data_8BUJ
#
_model_server_result.job_id            oRuLim24CGr2jIEfPVKBzg 
_model_server_result.datetime_utc      '2024-11-04 23:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8buj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1101}' 
#
_entry.id    8BUJ 
#
_exptl.entry_id    8BUJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.539 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-(octylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUJ 
_cell.length_a            249.353 
_cell.length_b            249.353 
_cell.length_c            218.417 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O 1 1 
D,E,F,P,Q,R,S,T 2 1 
G,H,I,U,V,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 S N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C20 H36 N6 O' 
_chem_comp.formula_weight    376.539 
_chem_comp.id                RUW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-(octylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 RUW sing 275 n n 
C9 C11 RUW sing 276 n n 
C9 N5 RUW sing 277 n n 
C8 N5 RUW sing 278 n y 
C8 N4 RUW doub 279 n y 
N5 C6 RUW sing 280 n y 
N4 C7 RUW sing 281 n y 
C6 N3 RUW doub 282 n y 
C6 C7 RUW sing 283 n y 
N3 C5 RUW sing 284 n y 
C7 C4 RUW doub 285 n y 
C15 C14 RUW sing 286 n n 
C5 N6 RUW sing 287 n n 
C5 N2 RUW doub 288 n y 
C4 N2 RUW sing 289 n y 
C4 N1 RUW sing 290 n n 
C14 C12 RUW sing 291 n n 
N6 C12 RUW sing 292 n n 
N1 C3 RUW sing 293 n n 
C12 C13 RUW sing 294 n n 
C3 C1 RUW sing 295 n n 
C13 O1 RUW sing 296 n n 
C1 C2 RUW sing 297 n n 
C16 C2 RUW sing 298 n n 
C16 C17 RUW sing 299 n n 
C17 C18 RUW sing 300 n n 
C18 C19 RUW sing 301 n n 
C19 C20 RUW sing 302 n n 
C2 H23 RUW sing 303 n n 
C2 H22 RUW sing 304 n n 
C8 H81 RUW sing 305 n n 
C11 H113 RUW sing 306 n n 
C11 H111 RUW sing 307 n n 
C11 H112 RUW sing 308 n n 
C15 H152 RUW sing 309 n n 
C15 H151 RUW sing 310 n n 
C15 H153 RUW sing 311 n n 
C16 H161 RUW sing 312 n n 
C16 H162 RUW sing 313 n n 
C17 H172 RUW sing 314 n n 
C17 H171 RUW sing 315 n n 
N1 H13 RUW sing 316 n n 
C10 H103 RUW sing 317 n n 
C10 H101 RUW sing 318 n n 
C10 H102 RUW sing 319 n n 
C13 H132 RUW sing 320 n n 
C13 H131 RUW sing 321 n n 
C14 H141 RUW sing 322 n n 
C14 H142 RUW sing 323 n n 
C20 H202 RUW sing 324 n n 
C20 H203 RUW sing 325 n n 
C20 H201 RUW sing 326 n n 
C1 H11 RUW sing 327 n n 
C1 H12 RUW sing 328 n n 
C12 H121 RUW sing 329 n n 
C18 H181 RUW sing 330 n n 
C18 H182 RUW sing 331 n n 
C19 H191 RUW sing 332 n n 
C19 H192 RUW sing 333 n n 
C3 H32 RUW sing 334 n n 
C3 H31 RUW sing 335 n n 
C9 H91 RUW sing 336 n n 
N6 H61 RUW sing 337 n n 
O1 H14 RUW sing 338 n n 
#
_atom_sites.entry_id                     8BUJ 
_atom_sites.fract_transf_matrix[1][1]    0.00401 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 3 SO4 SO4 . 
K 4 SO4 A 1 1202 5 SO4 SO4 . 
L 4 SO4 A 1 1203 27 SO4 SO4 . 
M 5 RUW B 1 1101 1101 RUW D06 . 
N 4 SO4 C 1 301 4 SO4 SO4 . 
O 4 SO4 C 1 302 30 SO4 SO4 . 
P 4 SO4 D 1 1201 2 SO4 SO4 . 
Q 4 SO4 D 1 1202 7 SO4 SO4 . 
R 4 SO4 D 1 1203 29 SO4 SO4 . 
S 5 RUW E 1 1101 1101 RUW D06 . 
T 4 SO4 F 1 301 31 SO4 SO4 . 
U 4 SO4 G 1 1201 1 SO4 SO4 . 
V 4 SO4 G 1 1202 8 SO4 SO4 . 
W 5 RUW H 1 1101 1101 RUW D06 . 
X 4 SO4 H 1 1102 33 SO4 SO4 . 
Y 4 SO4 I 1 301 12 SO4 SO4 . 
Z 4 SO4 I 1 302 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RUW . . . S 5 -109.019 57.428 -46.38 0 150.7 ? C2 RUW 1101 E 1 
HETATM 2 C C4 RUW . . . S 5 -113.155 55.2 -46.984 1 136.37 ? C4 RUW 1101 E 1 
HETATM 3 C C6 RUW . . . S 5 -115.467 54.612 -46.967 1 126.22 ? C6 RUW 1101 E 1 
HETATM 4 C C7 RUW . . . S 5 -114.158 54.243 -46.75 1 133.97 ? C7 RUW 1101 E 1 
HETATM 5 C C8 RUW . . . S 5 -115.434 52.552 -46.309 1 136.86 ? C8 RUW 1101 E 1 
HETATM 6 C C11 RUW . . . S 5 -118.171 53.786 -48.175 1 146.75 ? C11 RUW 1101 E 1 
HETATM 7 C C15 RUW . . . S 5 -117.862 57.044 -50.253 1 147.89 ? C15 RUW 1101 E 1 
HETATM 8 C C16 RUW . . . S 5 -109.384 57.837 -44.95 0 154.41 ? C16 RUW 1101 E 1 
HETATM 9 C C17 RUW . . . S 5 -108.551 58.984 -44.365 0 153.73 ? C17 RUW 1101 E 1 
HETATM 10 N N1 RUW . . . S 5 -111.752 54.866 -46.766 1 141.43 ? N1 RUW 1101 E 1 
HETATM 11 C C10 RUW . . . S 5 -118.314 54.344 -45.702 1 147.85 ? C10 RUW 1101 E 1 
HETATM 12 C C13 RUW . . . S 5 -115.13 57.603 -50.436 1 158.3 ? C13 RUW 1101 E 1 
HETATM 13 C C14 RUW . . . S 5 -117.31 57.971 -49.172 1 135.22 ? C14 RUW 1101 E 1 
HETATM 14 C C20 RUW . . . S 5 -107.325 60.5 -42.311 0 159.71 ? C20 RUW 1101 E 1 
HETATM 15 C C1 RUW . . . S 5 -110.245 56.781 -47.024 0 145.3 ? C1 RUW 1101 E 1 
HETATM 16 C C12 RUW . . . S 5 -115.84 58.35 -49.309 1 121.02 ? C12 RUW 1101 E 1 
HETATM 17 C C18 RUW . . . S 5 -109.416 60.095 -43.782 0 147.55 ? C18 RUW 1101 E 1 
HETATM 18 C C19 RUW . . . S 5 -108.799 60.806 -42.574 0 148.11 ? C19 RUW 1101 E 1 
HETATM 19 C C3 RUW . . . S 5 -110.944 55.822 -46.051 1 137.2 ? C3 RUW 1101 E 1 
HETATM 20 C C5 RUW . . . S 5 -114.775 56.746 -47.597 1 155.69 ? C5 RUW 1101 E 1 
HETATM 21 C C9 RUW . . . S 5 -117.675 53.448 -46.767 1 137.87 ? C9 RUW 1101 E 1 
HETATM 22 N N2 RUW . . . S 5 -113.495 56.42 -47.393 1 133.31 ? N2 RUW 1101 E 1 
HETATM 23 N N3 RUW . . . S 5 -115.738 55.861 -47.385 1 149.29 ? N3 RUW 1101 E 1 
HETATM 24 N N4 RUW . . . S 5 -114.177 52.966 -46.346 1 133.75 ? N4 RUW 1101 E 1 
HETATM 25 N N5 RUW . . . S 5 -116.228 53.543 -46.683 1 116.06 ? N5 RUW 1101 E 1 
HETATM 26 N N6 RUW . . . S 5 -115.13 58.096 -48.049 1 147.19 ? N6 RUW 1101 E 1 
HETATM 27 O O1 RUW . . . S 5 -113.864 58.198 -50.582 1 164.81 ? O1 RUW 1101 E 1 
HETATM 28 H H23 RUW . . . S 5 -108.761 58.184 -46.873 0 180.85 ? H23 RUW 1101 E 1 
HETATM 29 H H22 RUW . . . S 5 -108.306 56.816 -46.365 0 180.85 ? H22 RUW 1101 E 1 
HETATM 30 H H81 RUW . . . S 5 -115.715 51.702 -46.06 0 164.23 ? H81 RUW 1101 E 1 
HETATM 31 H H113 RUW . . . S 5 -117.915 54.694 -48.399 0 176.1 ? H113 RUW 1101 E 1 
HETATM 32 H H111 RUW . . . S 5 -117.777 53.172 -48.813 0 176.1 ? H111 RUW 1101 E 1 
HETATM 33 H H112 RUW . . . S 5 -119.138 53.706 -48.204 0 176.1 ? H112 RUW 1101 E 1 
HETATM 34 H H152 RUW . . . S 5 -118.763 56.85 -50.069 0 177.47 ? H152 RUW 1101 E 1 
HETATM 35 H H151 RUW . . . S 5 -117.798 57.465 -51.09 0 177.47 ? H151 RUW 1101 E 1 
HETATM 36 H H153 RUW . . . S 5 -117.366 56.247 -50.265 0 177.47 ? H153 RUW 1101 E 1 
HETATM 37 H H161 RUW . . . S 5 -110.286 58.098 -44.942 0 185.29 ? H161 RUW 1101 E 1 
HETATM 38 H H162 RUW . . . S 5 -109.278 57.087 -44.396 0 185.29 ? H162 RUW 1101 E 1 
HETATM 39 H H172 RUW . . . S 5 -108.012 59.344 -45.044 0 184.48 ? H172 RUW 1101 E 1 
HETATM 40 H H171 RUW . . . S 5 -107.999 58.642 -43.687 0 184.48 ? H171 RUW 1101 E 1 
HETATM 41 H H13 RUW . . . S 5 -111.417 54.12 -47.056 0 169.71 ? H13 RUW 1101 E 1 
HETATM 42 H H103 RUW . . . S 5 -117.873 54.199 -44.85 0 177.43 ? H103 RUW 1101 E 1 
HETATM 43 H H101 RUW . . . S 5 -119.256 54.127 -45.62 0 177.43 ? H101 RUW 1101 E 1 
HETATM 44 H H102 RUW . . . S 5 -118.218 55.274 -45.962 0 177.43 ? H102 RUW 1101 E 1 
HETATM 45 H H132 RUW . . . S 5 -115.619 57.683 -51.234 0 189.96 ? H132 RUW 1101 E 1 
HETATM 46 H H131 RUW . . . S 5 -115.036 56.695 -50.213 0 189.96 ? H131 RUW 1101 E 1 
HETATM 47 H H141 RUW . . . S 5 -117.425 57.548 -48.341 0 162.27 ? H141 RUW 1101 E 1 
HETATM 48 H H142 RUW . . . S 5 -117.816 58.762 -49.183 0 162.27 ? H142 RUW 1101 E 1 
HETATM 49 H H202 RUW . . . S 5 -106.986 61.11 -41.682 0 191.65 ? H202 RUW 1101 E 1 
HETATM 50 H H203 RUW . . . S 5 -106.841 60.576 -43.113 0 191.65 ? H203 RUW 1101 E 1 
HETATM 51 H H201 RUW . . . S 5 -107.241 59.627 -41.977 0 191.65 ? H201 RUW 1101 E 1 
HETATM 52 H H11 RUW . . . S 5 -109.977 56.305 -47.787 0 174.37 ? H11 RUW 1101 E 1 
HETATM 53 H H12 RUW . . . S 5 -110.849 57.453 -47.281 0 174.37 ? H12 RUW 1101 E 1 
HETATM 54 H H121 RUW . . . S 5 -115.825 59.265 -49.519 0 145.22 ? H121 RUW 1101 E 1 
HETATM 55 H H181 RUW . . . S 5 -109.571 60.732 -44.454 0 177.06 ? H181 RUW 1101 E 1 
HETATM 56 H H182 RUW . . . S 5 -110.238 59.723 -43.519 0 177.06 ? H182 RUW 1101 E 1 
HETATM 57 H H191 RUW . . . S 5 -109.288 60.561 -41.811 0 177.73 ? H191 RUW 1101 E 1 
HETATM 58 H H192 RUW . . . S 5 -108.886 61.732 -42.707 0 177.73 ? H192 RUW 1101 E 1 
HETATM 59 H H32 RUW . . . S 5 -111.492 56.316 -45.471 0 164.64 ? H32 RUW 1101 E 1 
HETATM 60 H H31 RUW . . . S 5 -110.295 55.364 -45.55 0 164.64 ? H31 RUW 1101 E 1 
HETATM 61 H H91 RUW . . . S 5 -117.914 52.525 -46.589 0 165.45 ? H91 RUW 1101 E 1 
HETATM 62 H H61 RUW . . . S 5 -114.91 58.773 -47.552 0 176.63 ? H61 RUW 1101 E 1 
HETATM 63 H H14 RUW . . . S 5 -113.57 58.065 -51.347 0 197.77 ? H14 RUW 1101 E 1 
#
_model_server_stats.io_time_ms              140 
_model_server_stats.parse_time_ms           119 
_model_server_stats.create_model_time_ms    302 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           63 
#