23 RUW . . . M 5 -64.617 22.173 -1.085 0 191.05 ? H23 RUW 1101 B 1 
HETATM 29 H H22 RUW . . . M 5 -63.57 23.06 -0.412 0 191.05 ? H22 RUW 1101 B 1 
HETATM 30 H H81 RUW . . . M 5 -64.265 24.126 -9.722 0 158.23 ? H81 RUW 1101 B 1 
HETATM 31 H H113 RUW . . . M 5 -62.037 26.832 -9.472 0 158.33 ? H113 RUW 1101 B 1 
HETATM 32 H H111 RUW . . . M 5 -60.615 26.317 -9.003 0 158.33 ? H111 RUW 1101 B 1 
HETATM 33 H H112 RUW . . . M 5 -60.847 26.735 -10.513 0 158.33 ? H112 RUW 1101 B 1 
HETATM 34 H H152 RUW . . . M 5 -57.785 24.712 -7.14 0 176.66 ? H152 RUW 1101 B 1 
HETATM 35 H H151 RUW . . . M 5 -56.961 23.909 -6.126 0 176.66 ? H151 RUW 1101 B 1 
HETATM 36 H H153 RUW . . . M 5 -56.329 25.1 -6.856 0 176.66 ? H153 RUW 1101 B 1 
HETATM 37 H H161 RUW . . . M 5 -65.906 23.895 -1.634 0 181.76 ? H161 RUW 1101 B 1 
HETATM 38 H H162 RUW . . . M 5 -64.725 24.863 -1.698 0 181.76 ? H162 RUW 1101 B 1 
HETATM 39 H H172 RUW . . . M 5 -66.148 25.364 0.094 0 176.9 ? H172 RUW 1101 B 1 
HETATM 40 H H171 RUW . . . M 5 -65.812 24.007 0.71 0 176.9 ? H171 RUW 1101 B 1 
HETATM 41 H H13 RUW . . . M 5 -64.254 21.886 -5.066 0 153.03 ? H13 RUW 1101 B 1 
HETATM 42 H H103 RUW . . . M 5 -60.785 23.13 -10.657 0 170.49 ? H103 RUW 1101 B 1 
HETATM 43 H H101 RUW . . . M 5 -59.902 23.928 -9.611 0 170.49 ? H101 RUW 1101 B 1 
HETATM 44 H H102 RUW . . . M 5 -59.963 24.403 -11.121 0 170.49 ? H102 RUW 1101 B 1 
HETATM 45 H H132 RUW . . . M 5 -59.185 25.673 -2.728 0 220.36 ? H132 RUW 1101 B 1 
HETATM 46 H H131 RUW . . . M 5 -57.828 24.993 -2.958 0 220.36 ? H131 RUW 1101 B 1 
HETATM 47 H H141 RUW . . . M 5 -57.726 26.551 -5.724 0 207.96 ? H141 RUW 1101 B 1 
HETATM 48 H H142 RUW . . . M 5 -56.914 25.744 -4.711 0 207.96 ? H142 RUW 1101 B 1 
HETATM 49 H H202 RUW . . . M 5 -66.09 27.112 2.922 0 190.69 ? H202 RUW 1101 B 1 
HETATM 50 H H203 RUW . . . M 5 -66.322 25.692 2.392 0 190.69 ? H203 RUW 1101 B 1 
HETATM 51 H H201 RUW . . . M 5 -66.496 26.896 1.459 0 190.69 ? H201 RUW 1101 B 1 
HETATM 52 H H11 RUW . . . M 5 -62.646 23.645 -2.374 0 182.83 ? H11 RUW 1101 B 1 
HETATM 53 H H12 RUW . . . M 5 -62.934 22.158 -2.581 0 182.83 ? H12 RUW 1101 B 1 
HETATM 54 H H121 RUW . . . M 5 -59.498 25.917 -4.846 0 205.89 ? H121 RUW 1101 B 1 
HETATM 55 H H181 RUW . . . M 5 -63.672 25.626 0.144 0 178.01 ? H181 RUW 1101 B 1 
HETATM 56 H H182 RUW . . . M 5 -63.791 24.631 1.298 0 178.01 ? H182 RUW 1101 B 1 
HETATM 57 H H191 RUW . . . M 5 -64.274 27.26 1.372 0 179.38 ? H191 RUW 1101 B 1 
HETATM 58 H H192 RUW . . . M 5 -64.014 26.334 2.559 0 179.38 ? H192 RUW 1101 B 1 
HETATM 59 H H32 RUW . . . M 5 -65.1 23.136 -3.443 0 167.51 ? H32 RUW 1101 B 1 
HETATM 60 H H31 RUW . . . M 5 -64.135 24.26 -3.832 0 167.51 ? H31 RUW 1101 B 1 
HETATM 61 H H91 RUW . . . M 5 -62.233 24.914 -10.849 0 159.19 ? H91 RUW 1101 B 1 
HETATM 62 H H61 RUW . . . M 5 -58.72 23.279 -5.265 0 177.35 ? H61 RUW 1101 B 1 
HETATM 63 H H14 RUW . . . M 5 -59.251 23.571 -2.122 0 201.56 ? H14 RUW 1101 B 1 
#
_model_server_stats.io_time_ms              133 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    82 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           63 
#