data_8BUN # _model_server_result.job_id 7sJMbuGxaOoTwXIVKgRyag _model_server_result.datetime_utc '2024-11-26 13:27:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":1101}' # _entry.id 8BUN # _exptl.entry_id 8BUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.545 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUN _cell.length_a 249.675 _cell.length_b 249.675 _cell.length_c 218.54 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,T 1 1 D,E,F,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 2 1 G,H,I,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 CA N N ? 5 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C25 H30 N6 O' _chem_comp.formula_weight 430.545 _chem_comp.id RNF _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 RNF sing 275 n n C7 C9 RNF sing 276 n n C7 N5 RNF sing 277 n n C6 N5 RNF sing 278 n y C6 N4 RNF doub 279 n y N5 C4 RNF sing 280 n y N4 C5 RNF sing 281 n y C4 N3 RNF doub 282 n y C4 C5 RNF sing 283 n y N3 C3 RNF sing 284 n y C5 C2 RNF doub 285 n y C13 C12 RNF sing 286 n n C12 C10 RNF sing 287 n n C3 N6 RNF sing 288 n n C3 N2 RNF doub 289 n y C2 N2 RNF sing 290 n y C2 N1 RNF sing 291 n n C10 N6 RNF sing 292 n n C10 C11 RNF sing 293 n n N1 C1 RNF sing 294 n n C11 O1 RNF sing 295 n n C1 C14 RNF sing 296 n n C14 C19 RNF doub 297 n y C14 C15 RNF sing 298 n y C19 C18 RNF sing 299 n y C15 C16 RNF doub 300 n y C18 C17 RNF doub 301 n y C16 C17 RNF sing 302 n y C17 C20 RNF sing 303 n n C20 C21 RNF doub 304 n y C20 C25 RNF sing 305 n y C21 C22 RNF sing 306 n y C25 C24 RNF doub 307 n y C22 C23 RNF doub 308 n y C24 C23 RNF sing 309 n y N1 H12 RNF sing 310 n n C6 H61 RNF sing 311 n n C7 H71 RNF sing 312 n n C8 H81 RNF sing 313 n n C8 H82 RNF sing 314 n n C8 H83 RNF sing 315 n n C9 H91 RNF sing 316 n n C9 H93 RNF sing 317 n n C9 H92 RNF sing 318 n n C11 H112 RNF sing 319 n n C11 H111 RNF sing 320 n n C15 H151 RNF sing 321 n n C16 H161 RNF sing 322 n n O1 H11 RNF sing 323 n n C1 H14 RNF sing 324 n n C1 H13 RNF sing 325 n n C10 H101 RNF sing 326 n n C12 H122 RNF sing 327 n n C12 H121 RNF sing 328 n n C13 H131 RNF sing 329 n n C13 H133 RNF sing 330 n n C13 H132 RNF sing 331 n n C18 H181 RNF sing 332 n n C19 H191 RNF sing 333 n n C21 H211 RNF sing 334 n n C22 H221 RNF sing 335 n n C23 H231 RNF sing 336 n n C24 H241 RNF sing 337 n n C25 H251 RNF sing 338 n n N6 H62 RNF sing 339 n n # _atom_sites.entry_id 8BUN _atom_sites.fract_transf_matrix[1][1] 0.004005 _atom_sites.fract_transf_matrix[1][2] 0.002312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 A 1 1201 3 SO4 SO4 . K 4 SO4 A 1 1202 5 SO4 SO4 . L 4 SO4 A 1 1203 10 SO4 SO4 . M 4 SO4 A 1 1204 11 SO4 SO4 . N 4 SO4 A 1 1205 27 SO4 SO4 . O 4 SO4 A 1 1206 35 SO4 SO4 . P 5 RNF B 1 1101 1101 RNF D16 . Q 4 SO4 C 1 301 4 SO4 SO4 . R 4 SO4 C 1 302 16 SO4 SO4 . S 4 SO4 C 1 303 22 SO4 SO4 . T 4 SO4 C 1 304 30 SO4 SO4 . U 4 SO4 D 1 1201 2 SO4 SO4 . V 4 SO4 D 1 1202 7 SO4 SO4 . W 4 SO4 D 1 1203 9 SO4 SO4 . X 4 SO4 D 1 1204 20 SO4 SO4 . Y 4 SO4 D 1 1205 25 SO4 SO4 . Z 4 SO4 D 1 1206 29 SO4 SO4 . AA 4 SO4 D 1 1207 34 SO4 SO4 . BA 4 SO4 D 1 1208 36 SO4 SO4 . CA 5 RNF E 1 1101 1101 RNF D16 . DA 4 SO4 F 1 301 17 SO4 SO4 . EA 4 SO4 F 1 302 21 SO4 SO4 . FA 4 SO4 F 1 303 26 SO4 SO4 . GA 4 SO4 F 1 304 31 SO4 SO4 . HA 4 SO4 G 1 1201 1 SO4 SO4 . IA 4 SO4 G 1 1202 8 SO4 SO4 . JA 4 SO4 G 1 1203 13 SO4 SO4 . KA 4 SO4 G 1 1204 14 SO4 SO4 . LA 4 SO4 G 1 1205 15 SO4 SO4 . MA 4 SO4 G 1 1206 28 SO4 SO4 . NA 5 RNF H 1 1101 1101 RNF D16 . OA 4 SO4 H 1 1102 33 SO4 SO4 . PA 4 SO4 H 1 1103 38 SO4 SO4 . QA 4 SO4 H 1 1104 39 SO4 SO4 . RA 4 SO4 I 1 301 12 SO4 SO4 . SA 4 SO4 I 1 302 18 SO4 SO4 . TA 4 SO4 I 1 303 32 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RNF . . . NA 5 -131.73 12.31 7.799 1 91.28 ? N1 RNF 1101 H 1 HETATM 2 C C2 RNF . . . NA 5 -131.488 11.458 8.809 1 87.92 ? C2 RNF 1101 H 1 HETATM 3 N N3 RNF . . . NA 5 -131.14 9.716 10.986 1 86.49 ? N3 RNF 1101 H 1 HETATM 4 C C4 RNF . . . NA 5 -130.208 9.9 10.046 1 85.86 ? C4 RNF 1101 H 1 HETATM 5 C C5 RNF . . . NA 5 -130.288 10.736 8.944 1 86.49 ? C5 RNF 1101 H 1 HETATM 6 C C6 RNF . . . NA 5 -128.406 9.797 8.842 1 86.82 ? C6 RNF 1101 H 1 HETATM 7 C C7 RNF . . . NA 5 -128.408 8.314 10.926 1 85.65 ? C7 RNF 1101 H 1 HETATM 8 C C8 RNF . . . NA 5 -129.368 7.19 11.183 1 85.91 ? C8 RNF 1101 H 1 HETATM 9 C C9 RNF . . . NA 5 -127.937 9.029 12.175 1 86.4 ? C9 RNF 1101 H 1 HETATM 10 C C11 RNF . . . NA 5 -134.26 11.549 13.425 1 91.34 ? C11 RNF 1101 H 1 HETATM 11 C C14 RNF . . . NA 5 -133.204 14.276 8.065 1 97.84 ? C14 RNF 1101 H 1 HETATM 12 C C15 RNF . . . NA 5 -133.875 14.513 9.25 1 98.49 ? C15 RNF 1101 H 1 HETATM 13 C C16 RNF . . . NA 5 -134.016 15.803 9.728 1 95.52 ? C16 RNF 1101 H 1 HETATM 14 O O1 RNF . . . NA 5 -135.32 11.529 12.425 1 92.33 ? O1 RNF 1101 H 1 HETATM 15 C C1 RNF . . . NA 5 -133.042 12.874 7.54 1 92.9 ? C1 RNF 1101 H 1 HETATM 16 C C10 RNF . . . NA 5 -133.239 10.44 13.157 1 98.87 ? C10 RNF 1101 H 1 HETATM 17 C C12 RNF . . . NA 5 -133.547 9.067 13.747 1 91.57 ? C12 RNF 1101 H 1 HETATM 18 C C13 RNF . . . NA 5 -132.461 8.087 13.414 1 89.51 ? C13 RNF 1101 H 1 HETATM 19 C C17 RNF . . . NA 5 -133.49 16.896 9.045 1 95.36 ? C17 RNF 1101 H 1 HETATM 20 C C18 RNF . . . NA 5 -132.816 16.632 7.856 1 95.56 ? C18 RNF 1101 H 1 HETATM 21 C C19 RNF . . . NA 5 -132.672 15.345 7.372 1 94.46 ? C19 RNF 1101 H 1 HETATM 22 C C20 RNF . . . NA 5 -133.653 18.29 9.554 1 96.25 ? C20 RNF 1101 H 1 HETATM 23 C C21 RNF . . . NA 5 -133.173 19.382 8.833 1 101.54 ? C21 RNF 1101 H 1 HETATM 24 C C22 RNF . . . NA 5 -133.317 20.672 9.305 1 103.45 ? C22 RNF 1101 H 1 HETATM 25 C C23 RNF . . . NA 5 -133.944 20.887 10.505 1 105.57 ? C23 RNF 1101 H 1 HETATM 26 C C24 RNF . . . NA 5 -134.43 19.837 11.239 1 96.29 ? C24 RNF 1101 H 1 HETATM 27 C C25 RNF . . . NA 5 -134.284 18.547 10.769 1 96.16 ? C25 RNF 1101 H 1 HETATM 28 C C3 RNF . . . NA 5 -132.234 10.464 10.788 1 87.76 ? C3 RNF 1101 H 1 HETATM 29 N N2 RNF . . . NA 5 -132.445 11.283 9.737 1 85.63 ? N2 RNF 1101 H 1 HETATM 30 N N4 RNF . . . NA 5 -129.135 10.666 8.183 1 87.21 ? N4 RNF 1101 H 1 HETATM 31 N N5 RNF . . . NA 5 -128.98 9.296 9.976 1 85.58 ? N5 RNF 1101 H 1 HETATM 32 N N6 RNF . . . NA 5 -133.223 10.353 11.685 1 90.64 ? N6 RNF 1101 H 1 HETATM 33 H H12 RNF . . . NA 5 -131.064 12.538 7.268 0 109.53 ? H12 RNF 1101 H 1 HETATM 34 H H61 RNF . . . NA 5 -127.541 9.534 8.554 0 104.19 ? H61 RNF 1101 H 1 HETATM 35 H H71 RNF . . . NA 5 -127.611 7.898 10.504 0 102.77 ? H71 RNF 1101 H 1 HETATM 36 H H81 RNF . . . NA 5 -128.938 6.519 11.741 0 103.09 ? H81 RNF 1101 H 1 HETATM 37 H H82 RNF . . . NA 5 -130.156 7.534 11.638 0 103.09 ? H82 RNF 1101 H 1 HETATM 38 H H83 RNF . . . NA 5 -129.631 6.789 10.337 0 103.09 ? H83 RNF 1101 H 1 HETATM 39 H H91 RNF . . . NA 5 -127.465 8.401 12.749 0 103.68 ? H91 RNF 1101 H 1 HETATM 40 H H93 RNF . . . NA 5 -128.705 9.39 12.651 0 103.68 ? H93 RNF 1101 H 1 HETATM 41 H H92 RNF . . . NA 5 -127.339 9.755 11.927 0 103.68 ? H92 RNF 1101 H 1 HETATM 42 H H112 RNF . . . NA 5 -133.805 12.418 13.407 0 109.61 ? H112 RNF 1101 H 1 HETATM 43 H H111 RNF . . . NA 5 -134.645 11.426 14.319 0 109.61 ? H111 RNF 1101 H 1 HETATM 44 H H151 RNF . . . NA 5 -134.238 13.791 9.736 0 118.19 ? H151 RNF 1101 H 1 HETATM 45 H H161 RNF . . . NA 5 -134.481 15.945 10.536 0 114.62 ? H161 RNF 1101 H 1 HETATM 46 H H11 RNF . . . NA 5 -135.857 12.163 12.59 0 110.8 ? H11 RNF 1101 H 1 HETATM 47 H H14 RNF . . . NA 5 -133.201 12.877 6.573 0 111.48 ? H14 RNF 1101 H 1 HETATM 48 H H13 RNF . . . NA 5 -133.721 12.3 7.953 0 111.48 ? H13 RNF 1101 H 1 HETATM 49 H H101 RNF . . . NA 5 -132.36 10.679 13.568 0 118.65 ? H101 RNF 1101 H 1 HETATM 50 H H122 RNF . . . NA 5 -134.403 8.743 13.394 0 109.89 ? H122 RNF 1101 H 1 HETATM 51 H H121 RNF . . . NA 5 -133.635 9.141 14.722 0 109.89 ? H121 RNF 1101 H 1 HETATM 52 H H131 RNF . . . NA 5 -132.369 8.02 12.448 0 107.41 ? H131 RNF 1101 H 1 HETATM 53 H H133 RNF . . . NA 5 -131.62 8.39 13.799 0 107.41 ? H133 RNF 1101 H 1 HETATM 54 H H132 RNF . . . NA 5 -132.687 7.214 13.778 0 107.41 ? H132 RNF 1101 H 1 HETATM 55 H H181 RNF . . . NA 5 -132.447 17.349 7.368 0 114.67 ? H181 RNF 1101 H 1 HETATM 56 H H191 RNF . . . NA 5 -132.209 15.197 6.564 0 113.35 ? H191 RNF 1101 H 1 HETATM 57 H H211 RNF . . . NA 5 -132.741 19.235 8.005 0 121.84 ? H211 RNF 1101 H 1 HETATM 58 H H221 RNF . . . NA 5 -132.986 21.399 8.804 0 124.13 ? H221 RNF 1101 H 1 HETATM 59 H H231 RNF . . . NA 5 -134.041 21.768 10.83 0 126.69 ? H231 RNF 1101 H 1 HETATM 60 H H241 RNF . . . NA 5 -134.862 19.994 12.063 0 115.54 ? H241 RNF 1101 H 1 HETATM 61 H H251 RNF . . . NA 5 -134.619 17.825 11.279 0 115.39 ? H251 RNF 1101 H 1 HETATM 62 H H62 RNF . . . NA 5 -134.014 10.199 11.333 0 108.77 ? H62 RNF 1101 H 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 462 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 62 #