data_8BUL
#
_model_server_result.job_id            NSE_LC0fg5wjFDNuW5Wq6Q 
_model_server_result.datetime_utc      '2024-11-04 23:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":1101}' 
#
_entry.id    8BUL 
#
_exptl.entry_id    8BUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.503 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-(3-phenylpropylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUL 
_cell.length_a            249.356 
_cell.length_b            249.356 
_cell.length_c            217.993 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q,R,S 1 1 
D,E,F,T,U,V,W,X,Y,Z,AA,BA,CA 2 1 
G,H,I,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 P N N 
? 6 Y N N 
? 6 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C21 H30 N6 O' 
_chem_comp.formula_weight    382.503 
_chem_comp.id                RSU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-(3-phenylpropylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C7 RSU sing 284 n n 
C7 C8 RSU sing 285 n n 
C7 N5 RSU sing 286 n n 
C6 N5 RSU sing 287 n y 
C6 N4 RSU doub 288 n y 
N5 C4 RSU sing 289 n y 
N4 C5 RSU sing 290 n y 
C4 N3 RSU doub 291 n y 
C4 C5 RSU sing 292 n y 
N3 C3 RSU sing 293 n y 
C13 C12 RSU sing 294 n n 
C5 C2 RSU doub 295 n y 
C3 N6 RSU sing 296 n n 
C3 N2 RSU doub 297 n y 
C12 C10 RSU sing 298 n n 
C2 N2 RSU sing 299 n y 
C2 N1 RSU sing 300 n n 
N6 C10 RSU sing 301 n n 
N1 C1 RSU sing 302 n n 
C10 C11 RSU sing 303 n n 
C1 C14 RSU sing 304 n n 
C11 O1 RSU sing 305 n n 
C14 C15 RSU sing 306 n n 
C15 C16 RSU sing 307 n n 
C16 C17 RSU doub 308 n y 
C16 C21 RSU sing 309 n y 
C17 C18 RSU sing 310 n y 
C18 C19 RSU doub 311 n y 
C21 C20 RSU doub 312 n y 
C19 C20 RSU sing 313 n y 
C1 H12 RSU sing 314 n n 
C1 H11 RSU sing 315 n n 
C10 H101 RSU sing 316 n n 
C11 H112 RSU sing 317 n n 
C11 H111 RSU sing 318 n n 
C12 H122 RSU sing 319 n n 
C12 H121 RSU sing 320 n n 
C13 H131 RSU sing 321 n n 
C13 H133 RSU sing 322 n n 
C13 H132 RSU sing 323 n n 
C14 H141 RSU sing 324 n n 
C14 H142 RSU sing 325 n n 
C15 H152 RSU sing 326 n n 
C15 H151 RSU sing 327 n n 
C17 H171 RSU sing 328 n n 
C18 H181 RSU sing 329 n n 
C19 H191 RSU sing 330 n n 
C20 H201 RSU sing 331 n n 
C21 H211 RSU sing 332 n n 
C6 H62 RSU sing 333 n n 
C7 H71 RSU sing 334 n n 
C8 H82 RSU sing 335 n n 
C8 H83 RSU sing 336 n n 
C8 H81 RSU sing 337 n n 
C9 H92 RSU sing 338 n n 
C9 H91 RSU sing 339 n n 
C9 H93 RSU sing 340 n n 
N1 H13 RSU sing 341 n n 
N6 H61 RSU sing 342 n n 
O1 H14 RSU sing 343 n n 
#
_atom_sites.entry_id                     8BUL 
_atom_sites.fract_transf_matrix[1][1]    0.00401 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 EDO A 1 1201 1201 EDO EDO . 
K 5 SO4 A 1 1202 3 SO4 SO4 . 
L 5 SO4 A 1 1203 5 SO4 SO4 . 
M 5 SO4 A 1 1204 10 SO4 SO4 . 
N 5 SO4 A 1 1205 27 SO4 SO4 . 
O 5 SO4 A 1 1206 35 SO4 SO4 . 
P 6 RSU B 1 1101 1101 RSU D11 . 
Q 5 SO4 C 1 301 4 SO4 SO4 . 
R 5 SO4 C 1 302 16 SO4 SO4 . 
S 5 SO4 C 1 303 30 SO4 SO4 . 
T 4 EDO D 1 1201 1201 EDO EDO . 
U 5 SO4 D 1 1202 2 SO4 SO4 . 
V 5 SO4 D 1 1203 7 SO4 SO4 . 
W 5 SO4 D 1 1204 20 SO4 SO4 . 
X 5 SO4 D 1 1205 34 SO4 SO4 . 
Y 6 RSU E 1 1101 1101 RSU D11 . 
Z 5 SO4 E 1 1102 36 SO4 SO4 . 
AA 5 SO4 F 1 301 17 SO4 SO4 . 
BA 5 SO4 F 1 302 31 SO4 SO4 . 
CA 5 SO4 F 1 303 38 SO4 SO4 . 
DA 5 SO4 G 1 1201 1 SO4 SO4 . 
EA 5 SO4 G 1 1202 8 SO4 SO4 . 
FA 5 SO4 G 1 1203 13 SO4 SO4 . 
GA 5 SO4 G 1 1204 14 SO4 SO4 . 
HA 6 RSU H 1 1101 1101 RSU D11 . 
IA 5 SO4 H 1 1102 33 SO4 SO4 . 
JA 5 SO4 H 1 1103 37 SO4 SO4 . 
KA 5 SO4 I 1 301 12 SO4 SO4 . 
LA 5 SO4 I 1 302 18 SO4 SO4 . 
MA 5 SO4 I 1 303 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RSU . . . HA 6 -133.08 13.745 8.718 1 110.63 ? C1 RSU 1101 H 1 
HETATM 2 C C10 RSU . . . HA 6 -133.558 11.89 13.318 1 128.94 ? C10 RSU 1101 H 1 
HETATM 3 C C11 RSU . . . HA 6 -135.025 12.093 12.93 1 125.9 ? C11 RSU 1101 H 1 
HETATM 4 C C12 RSU . . . HA 6 -133.333 11.62 14.812 1 128.37 ? C12 RSU 1101 H 1 
HETATM 5 C C13 RSU . . . HA 6 -133.877 10.306 15.299 1 103.11 ? C13 RSU 1101 H 1 
HETATM 6 C C14 RSU . . . HA 6 -132.834 15.25 8.8 1 114.74 ? C14 RSU 1101 H 1 
HETATM 7 C C15 RSU . . . HA 6 -134.089 16.06 9.123 1 125.36 ? C15 RSU 1101 H 1 
HETATM 8 C C16 RSU . . . HA 6 -133.756 17.489 9.48 1 123.42 ? C16 RSU 1101 H 1 
HETATM 9 C C17 RSU . . . HA 6 -133.086 18.256 8.545 1 122.96 ? C17 RSU 1101 H 1 
HETATM 10 C C18 RSU . . . HA 6 -132.781 19.581 8.795 1 126.83 ? C18 RSU 1101 H 1 
HETATM 11 C C19 RSU . . . HA 6 -133.176 20.162 9.976 1 129.27 ? C19 RSU 1101 H 1 
HETATM 12 C C2 RSU . . . HA 6 -131.534 12.054 9.595 1 100.35 ? C2 RSU 1101 H 1 
HETATM 13 C C20 RSU . . . HA 6 -133.873 19.425 10.906 1 108.59 ? C20 RSU 1101 H 1 
HETATM 14 C C21 RSU . . . HA 6 -134.174 18.093 10.66 1 108.7 ? C21 RSU 1101 H 1 
HETATM 15 C C3 RSU . . . HA 6 -132.113 10.897 11.546 1 111.42 ? C3 RSU 1101 H 1 
HETATM 16 C C4 RSU . . . HA 6 -130.198 10.351 10.544 1 110.98 ? C4 RSU 1101 H 1 
HETATM 17 C C5 RSU . . . HA 6 -130.362 11.282 9.532 1 106.63 ? C5 RSU 1101 H 1 
HETATM 18 C C6 RSU . . . HA 6 -128.529 10.295 9.148 1 107.93 ? C6 RSU 1101 H 1 
HETATM 19 C C7 RSU . . . HA 6 -128.39 8.634 11.041 1 109.14 ? C7 RSU 1101 H 1 
HETATM 20 C C8 RSU . . . HA 6 -127.577 9.195 12.196 1 113.95 ? C8 RSU 1101 H 1 
HETATM 21 C C9 RSU . . . HA 6 -129.371 7.568 11.493 1 114.3 ? C9 RSU 1101 H 1 
HETATM 22 N N1 RSU . . . HA 6 -131.837 13.002 8.689 1 105.66 ? N1 RSU 1101 H 1 
HETATM 23 N N2 RSU . . . HA 6 -132.38 11.845 10.622 1 96.08 ? N2 RSU 1101 H 1 
HETATM 24 N N3 RSU . . . HA 6 -131.018 10.112 11.575 1 115.98 ? N3 RSU 1101 H 1 
HETATM 25 N N4 RSU . . . HA 6 -129.29 11.241 8.647 1 113.21 ? N4 RSU 1101 H 1 
HETATM 26 N N5 RSU . . . HA 6 -129.023 9.713 10.285 1 103.68 ? N5 RSU 1101 H 1 
HETATM 27 N N6 RSU . . . HA 6 -132.992 10.769 12.549 1 110 ? N6 RSU 1101 H 1 
HETATM 28 O O1 RSU . . . HA 6 -135.138 12.487 11.552 1 104.52 ? O1 RSU 1101 H 1 
HETATM 29 H H12 RSU . . . HA 6 -133.597 13.545 7.911 0 133.07 ? H12 RSU 1101 H 1 
HETATM 30 H H11 RSU . . . HA 6 -133.609 13.462 9.492 0 133.07 ? H11 RSU 1101 H 1 
HETATM 31 H H101 RSU . . . HA 6 -133.079 12.735 13.082 0 155.04 ? H101 RSU 1101 H 1 
HETATM 32 H H112 RSU . . . HA 6 -135.517 11.257 13.076 0 151.39 ? H112 RSU 1101 H 1 
HETATM 33 H H111 RSU . . . HA 6 -135.419 12.783 13.504 0 151.39 ? H111 RSU 1101 H 1 
HETATM 34 H H122 RSU . . . HA 6 -133.752 12.343 15.326 0 154.37 ? H122 RSU 1101 H 1 
HETATM 35 H H121 RSU . . . HA 6 -132.369 11.646 14.992 0 154.37 ? H121 RSU 1101 H 1 
HETATM 36 H H131 RSU . . . HA 6 -133.66 10.193 16.24 0 124.04 ? H131 RSU 1101 H 1 
HETATM 37 H H133 RSU . . . HA 6 -134.843 10.293 15.186 0 124.04 ? H133 RSU 1101 H 1 
HETATM 38 H H132 RSU . . . HA 6 -133.481 9.58 14.786 0 124.04 ? H132 RSU 1101 H 1 
HETATM 39 H H141 RSU . . . HA 6 -132.157 15.417 9.498 0 138.01 ? H141 RSU 1101 H 1 
HETATM 40 H H142 RSU . . . HA 6 -132.472 15.553 7.933 0 138.01 ? H142 RSU 1101 H 1 
HETATM 41 H H152 RSU . . . HA 6 -134.689 16.051 8.348 0 150.75 ? H152 RSU 1101 H 1 
HETATM 42 H H151 RSU . . . HA 6 -134.562 15.64 9.873 0 150.75 ? H151 RSU 1101 H 1 
HETATM 43 H H171 RSU . . . HA 6 -132.832 17.866 7.723 0 147.87 ? H171 RSU 1101 H 1 
HETATM 44 H H181 RSU . . . HA 6 -132.304 20.085 8.155 0 152.51 ? H181 RSU 1101 H 1 
HETATM 45 H H191 RSU . . . HA 6 -132.969 21.066 10.149 0 155.44 ? H191 RSU 1101 H 1 
HETATM 46 H H201 RSU . . . HA 6 -134.148 19.827 11.715 0 130.63 ? H201 RSU 1101 H 1 
HETATM 47 H H211 RSU . . . HA 6 -134.664 17.595 11.294 0 130.75 ? H211 RSU 1101 H 1 
HETATM 48 H H62 RSU . . . HA 6 -127.705 10.031 8.76 0 129.83 ? H62 RSU 1101 H 1 
HETATM 49 H H71 RSU . . . HA 6 -127.764 8.167 10.426 0 131.29 ? H71 RSU 1101 H 1 
HETATM 50 H H82 RSU . . . HA 6 -128.173 9.629 12.831 0 137.05 ? H82 RSU 1101 H 1 
HETATM 51 H H83 RSU . . . HA 6 -127.102 8.471 12.639 0 137.05 ? H83 RSU 1101 H 1 
HETATM 52 H H81 RSU . . . HA 6 -126.937 9.844 11.857 0 137.05 ? H81 RSU 1101 H 1 
HETATM 53 H H92 RSU . . . HA 6 -130.022 7.962 12.099 0 137.48 ? H92 RSU 1101 H 1 
HETATM 54 H H91 RSU . . . HA 6 -128.89 6.857 11.951 0 137.48 ? H91 RSU 1101 H 1 
HETATM 55 H H93 RSU . . . HA 6 -129.831 7.201 10.718 0 137.48 ? H93 RSU 1101 H 1 
HETATM 56 H H13 RSU . . . HA 6 -131.259 13.18 8.05 0 127.11 ? H13 RSU 1101 H 1 
HETATM 57 H H61 RSU . . . HA 6 -133.253 9.957 12.766 0 132.31 ? H61 RSU 1101 H 1 
HETATM 58 H H14 RSU . . . HA 6 -135.946 12.681 11.394 0 125.75 ? H14 RSU 1101 H 1 
#
_model_server_stats.io_time_ms              124 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           58 
#