data_8BV0 # _model_server_result.job_id MmYtIolealgLkdyr91HIXQ _model_server_result.datetime_utc '2024-11-15 13:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8BV0 # _exptl.entry_id 8BV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BV0 _cell.length_a 128.56 _cell.length_b 128.56 _cell.length_c 170.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8BV0 _atom_sites.fract_transf_matrix[1][1] 0.007778 _atom_sites.fract_transf_matrix[1][2] 0.004491 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 501 550 ADP ADP . F 3 ADP C 1 501 550 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 3 -49.303 -49.603 32.105 1 68.27 ? PB ADP 501 C 1 HETATM 2 O O1B ADP . . . F 3 -48.862 -48.948 30.82 1 68.05 ? O1B ADP 501 C 1 HETATM 3 O O2B ADP . . . F 3 -48.172 -50.28 32.84 1 67.93 ? O2B ADP 501 C 1 HETATM 4 O O3B ADP . . . F 3 -50.095 -48.678 32.989 1 69.22 ? O3B ADP 501 C 1 HETATM 5 P PA ADP . . . F 3 -51.918 -50.874 31.836 1 69.28 ? PA ADP 501 C 1 HETATM 6 O O1A ADP . . . F 3 -52.574 -50.139 30.715 1 69.66 ? O1A ADP 501 C 1 HETATM 7 O O2A ADP . . . F 3 -52.291 -50.509 33.232 1 70.09 ? O2A ADP 501 C 1 HETATM 8 O O3A ADP . . . F 3 -50.328 -50.767 31.681 1 68.38 ? O3A ADP 501 C 1 HETATM 9 O O5' ADP . . . F 3 -52.11 -52.449 31.641 1 69.2 ? O5' ADP 501 C 1 HETATM 10 C C5' ADP . . . F 3 -52.522 -52.96 30.353 1 69.33 ? C5' ADP 501 C 1 HETATM 11 C C4' ADP . . . F 3 -53.488 -54.094 30.578 1 70.1 ? C4' ADP 501 C 1 HETATM 12 O O4' ADP . . . F 3 -52.962 -54.932 31.633 1 69.95 ? O4' ADP 501 C 1 HETATM 13 C C3' ADP . . . F 3 -54.894 -53.684 31.034 1 71.23 ? C3' ADP 501 C 1 HETATM 14 O O3' ADP . . . F 3 -55.815 -53.781 29.955 1 72.01 ? O3' ADP 501 C 1 HETATM 15 C C2' ADP . . . F 3 -55.252 -54.659 32.165 1 71.86 ? C2' ADP 501 C 1 HETATM 16 O O2' ADP . . . F 3 -56.404 -55.414 31.852 1 73.02 ? O2' ADP 501 C 1 HETATM 17 C C1' ADP . . . F 3 -54.025 -55.562 32.301 1 70.98 ? C1' ADP 501 C 1 HETATM 18 N N9 ADP . . . F 3 -53.616 -55.79 33.683 1 71.13 ? N9 ADP 501 C 1 HETATM 19 C C8 ADP . . . F 3 -52.626 -55.141 34.378 1 70.58 ? C8 ADP 501 C 1 HETATM 20 N N7 ADP . . . F 3 -52.487 -55.565 35.609 1 71.2 ? N7 ADP 501 C 1 HETATM 21 C C5 ADP . . . F 3 -53.45 -56.555 35.74 1 72.18 ? C5 ADP 501 C 1 HETATM 22 C C6 ADP . . . F 3 -53.816 -57.389 36.815 1 73.41 ? C6 ADP 501 C 1 HETATM 23 N N6 ADP . . . F 3 -53.232 -57.362 38.009 1 73.88 ? N6 ADP 501 C 1 HETATM 24 N N1 ADP . . . F 3 -54.82 -58.275 36.606 1 74.41 ? N1 ADP 501 C 1 HETATM 25 C C2 ADP . . . F 3 -55.409 -58.303 35.403 1 74.21 ? C2 ADP 501 C 1 HETATM 26 N N3 ADP . . . F 3 -55.152 -57.569 34.324 1 73.17 ? N3 ADP 501 C 1 HETATM 27 C C4 ADP . . . F 3 -54.151 -56.704 34.558 1 72.14 ? C4 ADP 501 C 1 # _model_server_stats.io_time_ms 151 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #