data_8BUV
#
_model_server_result.job_id            Fk2VustbDNRM4nhNsgB23w 
_model_server_result.datetime_utc      '2024-11-22 19:01:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8buv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    8BUV 
#
_exptl.entry_id    8BUV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.9 
_cell.angle_gamma         90 
_cell.entry_id            8BUV 
_cell.length_a            53.84 
_cell.length_b            65.16 
_cell.length_c            69.79 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BUV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc3 E MG MG . B MG 301 1_555 P O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 E MG MG . B MG 301 1_555 P O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc5 E MG MG . B MG 301 1_555 P O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc6 E MG MG . B MG 301 1_555 P O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 L MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 L MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc9 L MG MG . D MG 301 1_555 R O HOH . D HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc10 L MG MG . D MG 301 1_555 R O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc11 L MG MG . D MG 301 1_555 R O HOH . D HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc12 L MG MG . D MG 301 1_555 R O HOH . D HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 119 n n 
C1 C2 EDO sing 120 n n 
C1 H11 EDO sing 121 n n 
C1 H12 EDO sing 122 n n 
O1 HO1 EDO sing 123 n n 
C2 O2 EDO sing 124 n n 
C2 H21 EDO sing 125 n n 
C2 H22 EDO sing 126 n n 
O2 HO2 EDO sing 127 n n 
#
_atom_sites.entry_id                     8BUV 
_atom_sites.fract_transf_matrix[1][1]    0.018574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003242 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG B 1 301 1 MG MG . 
F 3 EDO B 1 302 3 EDO EDO . 
G 3 EDO B 1 303 4 EDO EDO . 
H 3 EDO B 1 304 5 EDO EDO . 
I 3 EDO B 1 305 7 EDO EDO . 
J 4 723 B 1 306 2 723 LIG . 
K 3 EDO C 1 501 6 EDO EDO . 
L 2 MG D 1 301 2 MG MG . 
M 3 EDO D 1 302 1 EDO EDO . 
N 4 723 D 1 303 1 723 LIG . 
O 5 HOH A 1 501 45 HOH HOH . 
O 5 HOH A 2 502 46 HOH HOH . 
O 5 HOH A 3 503 163 HOH HOH . 
O 5 HOH A 4 504 173 HOH HOH . 
O 5 HOH A 5 505 113 HOH HOH . 
O 5 HOH A 6 506 44 HOH HOH . 
O 5 HOH A 7 507 106 HOH HOH . 
O 5 HOH A 8 508 47 HOH HOH . 
O 5 HOH A 9 509 124 HOH HOH . 
O 5 HOH A 10 510 164 HOH HOH . 
O 5 HOH A 11 511 171 HOH HOH . 
O 5 HOH A 12 512 153 HOH HOH . 
P 5 HOH B 1 401 139 HOH HOH . 
P 5 HOH B 2 402 159 HOH HOH . 
P 5 HOH B 3 403 16 HOH HOH . 
P 5 HOH B 4 404 102 HOH HOH . 
P 5 HOH B 5 405 115 HOH HOH . 
P 5 HOH B 6 406 7 HOH HOH . 
P 5 HOH B 7 407 39 HOH HOH . 
P 5 HOH B 8 408 13 HOH HOH . 
P 5 HOH B 9 409 103 HOH HOH . 
P 5 HOH B 10 410 43 HOH HOH . 
P 5 HOH B 11 411 61 HOH HOH . 
P 5 HOH B 12 412 10 HOH HOH . 
P 5 HOH B 13 413 160 HOH HOH . 
P 5 HOH B 14 414 54 HOH HOH . 
P 5 HOH B 15 415 144 HOH HOH . 
P 5 HOH B 16 416 21 HOH HOH . 
P 5 HOH B 17 417 36 HOH HOH . 
P 5 HOH B 18 418 89 HOH HOH . 
P 5 HOH B 19 419 12 HOH HOH . 
P 5 HOH B 20 420 107 HOH HOH . 
P 5 HOH B 21 421 56 HOH HOH . 
P 5 HOH B 22 422 72 HOH HOH . 
P 5 HOH B 23 423 37 HOH HOH . 
P 5 HOH B 24 424 154 HOH HOH . 
P 5 HOH B 25 425 38 HOH HOH . 
P 5 HOH B 26 426 57 HOH HOH . 
P 5 HOH B 27 427 59 HOH HOH . 
P 5 HOH B 28 428 22 HOH HOH . 
P 5 HOH B 29 429 161 HOH HOH . 
P 5 HOH B 30 430 5 HOH HOH . 
P 5 HOH B 31 431 105 HOH HOH . 
P 5 HOH B 32 432 4 HOH HOH . 
P 5 HOH B 33 433 58 HOH HOH . 
P 5 HOH B 34 434 18 HOH HOH . 
P 5 HOH B 35 435 71 HOH HOH . 
P 5 HOH B 36 436 9 HOH HOH . 
P 5 HOH B 37 437 90 HOH HOH . 
P 5 HOH B 38 438 143 HOH HOH . 
P 5 HOH B 39 439 135 HOH HOH . 
P 5 HOH B 40 440 75 HOH HOH . 
P 5 HOH B 41 441 55 HOH HOH . 
P 5 HOH B 42 442 96 HOH HOH . 
P 5 HOH B 43 443 100 HOH HOH . 
P 5 HOH B 44 444 92 HOH HOH . 
P 5 HOH B 45 445 166 HOH HOH . 
P 5 HOH B 46 446 93 HOH HOH . 
P 5 HOH B 47 447 73 HOH HOH . 
P 5 HOH B 48 448 109 HOH HOH . 
P 5 HOH B 49 449 155 HOH HOH . 
P 5 HOH B 50 450 82 HOH HOH . 
P 5 HOH B 51 451 14 HOH HOH . 
P 5 HOH B 52 452 74 HOH HOH . 
P 5 HOH B 53 453 99 HOH HOH . 
P 5 HOH B 54 454 62 HOH HOH . 
P 5 HOH B 55 455 15 HOH HOH . 
P 5 HOH B 56 456 125 HOH HOH . 
P 5 HOH B 57 457 101 HOH HOH . 
P 5 HOH B 58 458 138 HOH HOH . 
P 5 HOH B 59 459 35 HOH HOH . 
P 5 HOH B 60 460 83 HOH HOH . 
P 5 HOH B 61 461 32 HOH HOH . 
P 5 HOH B 62 462 141 HOH HOH . 
P 5 HOH B 63 463 53 HOH HOH . 
P 5 HOH B 64 464 128 HOH HOH . 
P 5 HOH B 65 465 121 HOH HOH . 
P 5 HOH B 66 466 140 HOH HOH . 
P 5 HOH B 67 467 165 HOH HOH . 
P 5 HOH B 68 468 116 HOH HOH . 
P 5 HOH B 69 469 108 HOH HOH . 
Q 5 HOH C 1 601 111 HOH HOH . 
Q 5 HOH C 2 602 104 HOH HOH . 
Q 5 HOH C 3 603 97 HOH HOH . 
Q 5 HOH C 4 604 84 HOH HOH . 
Q 5 HOH C 5 605 98 HOH HOH . 
Q 5 HOH C 6 606 87 HOH HOH . 
Q 5 HOH C 7 607 86 HOH HOH . 
Q 5 HOH C 8 608 118 HOH HOH . 
Q 5 HOH C 9 609 3 HOH HOH . 
Q 5 HOH C 10 610 156 HOH HOH . 
Q 5 HOH C 11 611 119 HOH HOH . 
Q 5 HOH C 12 612 112 HOH HOH . 
R 5 HOH D 1 401 51 HOH HOH . 
R 5 HOH D 2 402 70 HOH HOH . 
R 5 HOH D 3 403 6 HOH HOH . 
R 5 HOH D 4 404 172 HOH HOH . 
R 5 HOH D 5 405 29 HOH HOH . 
R 5 HOH D 6 406 41 HOH HOH . 
R 5 HOH D 7 407 66 HOH HOH . 
R 5 HOH D 8 408 34 HOH HOH . 
R 5 HOH D 9 409 169 HOH HOH . 
R 5 HOH D 10 410 133 HOH HOH . 
R 5 HOH D 11 411 65 HOH HOH . 
R 5 HOH D 12 412 132 HOH HOH . 
R 5 HOH D 13 413 63 HOH HOH . 
R 5 HOH D 14 414 77 HOH HOH . 
R 5 HOH D 15 415 142 HOH HOH . 
R 5 HOH D 16 416 64 HOH HOH . 
R 5 HOH D 17 417 11 HOH HOH . 
R 5 HOH D 18 418 28 HOH HOH . 
R 5 HOH D 19 419 30 HOH HOH . 
R 5 HOH D 20 420 123 HOH HOH . 
R 5 HOH D 21 421 24 HOH HOH . 
R 5 HOH D 22 422 26 HOH HOH . 
R 5 HOH D 23 423 8 HOH HOH . 
R 5 HOH D 24 424 78 HOH HOH . 
R 5 HOH D 25 425 76 HOH HOH . 
R 5 HOH D 26 426 69 HOH HOH . 
R 5 HOH D 27 427 80 HOH HOH . 
R 5 HOH D 28 428 148 HOH HOH . 
R 5 HOH D 29 429 131 HOH HOH . 
R 5 HOH D 30 430 152 HOH HOH . 
R 5 HOH D 31 431 120 HOH HOH . 
R 5 HOH D 32 432 137 HOH HOH . 
R 5 HOH D 33 433 146 HOH HOH . 
R 5 HOH D 34 434 79 HOH HOH . 
R 5 HOH D 35 435 17 HOH HOH . 
R 5 HOH D 36 436 149 HOH HOH . 
R 5 HOH D 37 437 147 HOH HOH . 
R 5 HOH D 38 438 145 HOH HOH . 
R 5 HOH D 39 439 136 HOH HOH . 
R 5 HOH D 40 440 91 HOH HOH . 
R 5 HOH D 41 441 150 HOH HOH . 
R 5 HOH D 42 442 49 HOH HOH . 
R 5 HOH D 43 443 23 HOH HOH . 
R 5 HOH D 44 444 94 HOH HOH . 
R 5 HOH D 45 445 68 HOH HOH . 
R 5 HOH D 46 446 27 HOH HOH . 
R 5 HOH D 47 447 48 HOH HOH . 
R 5 HOH D 48 448 88 HOH HOH . 
R 5 HOH D 49 449 31 HOH HOH . 
R 5 HOH D 50 450 95 HOH HOH . 
R 5 HOH D 51 451 25 HOH HOH . 
R 5 HOH D 52 452 19 HOH HOH . 
R 5 HOH D 53 453 52 HOH HOH . 
R 5 HOH D 54 454 126 HOH HOH . 
R 5 HOH D 55 455 33 HOH HOH . 
R 5 HOH D 56 456 67 HOH HOH . 
R 5 HOH D 57 457 40 HOH HOH . 
R 5 HOH D 58 458 127 HOH HOH . 
R 5 HOH D 59 459 50 HOH HOH . 
R 5 HOH D 60 460 42 HOH HOH . 
R 5 HOH D 61 461 151 HOH HOH . 
R 5 HOH D 62 462 170 HOH HOH . 
R 5 HOH D 63 463 130 HOH HOH . 
R 5 HOH D 64 464 162 HOH HOH . 
R 5 HOH D 65 465 134 HOH HOH . 
R 5 HOH D 66 466 168 HOH HOH . 
R 5 HOH D 67 467 60 HOH HOH . 
R 5 HOH D 68 468 157 HOH HOH . 
R 5 HOH D 69 469 129 HOH HOH . 
R 5 HOH D 70 470 110 HOH HOH . 
R 5 HOH D 71 471 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 3 4.709 12.229 44.271 1 59.13 ? C1 EDO 501 C 1 
HETATM 2 O O1 EDO . . . K 3 4.141 13.023 43.252 1 57.19 ? O1 EDO 501 C 1 
HETATM 3 C C2 EDO . . . K 3 3.746 11.135 44.662 1 61.33 ? C2 EDO 501 C 1 
HETATM 4 O O2 EDO . . . K 3 2.424 11.629 44.661 1 63.95 ? O2 EDO 501 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#