data_8BUK
#
_model_server_result.job_id            Ucpdcw9rukcRnrdWqqn00w 
_model_server_result.datetime_utc      '2024-11-07 00:34:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8buk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":1101}' 
#
_entry.id    8BUK 
#
_exptl.entry_id    8BUK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.508 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-(naphthalen-2-ylmethylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUK 
_cell.length_a            248.824 
_cell.length_b            248.824 
_cell.length_c            217.984 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q 1 1 
D,E,F,R,S,T,U,V,W,X,Y 2 1 
G,H,I,Z,AA,BA,CA,DA,EA,FA,GA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 W N N 
? 5 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C23 H28 N6 O' 
_chem_comp.formula_weight    404.508 
_chem_comp.id                RWE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-(naphthalen-2-ylmethylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 RWE doub 295 n y 
C21 C22 RWE sing 296 n y 
C20 C1 RWE sing 297 n y 
C22 C23 RWE doub 298 n y 
C1 C19 RWE doub 299 n y 
C1 C4 RWE sing 300 n y 
C23 C4 RWE sing 301 n y 
C19 C18 RWE sing 302 n y 
C4 C3 RWE doub 303 n y 
C18 C2 RWE doub 304 n y 
C3 C2 RWE sing 305 n y 
C2 C5 RWE sing 306 n n 
O1 C15 RWE sing 307 n n 
C15 C14 RWE sing 308 n n 
C5 N1 RWE sing 309 n n 
C14 C16 RWE sing 310 n n 
C14 N6 RWE sing 311 n n 
N1 C6 RWE sing 312 n n 
N2 C6 RWE doub 313 n y 
N2 C7 RWE sing 314 n y 
C16 C17 RWE sing 315 n n 
N6 C7 RWE sing 316 n n 
C6 C9 RWE sing 317 n y 
C7 N3 RWE doub 318 n y 
C9 C8 RWE doub 319 n y 
C9 N4 RWE sing 320 n y 
N3 C8 RWE sing 321 n y 
C8 N5 RWE sing 322 n y 
N4 C10 RWE doub 323 n y 
C10 N5 RWE sing 324 n y 
N5 C11 RWE sing 325 n n 
C13 C11 RWE sing 326 n n 
C11 C12 RWE sing 327 n n 
C10 H101 RWE sing 328 n n 
C13 H132 RWE sing 329 n n 
C13 H131 RWE sing 330 n n 
C13 H133 RWE sing 331 n n 
C15 H151 RWE sing 332 n n 
C15 H152 RWE sing 333 n n 
C17 H172 RWE sing 334 n n 
C17 H173 RWE sing 335 n n 
C17 H171 RWE sing 336 n n 
C20 H201 RWE sing 337 n n 
C21 H211 RWE sing 338 n n 
C11 H111 RWE sing 339 n n 
C12 H122 RWE sing 340 n n 
C12 H123 RWE sing 341 n n 
C12 H121 RWE sing 342 n n 
C14 H141 RWE sing 343 n n 
C16 H161 RWE sing 344 n n 
C16 H162 RWE sing 345 n n 
C18 H181 RWE sing 346 n n 
C19 H191 RWE sing 347 n n 
C22 H221 RWE sing 348 n n 
C23 H231 RWE sing 349 n n 
C3 H31 RWE sing 350 n n 
C5 H52 RWE sing 351 n n 
C5 H51 RWE sing 352 n n 
N1 H11 RWE sing 353 n n 
N6 H61 RWE sing 354 n n 
O1 H12 RWE sing 355 n n 
#
_atom_sites.entry_id                     8BUK 
_atom_sites.fract_transf_matrix[1][1]    0.004019 
_atom_sites.fract_transf_matrix[1][2]    0.00232 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 3 SO4 SO4 . 
K 4 SO4 A 1 1202 5 SO4 SO4 . 
L 4 SO4 A 1 1203 6 SO4 SO4 . 
M 4 SO4 A 1 1204 27 SO4 SO4 . 
N 5 RWE B 1 1101 1101 RWE D08 . 
O 4 SO4 C 1 301 4 SO4 SO4 . 
P 4 SO4 C 1 302 22 SO4 SO4 . 
Q 4 SO4 C 1 303 30 SO4 SO4 . 
R 4 SO4 D 1 1201 2 SO4 SO4 . 
S 4 SO4 D 1 1202 7 SO4 SO4 . 
T 4 SO4 D 1 1203 20 SO4 SO4 . 
U 4 SO4 D 1 1204 29 SO4 SO4 . 
V 4 SO4 D 1 1205 35 SO4 SO4 . 
W 5 RWE E 1 1101 1101 RWE D08 . 
X 6 CIT F 1 301 301 CIT CIT . 
Y 4 SO4 F 1 302 21 SO4 SO4 . 
Z 4 SO4 G 1 1201 1 SO4 SO4 . 
AA 4 SO4 G 1 1202 8 SO4 SO4 . 
BA 4 SO4 G 1 1203 13 SO4 SO4 . 
CA 5 RWE H 1 1101 1101 RWE D08 . 
DA 4 SO4 H 1 1102 33 SO4 SO4 . 
EA 4 SO4 I 1 301 12 SO4 SO4 . 
FA 4 SO4 I 1 302 32 SO4 SO4 . 
GA 4 SO4 I 1 303 34 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 RWE . . . CA 5 73.2 -105.758 -8.687 1 107.26 ? C10 RWE 1101 H 1 
HETATM 2 C C13 RWE . . . CA 5 72.003 -105.994 -12.031 1 108.52 ? C13 RWE 1101 H 1 
HETATM 3 C C15 RWE . . . CA 5 77.864 -110.79 -12.516 1 107.81 ? C15 RWE 1101 H 1 
HETATM 4 C C17 RWE . . . CA 5 75.888 -110.195 -14.832 1 111.82 ? C17 RWE 1101 H 1 
HETATM 5 C C20 RWE . . . CA 5 83.09 -106.437 -10.456 1 116.21 ? C20 RWE 1101 H 1 
HETATM 6 C C21 RWE . . . CA 5 83.819 -105.433 -9.904 1 117.54 ? C21 RWE 1101 H 1 
HETATM 7 C C11 RWE . . . CA 5 71.718 -106.402 -10.609 1 107.01 ? C11 RWE 1101 H 1 
HETATM 8 C C12 RWE . . . CA 5 70.92 -107.679 -10.502 1 108.56 ? C12 RWE 1101 H 1 
HETATM 9 C C14 RWE . . . CA 5 77.104 -109.477 -12.712 1 108.74 ? C14 RWE 1101 H 1 
HETATM 10 C C16 RWE . . . CA 5 76.816 -109.198 -14.191 1 115.02 ? C16 RWE 1101 H 1 
HETATM 11 C C18 RWE . . . CA 5 79.972 -108.341 -9.758 1 114.07 ? C18 RWE 1101 H 1 
HETATM 12 C C19 RWE . . . CA 5 81.114 -107.932 -10.38 1 114.99 ? C19 RWE 1101 H 1 
HETATM 13 C C1 RWE . . . CA 5 81.893 -106.892 -9.837 1 115.98 ? C1 RWE 1101 H 1 
HETATM 14 C C2 RWE . . . CA 5 79.537 -107.731 -8.553 1 113.06 ? C2 RWE 1101 H 1 
HETATM 15 C C22 RWE . . . CA 5 83.401 -104.829 -8.707 1 117.28 ? C22 RWE 1101 H 1 
HETATM 16 C C23 RWE . . . CA 5 82.262 -105.237 -8.088 1 115.23 ? C23 RWE 1101 H 1 
HETATM 17 C C3 RWE . . . CA 5 80.291 -106.731 -8.006 1 113.38 ? C3 RWE 1101 H 1 
HETATM 18 C C4 RWE . . . CA 5 81.474 -106.278 -8.63 1 114.86 ? C4 RWE 1101 H 1 
HETATM 19 C C5 RWE . . . CA 5 78.272 -108.21 -7.877 1 110.51 ? C5 RWE 1101 H 1 
HETATM 20 C C6 RWE . . . CA 5 76.208 -107.554 -9.061 1 108.59 ? C6 RWE 1101 H 1 
HETATM 21 C C7 RWE . . . CA 5 75.524 -108.646 -11.009 1 106.82 ? C7 RWE 1101 H 1 
HETATM 22 C C8 RWE . . . CA 5 74.09 -107.213 -10.065 1 107.21 ? C8 RWE 1101 H 1 
HETATM 23 C C9 RWE . . . CA 5 74.958 -106.904 -9.033 1 106.89 ? C9 RWE 1101 H 1 
HETATM 24 N N1 RWE . . . CA 5 77.133 -107.34 -8.11 1 111.07 ? N1 RWE 1101 H 1 
HETATM 25 N N2 RWE . . . CA 5 76.461 -108.423 -10.059 1 105.96 ? N2 RWE 1101 H 1 
HETATM 26 N N3 RWE . . . CA 5 74.306 -108.072 -11.072 1 105.15 ? N3 RWE 1101 H 1 
HETATM 27 N N4 RWE . . . CA 5 74.386 -105.978 -8.166 1 111.77 ? N4 RWE 1101 H 1 
HETATM 28 N N5 RWE . . . CA 5 72.948 -106.476 -9.822 1 106.35 ? N5 RWE 1101 H 1 
HETATM 29 N N6 RWE . . . CA 5 75.845 -109.527 -11.965 1 106.49 ? N6 RWE 1101 H 1 
HETATM 30 O O1 RWE . . . CA 5 78.124 -111.028 -11.135 1 108.05 ? O1 RWE 1101 H 1 
HETATM 31 H H101 RWE . . . CA 5 72.57 -105.155 -8.315 0 128.76 ? H101 RWE 1101 H 1 
HETATM 32 H H132 RWE . . . CA 5 72.508 -106.697 -12.475 0 130.27 ? H132 RWE 1101 H 1 
HETATM 33 H H131 RWE . . . CA 5 72.522 -105.17 -12.034 0 130.27 ? H131 RWE 1101 H 1 
HETATM 34 H H133 RWE . . . CA 5 71.164 -105.85 -12.501 0 130.27 ? H133 RWE 1101 H 1 
HETATM 35 H H151 RWE . . . CA 5 78.712 -110.749 -13.008 0 129.41 ? H151 RWE 1101 H 1 
HETATM 36 H H152 RWE . . . CA 5 77.334 -111.528 -12.884 0 129.41 ? H152 RWE 1101 H 1 
HETATM 37 H H172 RWE . . . CA 5 76.265 -111.088 -14.753 0 134.23 ? H172 RWE 1101 H 1 
HETATM 38 H H173 RWE . . . CA 5 75.024 -110.167 -14.386 0 134.23 ? H173 RWE 1101 H 1 
HETATM 39 H H171 RWE . . . CA 5 75.774 -109.974 -15.773 0 134.23 ? H171 RWE 1101 H 1 
HETATM 40 H H201 RWE . . . CA 5 83.38 -106.839 -11.259 0 139.5 ? H201 RWE 1101 H 1 
HETATM 41 H H211 RWE . . . CA 5 84.611 -105.14 -10.326 0 141.09 ? H211 RWE 1101 H 1 
HETATM 42 H H111 RWE . . . CA 5 71.14 -105.688 -10.23 0 128.46 ? H111 RWE 1101 H 1 
HETATM 43 H H122 RWE . . . CA 5 71.398 -108.399 -10.951 0 130.32 ? H122 RWE 1101 H 1 
HETATM 44 H H123 RWE . . . CA 5 70.052 -107.555 -10.923 0 130.32 ? H123 RWE 1101 H 1 
HETATM 45 H H121 RWE . . . CA 5 70.797 -107.908 -9.564 0 130.32 ? H121 RWE 1101 H 1 
HETATM 46 H H141 RWE . . . CA 5 77.654 -108.727 -12.345 0 130.54 ? H141 RWE 1101 H 1 
HETATM 47 H H161 RWE . . . CA 5 76.423 -108.303 -14.271 0 138.07 ? H161 RWE 1101 H 1 
HETATM 48 H H162 RWE . . . CA 5 77.666 -109.197 -14.681 0 138.07 ? H162 RWE 1101 H 1 
HETATM 49 H H181 RWE . . . CA 5 79.464 -109.038 -10.134 0 136.93 ? H181 RWE 1101 H 1 
HETATM 50 H H191 RWE . . . CA 5 81.387 -108.349 -11.181 0 138.03 ? H191 RWE 1101 H 1 
HETATM 51 H H221 RWE . . . CA 5 83.916 -104.133 -8.33 0 140.79 ? H221 RWE 1101 H 1 
HETATM 52 H H231 RWE . . . CA 5 81.992 -104.821 -7.285 0 138.32 ? H231 RWE 1101 H 1 
HETATM 53 H H31 RWE . . . CA 5 80.017 -106.336 -7.199 0 136.1 ? H31 RWE 1101 H 1 
HETATM 54 H H52 RWE . . . CA 5 78.055 -109.108 -8.204 0 132.66 ? H52 RWE 1101 H 1 
HETATM 55 H H51 RWE . . . CA 5 78.429 -108.273 -6.912 0 132.66 ? H51 RWE 1101 H 1 
HETATM 56 H H11 RWE . . . CA 5 77.045 -106.629 -7.597 0 133.33 ? H11 RWE 1101 H 1 
HETATM 57 H H61 RWE . . . CA 5 75.274 -110.169 -12.157 0 127.84 ? H61 RWE 1101 H 1 
HETATM 58 H H12 RWE . . . CA 5 78.607 -111.719 -11.067 0 129.71 ? H12 RWE 1101 H 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           58 
#