data_8BUN
#
_model_server_result.job_id            PpvliiiRE_e1_cPjjqe5-A 
_model_server_result.datetime_utc      '2024-11-26 13:52:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bun 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1101}' 
#
_entry.id    8BUN 
#
_exptl.entry_id    8BUN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.545 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BUN 
_cell.length_a            249.675 
_cell.length_b            249.675 
_cell.length_c            218.54 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q,R,S,T 1 1 
D,E,F,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 2 1 
G,H,I,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 CA N N 
? 5 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C25 H30 N6 O' 
_chem_comp.formula_weight    430.545 
_chem_comp.id                RNF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 RNF sing 275 n n 
C7 C9 RNF sing 276 n n 
C7 N5 RNF sing 277 n n 
C6 N5 RNF sing 278 n y 
C6 N4 RNF doub 279 n y 
N5 C4 RNF sing 280 n y 
N4 C5 RNF sing 281 n y 
C4 N3 RNF doub 282 n y 
C4 C5 RNF sing 283 n y 
N3 C3 RNF sing 284 n y 
C5 C2 RNF doub 285 n y 
C13 C12 RNF sing 286 n n 
C12 C10 RNF sing 287 n n 
C3 N6 RNF sing 288 n n 
C3 N2 RNF doub 289 n y 
C2 N2 RNF sing 290 n y 
C2 N1 RNF sing 291 n n 
C10 N6 RNF sing 292 n n 
C10 C11 RNF sing 293 n n 
N1 C1 RNF sing 294 n n 
C11 O1 RNF sing 295 n n 
C1 C14 RNF sing 296 n n 
C14 C19 RNF doub 297 n y 
C14 C15 RNF sing 298 n y 
C19 C18 RNF sing 299 n y 
C15 C16 RNF doub 300 n y 
C18 C17 RNF doub 301 n y 
C16 C17 RNF sing 302 n y 
C17 C20 RNF sing 303 n n 
C20 C21 RNF doub 304 n y 
C20 C25 RNF sing 305 n y 
C21 C22 RNF sing 306 n y 
C25 C24 RNF doub 307 n y 
C22 C23 RNF doub 308 n y 
C24 C23 RNF sing 309 n y 
N1 H12 RNF sing 310 n n 
C6 H61 RNF sing 311 n n 
C7 H71 RNF sing 312 n n 
C8 H81 RNF sing 313 n n 
C8 H82 RNF sing 314 n n 
C8 H83 RNF sing 315 n n 
C9 H91 RNF sing 316 n n 
C9 H93 RNF sing 317 n n 
C9 H92 RNF sing 318 n n 
C11 H112 RNF sing 319 n n 
C11 H111 RNF sing 320 n n 
C15 H151 RNF sing 321 n n 
C16 H161 RNF sing 322 n n 
O1 H11 RNF sing 323 n n 
C1 H14 RNF sing 324 n n 
C1 H13 RNF sing 325 n n 
C10 H101 RNF sing 326 n n 
C12 H122 RNF sing 327 n n 
C12 H121 RNF sing 328 n n 
C13 H131 RNF sing 329 n n 
C13 H133 RNF sing 330 n n 
C13 H132 RNF sing 331 n n 
C18 H181 RNF sing 332 n n 
C19 H191 RNF sing 333 n n 
C21 H211 RNF sing 334 n n 
C22 H221 RNF sing 335 n n 
C23 H231 RNF sing 336 n n 
C24 H241 RNF sing 337 n n 
C25 H251 RNF sing 338 n n 
N6 H62 RNF sing 339 n n 
#
_atom_sites.entry_id                     8BUN 
_atom_sites.fract_transf_matrix[1][1]    0.004005 
_atom_sites.fract_transf_matrix[1][2]    0.002312 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 SO4 A 1 1201 3 SO4 SO4 . 
K 4 SO4 A 1 1202 5 SO4 SO4 . 
L 4 SO4 A 1 1203 10 SO4 SO4 . 
M 4 SO4 A 1 1204 11 SO4 SO4 . 
N 4 SO4 A 1 1205 27 SO4 SO4 . 
O 4 SO4 A 1 1206 35 SO4 SO4 . 
P 5 RNF B 1 1101 1101 RNF D16 . 
Q 4 SO4 C 1 301 4 SO4 SO4 . 
R 4 SO4 C 1 302 16 SO4 SO4 . 
S 4 SO4 C 1 303 22 SO4 SO4 . 
T 4 SO4 C 1 304 30 SO4 SO4 . 
U 4 SO4 D 1 1201 2 SO4 SO4 . 
V 4 SO4 D 1 1202 7 SO4 SO4 . 
W 4 SO4 D 1 1203 9 SO4 SO4 . 
X 4 SO4 D 1 1204 20 SO4 SO4 . 
Y 4 SO4 D 1 1205 25 SO4 SO4 . 
Z 4 SO4 D 1 1206 29 SO4 SO4 . 
AA 4 SO4 D 1 1207 34 SO4 SO4 . 
BA 4 SO4 D 1 1208 36 SO4 SO4 . 
CA 5 RNF E 1 1101 1101 RNF D16 . 
DA 4 SO4 F 1 301 17 SO4 SO4 . 
EA 4 SO4 F 1 302 21 SO4 SO4 . 
FA 4 SO4 F 1 303 26 SO4 SO4 . 
GA 4 SO4 F 1 304 31 SO4 SO4 . 
HA 4 SO4 G 1 1201 1 SO4 SO4 . 
IA 4 SO4 G 1 1202 8 SO4 SO4 . 
JA 4 SO4 G 1 1203 13 SO4 SO4 . 
KA 4 SO4 G 1 1204 14 SO4 SO4 . 
LA 4 SO4 G 1 1205 15 SO4 SO4 . 
MA 4 SO4 G 1 1206 28 SO4 SO4 . 
NA 5 RNF H 1 1101 1101 RNF D16 . 
OA 4 SO4 H 1 1102 33 SO4 SO4 . 
PA 4 SO4 H 1 1103 38 SO4 SO4 . 
QA 4 SO4 H 1 1104 39 SO4 SO4 . 
RA 4 SO4 I 1 301 12 SO4 SO4 . 
SA 4 SO4 I 1 302 18 SO4 SO4 . 
TA 4 SO4 I 1 303 32 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RNF . . . P 5 -63.903 22.331 -5.294 1 98.65 ? N1 RNF 1101 B 1 
HETATM 2 C C2 RNF . . . P 5 -62.988 23.007 -6.011 1 97.49 ? C2 RNF 1101 B 1 
HETATM 3 N N3 RNF . . . P 5 -61.043 24.408 -7.451 1 96.66 ? N3 RNF 1101 B 1 
HETATM 4 C C4 RNF . . . P 5 -62.196 23.996 -7.991 1 95.41 ? C4 RNF 1101 B 1 
HETATM 5 C C5 RNF . . . P 5 -63.215 23.313 -7.362 1 96.16 ? C5 RNF 1101 B 1 
HETATM 6 C C6 RNF . . . P 5 -63.851 23.604 -9.355 1 94.98 ? C6 RNF 1101 B 1 
HETATM 7 C C7 RNF . . . P 5 -61.874 24.851 -10.355 1 95.75 ? C7 RNF 1101 B 1 
HETATM 8 C C8 RNF . . . P 5 -60.574 24.124 -10.654 1 99.28 ? C8 RNF 1101 B 1 
HETATM 9 C C9 RNF . . . P 5 -61.628 26.295 -9.998 1 95.99 ? C9 RNF 1101 B 1 
HETATM 10 C C11 RNF . . . P 5 -58.591 22.515 -4.766 1 107.98 ? C11 RNF 1101 B 1 
HETATM 11 C C14 RNF . . . P 5 -64.096 22.6 -2.864 1 100.82 ? C14 RNF 1101 B 1 
HETATM 12 C C15 RNF . . . P 5 -63.181 23.267 -2.079 1 101.95 ? C15 RNF 1101 B 1 
HETATM 13 C C16 RNF . . . P 5 -63.612 24.06 -1.034 1 101.71 ? C16 RNF 1101 B 1 
HETATM 14 O O1 RNF . . . P 5 -59.227 22.841 -3.499 1 104.89 ? O1 RNF 1101 B 1 
HETATM 15 C C1 RNF . . . P 5 -63.641 21.736 -4.002 1 100.02 ? C1 RNF 1101 B 1 
HETATM 16 C C10 RNF . . . P 5 -58.478 23.754 -5.654 1 105.99 ? C10 RNF 1101 B 1 
HETATM 17 C C12 RNF . . . P 5 -58.212 23.426 -7.119 1 104.17 ? C12 RNF 1101 B 1 
HETATM 18 C C13 RNF . . . P 5 -56.909 22.72 -7.303 1 107.68 ? C13 RNF 1101 B 1 
HETATM 19 C C17 RNF . . . P 5 -64.965 24.237 -0.761 1 101.85 ? C17 RNF 1101 B 1 
HETATM 20 C C18 RNF . . . P 5 -65.864 23.584 -1.593 1 101.74 ? C18 RNF 1101 B 1 
HETATM 21 C C19 RNF . . . P 5 -65.441 22.787 -2.635 1 101.43 ? C19 RNF 1101 B 1 
HETATM 22 C C20 RNF . . . P 5 -65.45 25.128 0.332 1 102.7 ? C20 RNF 1101 B 1 
HETATM 23 C C21 RNF . . . P 5 -66.804 25.187 0.656 1 103.02 ? C21 RNF 1101 B 1 
HETATM 24 C C22 RNF . . . P 5 -67.263 26.028 1.65 1 106.44 ? C22 RNF 1101 B 1 
HETATM 25 C C23 RNF . . . P 5 -66.377 26.842 2.31 1 109.35 ? C23 RNF 1101 B 1 
HETATM 26 C C24 RNF . . . P 5 -65.045 26.834 1.996 1 104.58 ? C24 RNF 1101 B 1 
HETATM 27 C C25 RNF . . . P 5 -64.586 25.989 1.006 1 103.83 ? C25 RNF 1101 B 1 
HETATM 28 C C3 RNF . . . P 5 -60.902 24.088 -6.15 1 98.26 ? C3 RNF 1101 B 1 
HETATM 29 N N2 RNF . . . P 5 -61.833 23.412 -5.433 1 95.65 ? N2 RNF 1101 B 1 
HETATM 30 N N4 RNF . . . P 5 -64.26 23.058 -8.237 1 96.24 ? N4 RNF 1101 B 1 
HETATM 31 N N5 RNF . . . P 5 -62.609 24.164 -9.283 1 94.26 ? N5 RNF 1101 B 1 
HETATM 32 N N6 RNF . . . P 5 -59.754 24.468 -5.542 1 103.91 ? N6 RNF 1101 B 1 
HETATM 33 H H12 RNF . . . P 5 -64.712 22.244 -5.631 0 118.38 ? H12 RNF 1101 B 1 
HETATM 34 H H61 RNF . . . P 5 -64.371 23.611 -10.147 0 113.97 ? H61 RNF 1101 B 1 
HETATM 35 H H71 RNF . . . P 5 -62.449 24.826 -11.165 0 114.9 ? H71 RNF 1101 B 1 
HETATM 36 H H81 RNF . . . P 5 -59.99 24.17 -9.877 0 119.14 ? H81 RNF 1101 B 1 
HETATM 37 H H82 RNF . . . P 5 -60.135 24.542 -11.415 0 119.14 ? H82 RNF 1101 B 1 
HETATM 38 H H83 RNF . . . P 5 -60.764 23.192 -10.862 0 119.14 ? H83 RNF 1101 B 1 
HETATM 39 H H91 RNF . . . P 5 -61.047 26.342 -9.219 0 115.18 ? H91 RNF 1101 B 1 
HETATM 40 H H93 RNF . . . P 5 -62.476 26.728 -9.797 0 115.18 ? H93 RNF 1101 B 1 
HETATM 41 H H92 RNF . . . P 5 -61.203 26.747 -10.748 0 115.18 ? H92 RNF 1101 B 1 
HETATM 42 H H112 RNF . . . P 5 -57.695 22.152 -4.602 0 129.58 ? H112 RNF 1101 B 1 
HETATM 43 H H111 RNF . . . P 5 -59.116 21.829 -5.233 0 129.58 ? H111 RNF 1101 B 1 
HETATM 44 H H151 RNF . . . P 5 -62.259 23.182 -2.256 0 122.34 ? H151 RNF 1101 B 1 
HETATM 45 H H161 RNF . . . P 5 -62.973 24.493 -0.492 0 122.05 ? H161 RNF 1101 B 1 
HETATM 46 H H11 RNF . . . P 5 -59.234 22.147 -3.015 0 125.87 ? H11 RNF 1101 B 1 
HETATM 47 H H14 RNF . . . P 5 -62.679 21.571 -3.915 0 120.02 ? H14 RNF 1101 B 1 
HETATM 48 H H13 RNF . . . P 5 -64.098 20.871 -3.95 0 120.02 ? H13 RNF 1101 B 1 
HETATM 49 H H101 RNF . . . P 5 -57.721 24.325 -5.337 0 127.19 ? H101 RNF 1101 B 1 
HETATM 50 H H122 RNF . . . P 5 -58.938 22.862 -7.461 0 125 ? H122 RNF 1101 B 1 
HETATM 51 H H121 RNF . . . P 5 -58.208 24.257 -7.641 0 125 ? H121 RNF 1101 B 1 
HETATM 52 H H131 RNF . . . P 5 -56.95 21.846 -6.877 0 129.21 ? H131 RNF 1101 B 1 
HETATM 53 H H133 RNF . . . P 5 -56.196 23.244 -6.899 0 129.21 ? H133 RNF 1101 B 1 
HETATM 54 H H132 RNF . . . P 5 -56.73 22.609 -8.253 0 129.21 ? H132 RNF 1101 B 1 
HETATM 55 H H181 RNF . . . P 5 -66.789 23.689 -1.442 0 122.09 ? H181 RNF 1101 B 1 
HETATM 56 H H191 RNF . . . P 5 -66.075 22.369 -3.193 0 121.72 ? H191 RNF 1101 B 1 
HETATM 57 H H211 RNF . . . P 5 -67.417 24.641 0.188 0 123.62 ? H211 RNF 1101 B 1 
HETATM 58 H H221 RNF . . . P 5 -68.179 26.044 1.872 0 127.73 ? H221 RNF 1101 B 1 
HETATM 59 H H231 RNF . . . P 5 -66.691 27.415 2.991 0 131.22 ? H231 RNF 1101 B 1 
HETATM 60 H H241 RNF . . . P 5 -64.445 27.401 2.453 0 125.5 ? H241 RNF 1101 B 1 
HETATM 61 H H251 RNF . . . P 5 -63.669 25.993 0.78 0 124.6 ? H251 RNF 1101 B 1 
HETATM 62 H H62 RNF . . . P 5 -59.772 25.193 -5.044 0 124.69 ? H62 RNF 1101 B 1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    235 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           62 
#