data_8BV3 # _model_server_result.job_id bUbUqHiAlKVGwkq603WswA _model_server_result.datetime_utc '2025-04-03 16:00:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 8BV3 # _exptl.entry_id 8BV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BV3 _cell.length_a 81.578 _cell.length_b 81.578 _cell.length_c 223.196 _cell.Z_PDB 15 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 Q N N ? 4 U N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 55 A THR 55 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 F O3G ANP . A ANP 301 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 F O1B ANP . A ANP 301 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 H MG MG . A MG 303 1_555 Y O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 B OG1 THR 55 B THR 55 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 B OG1 THR 122 B THR 122 1_555 K K K . B K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc7 I O3G ANP . B ANP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc8 I O1B ANP . B ANP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 L MG MG . B MG 304 1_555 Z O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 L MG MG . B MG 304 1_555 Z O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc11 L MG MG . B MG 304 1_555 Z O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 C OG1 THR 55 C THR 55 1_555 Q MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc13 C OG1 THR 122 C THR 122 1_555 O K K . C K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.372 ? metalc ? metalc14 M O3G ANP . C ANP 301 1_555 Q MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc15 M O1B ANP . C ANP 301 1_555 Q MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc16 Q MG MG . C MG 305 1_555 AA O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc17 D OG1 THR 55 D THR 55 1_555 U MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc18 R O3G ANP . D ANP 301 1_555 U MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc19 R O1B ANP . D ANP 301 1_555 U MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc20 S K K . D K 302 1_555 BA O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.461 ? metalc ? metalc21 T K K . D K 303 1_555 E OD2 ASP 156 E ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.438 ? metalc ? metalc22 U MG MG . D MG 304 1_555 BA O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc23 U MG MG . D MG 304 1_555 BA O HOH . D HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc24 U MG MG . D MG 304 1_555 BA O HOH . D HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc25 E OG1 THR 55 E THR 55 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc26 V O3G ANP . E ANP 301 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc27 V O1B ANP . E ANP 301 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc28 X MG MG . E MG 303 1_555 CA O HOH . E HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BV3 _atom_sites.fract_transf_matrix[1][1] 0.012258 _atom_sites.fract_transf_matrix[1][2] 0.007077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ANP A 1 301 243 ANP ANP . G 3 K A 1 302 7 K K . H 4 MG A 1 303 1 MG MG . I 2 ANP B 1 301 243 ANP ANP . J 3 K B 1 302 2 K K . K 3 K B 1 303 8 K K . L 4 MG B 1 304 2 MG MG . M 2 ANP C 1 301 243 ANP ANP . N 3 K C 1 302 3 K K . O 3 K C 1 303 5 K K . P 3 K C 1 304 10 K K . Q 4 MG C 1 305 3 MG MG . R 2 ANP D 1 301 243 ANP ANP . S 3 K D 1 302 4 K K . T 3 K D 1 303 6 K K . U 4 MG D 1 304 4 MG MG . V 2 ANP E 1 301 243 ANP ANP . W 3 K E 1 302 9 K K . X 4 MG E 1 303 5 MG MG . Y 5 HOH A 1 401 8 HOH HOH . Y 5 HOH A 2 402 83 HOH HOH . Y 5 HOH A 3 403 80 HOH HOH . Y 5 HOH A 4 404 28 HOH HOH . Y 5 HOH A 5 405 109 HOH HOH . Y 5 HOH A 6 406 123 HOH HOH . Y 5 HOH A 7 407 105 HOH HOH . Y 5 HOH A 8 408 29 HOH HOH . Y 5 HOH A 9 409 81 HOH HOH . Y 5 HOH A 10 410 87 HOH HOH . Y 5 HOH A 11 411 34 HOH HOH . Y 5 HOH A 12 412 26 HOH HOH . Y 5 HOH A 13 413 98 HOH HOH . Y 5 HOH A 14 414 82 HOH HOH . Z 5 HOH B 1 401 67 HOH HOH . Z 5 HOH B 2 402 70 HOH HOH . Z 5 HOH B 3 403 23 HOH HOH . Z 5 HOH B 4 404 110 HOH HOH . Z 5 HOH B 5 405 112 HOH HOH . Z 5 HOH B 6 406 14 HOH HOH . Z 5 HOH B 7 407 48 HOH HOH . Z 5 HOH B 8 408 111 HOH HOH . Z 5 HOH B 9 409 53 HOH HOH . Z 5 HOH B 10 410 56 HOH HOH . Z 5 HOH B 11 411 45 HOH HOH . Z 5 HOH B 12 412 36 HOH HOH . Z 5 HOH B 13 413 42 HOH HOH . Z 5 HOH B 14 414 1 HOH HOH . Z 5 HOH B 15 415 7 HOH HOH . Z 5 HOH B 16 416 46 HOH HOH . Z 5 HOH B 17 417 27 HOH HOH . Z 5 HOH B 18 418 79 HOH HOH . Z 5 HOH B 19 419 43 HOH HOH . Z 5 HOH B 20 420 101 HOH HOH . Z 5 HOH B 21 421 60 HOH HOH . Z 5 HOH B 22 422 58 HOH HOH . Z 5 HOH B 23 423 22 HOH HOH . Z 5 HOH B 24 424 61 HOH HOH . Z 5 HOH B 25 425 77 HOH HOH . Z 5 HOH B 26 426 78 HOH HOH . Z 5 HOH B 27 427 24 HOH HOH . Z 5 HOH B 28 428 50 HOH HOH . Z 5 HOH B 29 429 21 HOH HOH . AA 5 HOH C 1 401 94 HOH HOH . AA 5 HOH C 2 402 92 HOH HOH . AA 5 HOH C 3 403 71 HOH HOH . AA 5 HOH C 4 404 68 HOH HOH . AA 5 HOH C 5 405 69 HOH HOH . AA 5 HOH C 6 406 118 HOH HOH . AA 5 HOH C 7 407 63 HOH HOH . AA 5 HOH C 8 408 18 HOH HOH . AA 5 HOH C 9 409 66 HOH HOH . AA 5 HOH C 10 410 2 HOH HOH . AA 5 HOH C 11 411 84 HOH HOH . AA 5 HOH C 12 412 86 HOH HOH . AA 5 HOH C 13 413 99 HOH HOH . AA 5 HOH C 14 414 65 HOH HOH . AA 5 HOH C 15 415 62 HOH HOH . AA 5 HOH C 16 416 25 HOH HOH . AA 5 HOH C 17 417 11 HOH HOH . AA 5 HOH C 18 418 47 HOH HOH . AA 5 HOH C 19 419 90 HOH HOH . AA 5 HOH C 20 420 13 HOH HOH . AA 5 HOH C 21 421 15 HOH HOH . AA 5 HOH C 22 422 97 HOH HOH . AA 5 HOH C 23 423 33 HOH HOH . AA 5 HOH C 24 424 100 HOH HOH . AA 5 HOH C 25 425 6 HOH HOH . AA 5 HOH C 26 426 38 HOH HOH . AA 5 HOH C 27 427 51 HOH HOH . AA 5 HOH C 28 428 10 HOH HOH . AA 5 HOH C 29 429 5 HOH HOH . AA 5 HOH C 30 430 4 HOH HOH . AA 5 HOH C 31 431 106 HOH HOH . AA 5 HOH C 32 432 64 HOH HOH . AA 5 HOH C 33 433 103 HOH HOH . AA 5 HOH C 34 434 55 HOH HOH . AA 5 HOH C 35 435 49 HOH HOH . AA 5 HOH C 36 436 113 HOH HOH . BA 5 HOH D 1 401 122 HOH HOH . BA 5 HOH D 2 402 107 HOH HOH . BA 5 HOH D 3 403 115 HOH HOH . BA 5 HOH D 4 404 37 HOH HOH . BA 5 HOH D 5 405 72 HOH HOH . BA 5 HOH D 6 406 85 HOH HOH . BA 5 HOH D 7 407 31 HOH HOH . BA 5 HOH D 8 408 108 HOH HOH . BA 5 HOH D 9 409 59 HOH HOH . BA 5 HOH D 10 410 20 HOH HOH . BA 5 HOH D 11 411 114 HOH HOH . BA 5 HOH D 12 412 39 HOH HOH . BA 5 HOH D 13 413 91 HOH HOH . BA 5 HOH D 14 414 104 HOH HOH . BA 5 HOH D 15 415 40 HOH HOH . BA 5 HOH D 16 416 89 HOH HOH . BA 5 HOH D 17 417 30 HOH HOH . BA 5 HOH D 18 418 52 HOH HOH . BA 5 HOH D 19 419 32 HOH HOH . BA 5 HOH D 20 420 116 HOH HOH . BA 5 HOH D 21 421 88 HOH HOH . BA 5 HOH D 22 422 93 HOH HOH . BA 5 HOH D 23 423 9 HOH HOH . BA 5 HOH D 24 424 17 HOH HOH . BA 5 HOH D 25 425 16 HOH HOH . BA 5 HOH D 26 426 19 HOH HOH . BA 5 HOH D 27 427 120 HOH HOH . BA 5 HOH D 28 428 35 HOH HOH . BA 5 HOH D 29 429 95 HOH HOH . CA 5 HOH E 1 401 76 HOH HOH . CA 5 HOH E 2 402 3 HOH HOH . CA 5 HOH E 3 403 44 HOH HOH . CA 5 HOH E 4 404 73 HOH HOH . CA 5 HOH E 5 405 74 HOH HOH . CA 5 HOH E 6 406 102 HOH HOH . CA 5 HOH E 7 407 119 HOH HOH . CA 5 HOH E 8 408 12 HOH HOH . CA 5 HOH E 9 409 117 HOH HOH . CA 5 HOH E 10 410 75 HOH HOH . CA 5 HOH E 11 411 41 HOH HOH . CA 5 HOH E 12 412 96 HOH HOH . CA 5 HOH E 13 413 57 HOH HOH . CA 5 HOH E 14 414 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x -66.629 _atom_site.Cartn_y 6.47 _atom_site.Cartn_z 27.293 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #