data_8BUP # _model_server_result.job_id piRVdom5oTUsKi80VslYkA _model_server_result.datetime_utc '2024-11-26 12:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":1101}' # _entry.id 8BUP # _exptl.entry_id 8BUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.529 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-2-[[6-[3-(3-methylphenyl)propylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUP _cell.length_a 248.058 _cell.length_b 248.058 _cell.length_c 221.169 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 D,E,F,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 2 1 G,H,I,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 IA N N ? 5 EB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C22 H32 N6 O' _chem_comp.formula_weight 396.529 _chem_comp.id RWN _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-2-[[6-[3-(3-methylphenyl)propylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 RWN sing 275 n n C9 C7 RWN sing 276 n n C7 N5 RWN sing 277 n n N5 C6 RWN sing 278 n y N5 C4 RWN sing 279 n y C6 N4 RWN doub 280 n y C4 N3 RWN doub 281 n y C4 C5 RWN sing 282 n y N4 C5 RWN sing 283 n y N3 C3 RWN sing 284 n y C5 C2 RWN doub 285 n y C3 N6 RWN sing 286 n n C3 N2 RWN doub 287 n y N6 C10 RWN sing 288 n n C2 N2 RWN sing 289 n y C2 N1 RWN sing 290 n n C13 C12 RWN sing 291 n n C12 C10 RWN sing 292 n n N1 C1 RWN sing 293 n n C10 C11 RWN sing 294 n n C1 C14 RWN sing 295 n n C11 O1 RWN sing 296 n n C14 C15 RWN sing 297 n n C15 C16 RWN sing 298 n n C16 C17 RWN doub 299 n y C16 C21 RWN sing 300 n y C17 C18 RWN sing 301 n y C21 C20 RWN doub 302 n y C18 C19 RWN doub 303 n y C20 C19 RWN sing 304 n y C20 C22 RWN sing 305 n n C6 H62 RWN sing 306 n n C7 H71 RWN sing 307 n n C9 H93 RWN sing 308 n n C9 H91 RWN sing 309 n n C9 H92 RWN sing 310 n n C10 H101 RWN sing 311 n n C21 H211 RWN sing 312 n n C17 H171 RWN sing 313 n n C14 H142 RWN sing 314 n n C14 H141 RWN sing 315 n n C8 H81 RWN sing 316 n n C8 H82 RWN sing 317 n n C8 H83 RWN sing 318 n n C12 H122 RWN sing 319 n n C12 H121 RWN sing 320 n n C1 H11 RWN sing 321 n n C1 H12 RWN sing 322 n n C13 H132 RWN sing 323 n n C13 H133 RWN sing 324 n n C13 H131 RWN sing 325 n n C15 H151 RWN sing 326 n n C15 H152 RWN sing 327 n n O1 H14 RWN sing 328 n n C11 H111 RWN sing 329 n n C11 H112 RWN sing 330 n n C19 H191 RWN sing 331 n n C22 H221 RWN sing 332 n n C22 H223 RWN sing 333 n n C22 H222 RWN sing 334 n n C18 H181 RWN sing 335 n n N1 H13 RWN sing 336 n n N6 H61 RWN sing 337 n n # _atom_sites.entry_id 8BUP _atom_sites.fract_transf_matrix[1][1] 0.004031 _atom_sites.fract_transf_matrix[1][2] 0.002327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 A 1 1201 3 SO4 SO4 . K 4 SO4 A 1 1202 5 SO4 SO4 . L 4 SO4 A 1 1203 10 SO4 SO4 . M 4 SO4 A 1 1204 41 SO4 SO4 . N 4 SO4 A 1 1205 45 SO4 SO4 . O 4 SO4 A 1 1206 47 SO4 SO4 . P 5 RWN B 1 1101 1101 RWN D30 . Q 4 SO4 B 1 1102 44 SO4 SO4 . R 4 SO4 B 1 1103 71 SO4 SO4 . S 4 SO4 C 1 301 4 SO4 SO4 . T 4 SO4 C 1 302 30 SO4 SO4 . U 4 SO4 C 1 303 70 SO4 SO4 . V 4 SO4 D 1 1201 2 SO4 SO4 . W 4 SO4 D 1 1202 7 SO4 SO4 . X 4 SO4 D 1 1203 9 SO4 SO4 . Y 4 SO4 D 1 1204 20 SO4 SO4 . Z 4 SO4 D 1 1205 29 SO4 SO4 . AA 4 SO4 D 1 1206 34 SO4 SO4 . BA 4 SO4 D 1 1207 36 SO4 SO4 . CA 4 SO4 D 1 1208 46 SO4 SO4 . DA 4 SO4 D 1 1209 51 SO4 SO4 . EA 4 SO4 D 1 1210 53 SO4 SO4 . FA 4 SO4 D 1 1211 61 SO4 SO4 . GA 4 SO4 D 1 1212 62 SO4 SO4 . HA 4 SO4 D 1 1213 68 SO4 SO4 . IA 5 RWN E 1 1101 1101 RWN D30 . JA 4 SO4 E 1 1102 40 SO4 SO4 . KA 4 SO4 E 1 1103 43 SO4 SO4 . LA 4 SO4 E 1 1104 60 SO4 SO4 . MA 4 SO4 F 1 301 21 SO4 SO4 . NA 4 SO4 F 1 302 26 SO4 SO4 . OA 4 SO4 F 1 303 31 SO4 SO4 . PA 4 SO4 F 1 304 63 SO4 SO4 . QA 4 SO4 F 1 305 65 SO4 SO4 . RA 4 SO4 F 1 306 66 SO4 SO4 . SA 4 SO4 G 1 1201 1 SO4 SO4 . TA 4 SO4 G 1 1202 8 SO4 SO4 . UA 4 SO4 G 1 1203 13 SO4 SO4 . VA 4 SO4 G 1 1204 14 SO4 SO4 . WA 4 SO4 G 1 1205 15 SO4 SO4 . XA 4 SO4 G 1 1206 28 SO4 SO4 . YA 4 SO4 G 1 1207 42 SO4 SO4 . ZA 4 SO4 G 1 1208 49 SO4 SO4 . AB 4 SO4 G 1 1209 54 SO4 SO4 . BB 4 SO4 G 1 1210 55 SO4 SO4 . CB 4 SO4 G 1 1211 58 SO4 SO4 . DB 4 SO4 G 1 1212 72 SO4 SO4 . EB 5 RWN H 1 1101 1101 RWN D30 . FB 4 SO4 H 1 1102 33 SO4 SO4 . GB 4 SO4 H 1 1103 38 SO4 SO4 . HB 4 SO4 H 1 1104 39 SO4 SO4 . IB 4 SO4 H 1 1105 50 SO4 SO4 . JB 4 SO4 H 1 1106 56 SO4 SO4 . KB 4 SO4 H 1 1107 59 SO4 SO4 . LB 4 SO4 H 1 1108 64 SO4 SO4 . MB 4 SO4 H 1 1109 67 SO4 SO4 . NB 4 SO4 H 1 1110 69 SO4 SO4 . OB 4 SO4 I 1 301 12 SO4 SO4 . PB 4 SO4 I 1 302 32 SO4 SO4 . QB 4 SO4 I 1 303 48 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 RWN . . . EB 5 -131.324 12.082 9.201 1 129.56 ? C2 RWN 1101 H 1 HETATM 2 C C3 RWN . . . EB 5 -131.805 10.915 11.173 1 130.13 ? C3 RWN 1101 H 1 HETATM 3 C C6 RWN . . . EB 5 -128.252 10.443 8.667 1 129.87 ? C6 RWN 1101 H 1 HETATM 4 C C7 RWN . . . EB 5 -127.99 8.808 10.563 1 126.33 ? C7 RWN 1101 H 1 HETATM 5 C C9 RWN . . . EB 5 -128.909 7.654 10.902 1 126.84 ? C9 RWN 1101 H 1 HETATM 6 C C10 RWN . . . EB 5 -133.308 11.772 12.948 1 135.47 ? C10 RWN 1101 H 1 HETATM 7 C C20 RWN . . . EB 5 -132.146 19.566 8.492 1 133.02 ? C20 RWN 1101 H 1 HETATM 8 C C21 RWN . . . EB 5 -132.483 18.22 8.352 1 131.82 ? C21 RWN 1101 H 1 HETATM 9 C C17 RWN . . . EB 5 -133.729 18.27 10.387 1 130.55 ? C17 RWN 1101 H 1 HETATM 10 C C14 RWN . . . EB 5 -132.535 15.261 8.49 1 132 ? C14 RWN 1101 H 1 HETATM 11 C C5 RWN . . . EB 5 -130.12 11.356 9.109 1 129.35 ? C5 RWN 1101 H 1 HETATM 12 C C8 RWN . . . EB 5 -127.306 9.37 11.79 1 124.2 ? C8 RWN 1101 H 1 HETATM 13 C C12 RWN . . . EB 5 -133.001 11.637 14.444 1 137.38 ? C12 RWN 1101 H 1 HETATM 14 C C4 RWN . . . EB 5 -129.892 10.439 10.114 1 128.4 ? C4 RWN 1101 H 1 HETATM 15 C C1 RWN . . . EB 5 -132.876 13.786 8.267 1 131.99 ? C1 RWN 1101 H 1 HETATM 16 C C13 RWN . . . EB 5 -133.335 10.285 15.006 1 147.04 ? C13 RWN 1101 H 1 HETATM 17 C C16 RWN . . . EB 5 -133.28 17.556 9.288 1 132.42 ? C16 RWN 1101 H 1 HETATM 18 C C15 RWN . . . EB 5 -133.643 16.097 9.124 1 146.99 ? C15 RWN 1101 H 1 HETATM 19 O O1 RWN . . . EB 5 -135.105 11.886 11.292 1 132.45 ? O1 RWN 1101 H 1 HETATM 20 C C11 RWN . . . EB 5 -134.81 11.718 12.667 1 135.56 ? C11 RWN 1101 H 1 HETATM 21 C C19 RWN . . . EB 5 -132.621 20.242 9.606 1 139.48 ? C19 RWN 1101 H 1 HETATM 22 C C22 RWN . . . EB 5 -131.293 20.269 7.467 1 140.46 ? C22 RWN 1101 H 1 HETATM 23 C C18 RWN . . . EB 5 -133.403 19.603 10.547 1 129.96 ? C18 RWN 1101 H 1 HETATM 24 N N1 RWN . . . EB 5 -131.648 13.014 8.277 1 130.81 ? N1 RWN 1101 H 1 HETATM 25 N N2 RWN . . . EB 5 -132.137 11.858 10.257 1 130.06 ? N2 RWN 1101 H 1 HETATM 26 N N3 RWN . . . EB 5 -130.681 10.176 11.162 1 129.05 ? N3 RWN 1101 H 1 HETATM 27 N N4 RWN . . . EB 5 -129.072 11.354 8.196 1 130.55 ? N4 RWN 1101 H 1 HETATM 28 N N5 RWN . . . EB 5 -128.686 9.853 9.818 1 127.72 ? N5 RWN 1101 H 1 HETATM 29 N N6 RWN . . . EB 5 -132.648 10.702 12.196 1 132.81 ? N6 RWN 1101 H 1 HETATM 30 H H62 RWN . . . EB 5 -127.431 10.211 8.252 0 155.84 ? H62 RWN 1101 H 1 HETATM 31 H H71 RWN . . . EB 5 -127.276 8.439 9.977 0 151.59 ? H71 RWN 1101 H 1 HETATM 32 H H93 RWN . . . EB 5 -129.573 7.949 11.549 0 152.21 ? H93 RWN 1101 H 1 HETATM 33 H H91 RWN . . . EB 5 -128.388 6.925 11.28 0 152.21 ? H91 RWN 1101 H 1 HETATM 34 H H92 RWN . . . EB 5 -129.357 7.349 10.094 0 152.21 ? H92 RWN 1101 H 1 HETATM 35 H H101 RWN . . . EB 5 -132.942 12.647 12.631 0 162.56 ? H101 RWN 1101 H 1 HETATM 36 H H211 RWN . . . EB 5 -132.165 17.745 7.605 0 158.19 ? H211 RWN 1101 H 1 HETATM 37 H H171 RWN . . . EB 5 -134.264 17.838 11.034 0 156.66 ? H171 RWN 1101 H 1 HETATM 38 H H142 RWN . . . EB 5 -132.306 15.656 7.614 0 158.4 ? H142 RWN 1101 H 1 HETATM 39 H H141 RWN . . . EB 5 -131.738 15.305 9.071 0 158.4 ? H141 RWN 1101 H 1 HETATM 40 H H81 RWN . . . EB 5 -126.809 8.663 12.237 0 149.04 ? H81 RWN 1101 H 1 HETATM 41 H H82 RWN . . . EB 5 -126.694 10.079 11.525 0 149.04 ? H82 RWN 1101 H 1 HETATM 42 H H83 RWN . . . EB 5 -127.976 9.73 12.398 0 149.04 ? H83 RWN 1101 H 1 HETATM 43 H H122 RWN . . . EB 5 -133.508 12.319 14.933 0 164.85 ? H122 RWN 1101 H 1 HETATM 44 H H121 RWN . . . EB 5 -132.046 11.814 14.588 0 164.85 ? H121 RWN 1101 H 1 HETATM 45 H H11 RWN . . . EB 5 -133.336 13.675 7.41 0 158.38 ? H11 RWN 1101 H 1 HETATM 46 H H12 RWN . . . EB 5 -133.477 13.471 8.974 0 158.38 ? H12 RWN 1101 H 1 HETATM 47 H H132 RWN . . . EB 5 -133.113 10.262 15.953 0 176.44 ? H132 RWN 1101 H 1 HETATM 48 H H133 RWN . . . EB 5 -132.823 9.602 14.538 0 176.44 ? H133 RWN 1101 H 1 HETATM 49 H H131 RWN . . . EB 5 -134.285 10.111 14.892 0 176.44 ? H131 RWN 1101 H 1 HETATM 50 H H151 RWN . . . EB 5 -134.448 16.031 8.567 0 176.38 ? H151 RWN 1101 H 1 HETATM 51 H H152 RWN . . . EB 5 -133.858 15.722 10.005 0 176.38 ? H152 RWN 1101 H 1 HETATM 52 H H14 RWN . . . EB 5 -135.941 11.811 11.185 0 158.94 ? H14 RWN 1101 H 1 HETATM 53 H H111 RWN . . . EB 5 -135.255 12.423 13.183 0 162.67 ? H111 RWN 1101 H 1 HETATM 54 H H112 RWN . . . EB 5 -135.159 10.853 12.971 0 162.67 ? H112 RWN 1101 H 1 HETATM 55 H H191 RWN . . . EB 5 -132.405 21.154 9.72 0 167.38 ? H191 RWN 1101 H 1 HETATM 56 H H221 RWN . . . EB 5 -131.531 21.209 7.435 0 168.55 ? H221 RWN 1101 H 1 HETATM 57 H H223 RWN . . . EB 5 -131.439 19.869 6.594 0 168.55 ? H223 RWN 1101 H 1 HETATM 58 H H222 RWN . . . EB 5 -130.356 20.181 7.709 0 168.55 ? H222 RWN 1101 H 1 HETATM 59 H H181 RWN . . . EB 5 -133.716 20.077 11.302 0 155.95 ? H181 RWN 1101 H 1 HETATM 60 H H13 RWN . . . EB 5 -131.072 13.166 7.629 0 156.97 ? H13 RWN 1101 H 1 HETATM 61 H H61 RWN . . . EB 5 -132.816 9.871 12.432 0 159.37 ? H61 RWN 1101 H 1 # _model_server_stats.io_time_ms 336 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 109 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 61 #