data_8BUT # _model_server_result.job_id d3mJ46RFDpcrJhJFirDdMQ _model_server_result.datetime_utc '2024-11-29 15:46:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8but # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1101}' # _entry.id 8BUT # _exptl.entry_id 8BUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.501 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[6-[[4-(2-hydroxyethyloxy)phenyl]methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BUT _cell.length_a 249.701 _cell.length_b 249.701 _cell.length_c 218.495 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q 1 1 D,E,F,R,S,T,U,V,W,X 2 1 G,H,I,Y,Z,AA,BA,CA,DA,EA,FA,GA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 V N N ? 5 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 317 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 G SG CYS 22 G CYS 18 1_555 G SG CYS 317 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 B C TYR 184 B TYR 892 1_555 B N TPO 185 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C TPO 185 B TPO 893 1_555 B N ASN 186 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 E C TYR 184 E TYR 892 1_555 E N TPO 185 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 E C TPO 185 E TPO 893 1_555 E N ASN 186 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 H C TYR 184 H TYR 892 1_555 H N TPO 185 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 H C TPO 185 H TPO 893 1_555 H N ASN 186 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H30 N6 O3' _chem_comp.formula_weight 414.501 _chem_comp.id RQ5 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[6-[[4-(2-hydroxyethyloxy)phenyl]methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 RQ5 sing 275 n n C20 C18 RQ5 sing 276 n n C18 N5 RQ5 sing 277 n n C17 N5 RQ5 sing 278 n y C17 N4 RQ5 doub 279 n y N5 C21 RQ5 sing 280 n y N4 C16 RQ5 sing 281 n y C21 C16 RQ5 doub 282 n y C21 N6 RQ5 sing 283 n y C16 C6 RQ5 sing 284 n y O1 C4 RQ5 sing 285 n n N6 C5 RQ5 doub 286 n y C6 N3 RQ5 sing 287 n n C6 N2 RQ5 doub 288 n y C4 C3 RQ5 sing 289 n n C5 N2 RQ5 sing 290 n y C5 N1 RQ5 sing 291 n n N3 C7 RQ5 sing 292 n n N1 C3 RQ5 sing 293 n n C3 C2 RQ5 sing 294 n n C7 C8 RQ5 sing 295 n n C2 C1 RQ5 sing 296 n n C8 C9 RQ5 doub 297 n y C8 C15 RQ5 sing 298 n y C9 C10 RQ5 sing 299 n y C15 C14 RQ5 doub 300 n y C10 C11 RQ5 doub 301 n y C14 C11 RQ5 sing 302 n y C11 O2 RQ5 sing 303 n n O2 C12 RQ5 sing 304 n n C12 C13 RQ5 sing 305 n n O3 C13 RQ5 sing 306 n n C1 H1 RQ5 sing 307 n n C1 H3 RQ5 sing 308 n n C1 H2 RQ5 sing 309 n n C2 H5 RQ5 sing 310 n n C2 H4 RQ5 sing 311 n n C3 H6 RQ5 sing 312 n n C4 H7 RQ5 sing 313 n n C4 H8 RQ5 sing 314 n n C7 H12 RQ5 sing 315 n n C7 H13 RQ5 sing 316 n n C9 H14 RQ5 sing 317 n n C10 H15 RQ5 sing 318 n n C12 H16 RQ5 sing 319 n n C12 H17 RQ5 sing 320 n n C13 H18 RQ5 sing 321 n n C13 H19 RQ5 sing 322 n n C14 H21 RQ5 sing 323 n n C15 H22 RQ5 sing 324 n n C17 H23 RQ5 sing 325 n n C19 H26 RQ5 sing 326 n n C19 H27 RQ5 sing 327 n n C19 H25 RQ5 sing 328 n n C18 H24 RQ5 sing 329 n n C20 H28 RQ5 sing 330 n n C20 H29 RQ5 sing 331 n n C20 H30 RQ5 sing 332 n n N1 H10 RQ5 sing 333 n n N3 H11 RQ5 sing 334 n n O1 H9 RQ5 sing 335 n n O3 H20 RQ5 sing 336 n n # _atom_sites.entry_id 8BUT _atom_sites.fract_transf_matrix[1][1] 0.004005 _atom_sites.fract_transf_matrix[1][2] 0.002312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 SO4 A 1 1201 1 SO4 SO4 . K 4 SO4 A 1 1202 9 SO4 SO4 . L 4 SO4 A 1 1203 11 SO4 SO4 . M 4 SO4 A 1 1204 12 SO4 SO4 . N 5 RQ5 B 1 1101 1101 RQ5 D61 . O 4 SO4 C 1 301 6 SO4 SO4 . P 4 SO4 C 1 302 13 SO4 SO4 . Q 4 SO4 C 1 303 20 SO4 SO4 . R 4 SO4 D 1 1201 3 SO4 SO4 . S 4 SO4 D 1 1202 5 SO4 SO4 . T 4 SO4 D 1 1203 16 SO4 SO4 . U 4 SO4 D 1 1204 21 SO4 SO4 . V 5 RQ5 E 1 1101 1101 RQ5 D61 . W 4 SO4 F 1 301 2 SO4 SO4 . X 4 SO4 F 1 302 17 SO4 SO4 . Y 4 SO4 G 1 1201 7 SO4 SO4 . Z 4 SO4 G 1 1202 8 SO4 SO4 . AA 4 SO4 G 1 1203 10 SO4 SO4 . BA 4 SO4 G 1 1204 15 SO4 SO4 . CA 4 SO4 G 1 1205 19 SO4 SO4 . DA 5 RQ5 H 1 1101 1101 RQ5 D61 . EA 4 SO4 I 1 301 4 SO4 SO4 . FA 4 SO4 I 1 302 14 SO4 SO4 . GA 4 SO4 I 1 303 18 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RQ5 . . . V 5 -113.961 59.935 -50.908 1 141.13 ? C1 RQ5 1101 E 1 HETATM 2 C C2 RQ5 . . . V 5 -114.554 59.536 -49.58 1 145.11 ? C2 RQ5 1101 E 1 HETATM 3 C C3 RQ5 . . . V 5 -114.459 58.033 -49.302 1 153.59 ? C3 RQ5 1101 E 1 HETATM 4 C C4 RQ5 . . . V 5 -115.519 57.208 -50.028 1 154.51 ? C4 RQ5 1101 E 1 HETATM 5 C C5 RQ5 . . . V 5 -114.373 56.572 -47.366 1 129.52 ? C5 RQ5 1101 E 1 HETATM 6 C C6 RQ5 . . . V 5 -112.868 55.018 -46.494 1 124.65 ? C6 RQ5 1101 E 1 HETATM 7 C C7 RQ5 . . . V 5 -110.488 55.519 -46.666 1 128.48 ? C7 RQ5 1101 E 1 HETATM 8 C C8 RQ5 . . . V 5 -109.916 56.545 -45.714 1 128.51 ? C8 RQ5 1101 E 1 HETATM 9 C C9 RQ5 . . . V 5 -108.921 56.203 -44.812 1 139.81 ? C9 RQ5 1101 E 1 HETATM 10 C C10 RQ5 . . . V 5 -108.373 57.14 -43.952 1 142.72 ? C10 RQ5 1101 E 1 HETATM 11 C C11 RQ5 . . . V 5 -108.825 58.449 -43.976 1 144.2 ? C11 RQ5 1101 E 1 HETATM 12 C C12 RQ5 . . . V 5 -109.037 60.179 -42.289 1 131.79 ? C12 RQ5 1101 E 1 HETATM 13 C C13 RQ5 . . . V 5 -108.706 61.613 -42.563 1 135.21 ? C13 RQ5 1101 E 1 HETATM 14 C C14 RQ5 . . . V 5 -109.79 58.822 -44.903 1 131.48 ? C14 RQ5 1101 E 1 HETATM 15 C C15 RQ5 . . . V 5 -110.327 57.871 -45.758 1 130.08 ? C15 RQ5 1101 E 1 HETATM 16 C C17 RQ5 . . . V 5 -115.321 52.515 -46.082 1 119.1 ? C17 RQ5 1101 E 1 HETATM 17 C C19 RQ5 . . . V 5 -117.927 52.487 -47.797 1 116.36 ? C19 RQ5 1101 E 1 HETATM 18 C C21 RQ5 . . . V 5 -115.168 54.569 -46.792 1 122.99 ? C21 RQ5 1101 E 1 HETATM 19 C C16 RQ5 . . . V 5 -113.936 54.104 -46.376 1 122.12 ? C16 RQ5 1101 E 1 HETATM 20 C C18 RQ5 . . . V 5 -117.469 53.61 -46.9 1 117.74 ? C18 RQ5 1101 E 1 HETATM 21 C C20 RQ5 . . . V 5 -118.304 53.64 -45.627 1 115.24 ? C20 RQ5 1101 E 1 HETATM 22 N N1 RQ5 . . . V 5 -114.54 57.804 -47.857 1 144.69 ? N1 RQ5 1101 E 1 HETATM 23 N N2 RQ5 . . . V 5 -113.122 56.237 -47.001 1 128.81 ? N2 RQ5 1101 E 1 HETATM 24 N N3 RQ5 . . . V 5 -111.599 54.738 -46.156 1 124.25 ? N3 RQ5 1101 E 1 HETATM 25 N N4 RQ5 . . . V 5 -114.044 52.792 -45.929 1 120.24 ? N4 RQ5 1101 E 1 HETATM 26 N N5 RQ5 . . . V 5 -116.05 53.543 -46.589 1 119.83 ? N5 RQ5 1101 E 1 HETATM 27 N N6 RQ5 . . . V 5 -115.454 55.777 -47.292 1 125.92 ? N6 RQ5 1101 E 1 HETATM 28 O O1 RQ5 . . . V 5 -116.779 57.293 -49.395 1 156.23 ? O1 RQ5 1101 E 1 HETATM 29 O O2 RQ5 . . . V 5 -108.226 59.355 -43.137 1 137.65 ? O2 RQ5 1101 E 1 HETATM 30 O O3 RQ5 . . . V 5 -109.088 61.982 -43.879 1 157.96 ? O3 RQ5 1101 E 1 HETATM 31 H H1 RQ5 . . . V 5 -114.43 59.473 -51.625 0 169.35 ? H1 RQ5 1101 E 1 HETATM 32 H H3 RQ5 . . . V 5 -114.053 60.896 -51.029 0 169.35 ? H3 RQ5 1101 E 1 HETATM 33 H H2 RQ5 . . . V 5 -113.019 59.694 -50.93 0 169.35 ? H2 RQ5 1101 E 1 HETATM 34 H H5 RQ5 . . . V 5 -114.09 60.02 -48.864 0 174.14 ? H5 RQ5 1101 E 1 HETATM 35 H H4 RQ5 . . . V 5 -115.498 59.803 -49.558 0 174.14 ? H4 RQ5 1101 E 1 HETATM 36 H H6 RQ5 . . . V 5 -113.569 57.712 -49.626 0 184.31 ? H6 RQ5 1101 E 1 HETATM 37 H H7 RQ5 . . . V 5 -115.231 56.271 -50.055 0 185.41 ? H7 RQ5 1101 E 1 HETATM 38 H H8 RQ5 . . . V 5 -115.596 57.53 -50.952 0 185.41 ? H8 RQ5 1101 E 1 HETATM 39 H H12 RQ5 . . . V 5 -110.785 55.983 -47.477 0 154.17 ? H12 RQ5 1101 E 1 HETATM 40 H H13 RQ5 . . . V 5 -109.77 54.903 -46.922 0 154.17 ? H13 RQ5 1101 E 1 HETATM 41 H H14 RQ5 . . . V 5 -108.61 55.313 -44.782 0 167.77 ? H14 RQ5 1101 E 1 HETATM 42 H H15 RQ5 . . . V 5 -107.692 56.887 -43.35 0 171.26 ? H15 RQ5 1101 E 1 HETATM 43 H H16 RQ5 . . . V 5 -108.861 59.967 -41.349 0 158.14 ? H16 RQ5 1101 E 1 HETATM 44 H H17 RQ5 . . . V 5 -109.986 60.014 -42.472 0 158.14 ? H17 RQ5 1101 E 1 HETATM 45 H H18 RQ5 . . . V 5 -107.742 61.753 -42.455 0 162.25 ? H18 RQ5 1101 E 1 HETATM 46 H H19 RQ5 . . . V 5 -109.171 62.186 -41.918 0 162.25 ? H19 RQ5 1101 E 1 HETATM 47 H H21 RQ5 . . . V 5 -110.078 59.719 -44.951 0 157.78 ? H21 RQ5 1101 E 1 HETATM 48 H H22 RQ5 . . . V 5 -110.985 58.132 -46.381 0 156.09 ? H22 RQ5 1101 E 1 HETATM 49 H H23 RQ5 . . . V 5 -115.704 51.677 -45.861 0 142.92 ? H23 RQ5 1101 E 1 HETATM 50 H H26 RQ5 . . . V 5 -118.857 52.629 -48.044 0 139.64 ? H26 RQ5 1101 E 1 HETATM 51 H H27 RQ5 . . . V 5 -117.842 51.64 -47.325 0 139.64 ? H27 RQ5 1101 E 1 HETATM 52 H H25 RQ5 . . . V 5 -117.377 52.468 -48.599 0 139.64 ? H25 RQ5 1101 E 1 HETATM 53 H H24 RQ5 . . . V 5 -117.61 54.456 -47.401 0 141.29 ? H24 RQ5 1101 E 1 HETATM 54 H H28 RQ5 . . . V 5 -118.227 52.785 -45.168 0 138.28 ? H28 RQ5 1101 E 1 HETATM 55 H H29 RQ5 . . . V 5 -119.236 53.803 -45.854 0 138.28 ? H29 RQ5 1101 E 1 HETATM 56 H H30 RQ5 . . . V 5 -117.983 54.35 -45.045 0 138.28 ? H30 RQ5 1101 E 1 HETATM 57 H H10 RQ5 . . . V 5 -114.698 58.48 -47.316 0 173.62 ? H10 RQ5 1101 E 1 HETATM 58 H H11 RQ5 . . . V 5 -111.435 54.064 -45.611 0 149.1 ? H11 RQ5 1101 E 1 HETATM 59 H H9 RQ5 . . . V 5 -116.999 58.108 -49.343 0 187.47 ? H9 RQ5 1101 E 1 HETATM 60 H H20 RQ5 . . . V 5 -108.985 62.816 -43.977 0 189.56 ? H20 RQ5 1101 E 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 60 #