data_8BV1
#
_model_server_result.job_id            Bn_QdhYYhoU4TyMNaYExQw 
_model_server_result.datetime_utc      '2025-03-06 06:38:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":204}' 
#
_entry.id    8BV1 
#
_exptl.entry_id    8BV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BV1 
_cell.length_a            123.885 
_cell.length_b            123.885 
_cell.length_c            179.308 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M,N,O,P,Q,R,BA,HA 1 1 
B,I,S,T,U,CA 2 1 
C,L,V,DA,LA 3 1 
D,K,W,EA,KA 4 1 
E,H,X,Y,Z,FA,IA 5 1 
F,J,AA,GA,JA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G C ACE 1 N ACE 1 1_555 G N GLU 2 N GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 G C LYS 3 N LYS 3 1_555 G N ALN 4 N ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 G C ALN 4 N ALN 4 1_555 G N ALA 5 N ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale4 G C ALA 12 N ALA 12 1_555 G N NH2 13 N NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale5 H C ACE 1 G ACE 1 1_555 H N GLU 2 G GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 H C LYS 3 G LYS 3 1_555 H N ALN 4 G ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 H C ALN 4 G ALN 4 1_555 H N ALA 5 G ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 H C ALA 12 G ALA 12 1_555 H N NH2 13 G NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 I C ACE 1 K ACE 1 1_555 I N GLU 2 K GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 I C LYS 3 K LYS 3 1_555 I N ALN 4 K ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 I C ALN 4 K ALN 4 1_555 I N ALA 5 K ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale12 I C ALA 12 K ALA 12 1_555 I N NH2 13 K NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 J C ACE 1 H ACE 1 1_555 J N GLU 2 H GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 J C LYS 3 H LYS 3 1_555 J N ALN 4 H ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 J C ALN 4 H ALN 4 1_555 J N ALA 5 H ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale16 J C ALA 12 H ALA 12 1_555 J N NH2 13 H NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale17 K C ACE 1 L ACE 1 1_555 K N GLU 2 L GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale18 K C LYS 3 L LYS 3 1_555 K N ALN 4 L ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale19 K C ALN 4 L ALN 4 1_555 K N ALA 5 L ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale20 K C ALA 12 L ALA 12 1_555 K N NH2 13 L NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale21 L C ACE 1 I ACE 1 1_555 L N GLU 2 I GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale22 L C LYS 3 I LYS 3 1_555 L N ALN 4 I ALN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale23 L C ALN 4 I ALN 4 1_555 L N ALA 5 I ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale24 L C ALA 12 I ALA 12 1_555 L N NH2 13 I NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     8BV1 
_atom_sites.fract_transf_matrix[1][1]    0.008072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 GOL A 1 201 1 GOL GOL . 
N 3 GOL A 1 202 5 GOL GOL . 
O 3 GOL A 1 203 7 GOL GOL . 
P 3 GOL A 1 204 9 GOL GOL . 
Q 3 GOL A 1 205 10 GOL GOL . 
R 3 GOL A 1 206 11 GOL GOL . 
S 3 GOL B 1 201 12 GOL GOL . 
T 3 GOL B 1 202 13 GOL GOL . 
U 3 GOL B 1 203 15 GOL GOL . 
V 3 GOL C 1 201 2 GOL GOL . 
W 3 GOL D 1 201 8 GOL GOL . 
X 3 GOL E 1 201 3 GOL GOL . 
Y 3 GOL E 1 202 4 GOL GOL . 
Z 3 GOL E 1 203 14 GOL GOL . 
AA 3 GOL F 1 201 6 GOL GOL . 
BA 4 HOH A 1 301 13 HOH HOH . 
BA 4 HOH A 2 302 328 HOH HOH . 
BA 4 HOH A 3 303 49 HOH HOH . 
BA 4 HOH A 4 304 5 HOH HOH . 
BA 4 HOH A 5 305 3 HOH HOH . 
BA 4 HOH A 6 306 309 HOH HOH . 
BA 4 HOH A 7 307 23 HOH HOH . 
BA 4 HOH A 8 308 329 HOH HOH . 
BA 4 HOH A 9 309 8 HOH HOH . 
BA 4 HOH A 10 310 54 HOH HOH . 
BA 4 HOH A 11 311 72 HOH HOH . 
BA 4 HOH A 12 312 155 HOH HOH . 
BA 4 HOH A 13 313 9 HOH HOH . 
BA 4 HOH A 14 314 89 HOH HOH . 
BA 4 HOH A 15 315 11 HOH HOH . 
BA 4 HOH A 16 316 332 HOH HOH . 
BA 4 HOH A 17 317 26 HOH HOH . 
BA 4 HOH A 18 318 190 HOH HOH . 
BA 4 HOH A 19 319 183 HOH HOH . 
BA 4 HOH A 20 320 180 HOH HOH . 
BA 4 HOH A 21 321 289 HOH HOH . 
BA 4 HOH A 22 322 182 HOH HOH . 
BA 4 HOH A 23 323 284 HOH HOH . 
BA 4 HOH A 24 324 258 HOH HOH . 
BA 4 HOH A 25 325 71 HOH HOH . 
BA 4 HOH A 26 326 264 HOH HOH . 
BA 4 HOH A 27 327 273 HOH HOH . 
BA 4 HOH A 28 328 333 HOH HOH . 
BA 4 HOH A 29 329 265 HOH HOH . 
BA 4 HOH A 30 330 293 HOH HOH . 
CA 4 HOH B 1 301 324 HOH HOH . 
CA 4 HOH B 2 302 47 HOH HOH . 
CA 4 HOH B 3 303 280 HOH HOH . 
CA 4 HOH B 4 304 320 HOH HOH . 
CA 4 HOH B 5 305 12 HOH HOH . 
CA 4 HOH B 6 306 144 HOH HOH . 
CA 4 HOH B 7 307 44 HOH HOH . 
CA 4 HOH B 8 308 33 HOH HOH . 
CA 4 HOH B 9 309 272 HOH HOH . 
CA 4 HOH B 10 310 15 HOH HOH . 
CA 4 HOH B 11 311 99 HOH HOH . 
CA 4 HOH B 12 312 154 HOH HOH . 
CA 4 HOH B 13 313 97 HOH HOH . 
CA 4 HOH B 14 314 326 HOH HOH . 
CA 4 HOH B 15 315 334 HOH HOH . 
CA 4 HOH B 16 316 82 HOH HOH . 
CA 4 HOH B 17 317 106 HOH HOH . 
CA 4 HOH B 18 318 52 HOH HOH . 
CA 4 HOH B 19 319 281 HOH HOH . 
CA 4 HOH B 20 320 56 HOH HOH . 
CA 4 HOH B 21 321 312 HOH HOH . 
CA 4 HOH B 22 322 81 HOH HOH . 
CA 4 HOH B 23 323 317 HOH HOH . 
CA 4 HOH B 24 324 275 HOH HOH . 
CA 4 HOH B 25 325 316 HOH HOH . 
CA 4 HOH B 26 326 256 HOH HOH . 
CA 4 HOH B 27 327 108 HOH HOH . 
CA 4 HOH B 28 328 296 HOH HOH . 
CA 4 HOH B 29 329 304 HOH HOH . 
DA 4 HOH C 1 301 322 HOH HOH . 
DA 4 HOH C 2 302 29 HOH HOH . 
DA 4 HOH C 3 303 156 HOH HOH . 
DA 4 HOH C 4 304 46 HOH HOH . 
DA 4 HOH C 5 305 55 HOH HOH . 
DA 4 HOH C 6 306 169 HOH HOH . 
DA 4 HOH C 7 307 77 HOH HOH . 
DA 4 HOH C 8 308 64 HOH HOH . 
DA 4 HOH C 9 309 31 HOH HOH . 
DA 4 HOH C 10 310 194 HOH HOH . 
DA 4 HOH C 11 311 290 HOH HOH . 
DA 4 HOH C 12 312 220 HOH HOH . 
DA 4 HOH C 13 313 209 HOH HOH . 
DA 4 HOH C 14 314 299 HOH HOH . 
DA 4 HOH C 15 315 279 HOH HOH . 
DA 4 HOH C 16 316 298 HOH HOH . 
DA 4 HOH C 17 317 263 HOH HOH . 
DA 4 HOH C 18 318 38 HOH HOH . 
DA 4 HOH C 19 319 297 HOH HOH . 
EA 4 HOH D 1 301 22 HOH HOH . 
EA 4 HOH D 2 302 59 HOH HOH . 
EA 4 HOH D 3 303 14 HOH HOH . 
EA 4 HOH D 4 304 153 HOH HOH . 
EA 4 HOH D 5 305 135 HOH HOH . 
EA 4 HOH D 6 306 208 HOH HOH . 
EA 4 HOH D 7 307 168 HOH HOH . 
EA 4 HOH D 8 308 188 HOH HOH . 
EA 4 HOH D 9 309 211 HOH HOH . 
EA 4 HOH D 10 310 78 HOH HOH . 
EA 4 HOH D 11 311 291 HOH HOH . 
EA 4 HOH D 12 312 267 HOH HOH . 
EA 4 HOH D 13 313 139 HOH HOH . 
EA 4 HOH D 14 314 330 HOH HOH . 
EA 4 HOH D 15 315 287 HOH HOH . 
EA 4 HOH D 16 316 323 HOH HOH . 
EA 4 HOH D 17 317 255 HOH HOH . 
EA 4 HOH D 18 318 262 HOH HOH . 
EA 4 HOH D 19 319 327 HOH HOH . 
EA 4 HOH D 20 320 92 HOH HOH . 
EA 4 HOH D 21 321 270 HOH HOH . 
FA 4 HOH E 1 301 207 HOH HOH . 
FA 4 HOH E 2 302 30 HOH HOH . 
FA 4 HOH E 3 303 62 HOH HOH . 
FA 4 HOH E 4 304 27 HOH HOH . 
FA 4 HOH E 5 305 105 HOH HOH . 
FA 4 HOH E 6 306 61 HOH HOH . 
FA 4 HOH E 7 307 285 HOH HOH . 
FA 4 HOH E 8 308 43 HOH HOH . 
FA 4 HOH E 9 309 69 HOH HOH . 
FA 4 HOH E 10 310 161 HOH HOH . 
FA 4 HOH E 11 311 152 HOH HOH . 
FA 4 HOH E 12 312 157 HOH HOH . 
FA 4 HOH E 13 313 63 HOH HOH . 
FA 4 HOH E 14 314 300 HOH HOH . 
FA 4 HOH E 15 315 283 HOH HOH . 
FA 4 HOH E 16 316 261 HOH HOH . 
FA 4 HOH E 17 317 269 HOH HOH . 
FA 4 HOH E 18 318 303 HOH HOH . 
GA 4 HOH F 1 301 16 HOH HOH . 
GA 4 HOH F 2 302 85 HOH HOH . 
GA 4 HOH F 3 303 321 HOH HOH . 
GA 4 HOH F 4 304 185 HOH HOH . 
GA 4 HOH F 5 305 37 HOH HOH . 
GA 4 HOH F 6 306 311 HOH HOH . 
GA 4 HOH F 7 307 266 HOH HOH . 
GA 4 HOH F 8 308 268 HOH HOH . 
GA 4 HOH F 9 309 259 HOH HOH . 
GA 4 HOH F 10 310 307 HOH HOH . 
GA 4 HOH F 11 311 313 HOH HOH . 
GA 4 HOH F 12 312 278 HOH HOH . 
HA 4 HOH N 1 101 199 HOH HOH . 
HA 4 HOH N 2 102 42 HOH HOH . 
HA 4 HOH N 3 103 129 HOH HOH . 
HA 4 HOH N 4 104 115 HOH HOH . 
IA 4 HOH G 1 101 10 HOH HOH . 
IA 4 HOH G 2 102 217 HOH HOH . 
IA 4 HOH G 3 103 295 HOH HOH . 
IA 4 HOH G 4 104 286 HOH HOH . 
JA 4 HOH H 1 101 58 HOH HOH . 
KA 4 HOH L 1 101 127 HOH HOH . 
KA 4 HOH L 2 102 122 HOH HOH . 
KA 4 HOH L 3 103 41 HOH HOH . 
KA 4 HOH L 4 104 319 HOH HOH . 
LA 4 HOH I 1 101 175 HOH HOH . 
LA 4 HOH I 2 102 142 HOH HOH . 
LA 4 HOH I 3 103 36 HOH HOH . 
LA 4 HOH I 4 104 20 HOH HOH . 
LA 4 HOH I 5 105 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 3 -46.354 12.936 -23.32 1 108.99 ? C1 GOL 204 A 1 
HETATM 2 O O1 GOL . . . P 3 -45.917 12.082 -22.264 1 108.77 ? O1 GOL 204 A 1 
HETATM 3 C C2 GOL . . . P 3 -47.703 12.518 -23.882 1 109.18 ? C2 GOL 204 A 1 
HETATM 4 O O2 GOL . . . P 3 -47.546 11.501 -24.882 1 109.38 ? O2 GOL 204 A 1 
HETATM 5 C C3 GOL . . . P 3 -48.696 12.096 -22.812 1 108.63 ? C3 GOL 204 A 1 
HETATM 6 O O3 GOL . . . P 3 -50.046 12.187 -23.266 1 107.89 ? O3 GOL 204 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#