data_8BVS # _model_server_result.job_id J-HLLnuJcKHDOp6pFQ7yLg _model_server_result.datetime_utc '2024-11-09 02:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8BVS # _exptl.entry_id 8BVS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 287.212 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYLPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BVS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 49 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 78 A CYS 78 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 28 B CYS 22 1_555 B SG CYS 102 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C9 H14 N5 O4 P' _chem_comp.formula_weight 287.212 _chem_comp.id TFO _chem_comp.mon_nstd_flag n _chem_comp.name '[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYLPHOSPHONIC ACID' _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms TENOFOVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP2 TFO sing 288 n n P OP1 TFO doub 289 n n P C9' TFO sing 290 n n P OP3 TFO sing 291 n n OP2 HOP2 TFO sing 292 n n C9' O9' TFO sing 293 n n C9' "H9'1" TFO sing 294 n n C9' "H9'2" TFO sing 295 n n O9' C7' TFO sing 296 n n C8' C7' TFO sing 297 n n C8' "H8'1" TFO sing 298 n n C8' "H8'2" TFO sing 299 n n C8' "H8'3" TFO sing 300 n n C7' C6' TFO sing 301 n n C7' H7' TFO sing 302 n n C6' N9 TFO sing 303 n n C6' "H6'1" TFO sing 304 n n C6' "H6'2" TFO sing 305 n n N9 C4 TFO sing 306 n y N9 C8 TFO sing 307 n y C4 N3 TFO sing 308 n y C4 C5 TFO doub 309 n y N3 C2 TFO doub 310 n y C2 N1 TFO sing 311 n y C2 H2 TFO sing 312 n n N1 C6 TFO doub 313 n y C6 N6 TFO sing 314 n n C6 C5 TFO sing 315 n y N6 HN61 TFO sing 316 n n N6 HN62 TFO sing 317 n n C5 N7 TFO sing 318 n y N7 C8 TFO doub 319 n y C8 H8 TFO sing 320 n n OP3 HOP3 TFO sing 321 n n # _atom_sites.entry_id 8BVS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TFO A 1 601 601 TFO LIG . D 4 CL A 1 602 602 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P TFO . . . C 3 129.114 122.735 117.945 1 100.56 ? P TFO 601 A 1 HETATM 2 O OP2 TFO . . . C 3 128.302 123.804 117.253 1 100.56 ? OP2 TFO 601 A 1 HETATM 3 O OP1 TFO . . . C 3 129.268 121.546 117.029 1 100.56 ? OP1 TFO 601 A 1 HETATM 4 C C9' TFO . . . C 3 130.794 123.416 118.368 1 100.56 ? C9' TFO 601 A 1 HETATM 5 O O9' TFO . . . C 3 131.317 122.646 119.413 1 100.56 ? O9' TFO 601 A 1 HETATM 6 C C8' TFO . . . C 3 132.025 124.472 120.767 1 100.56 ? C8' TFO 601 A 1 HETATM 7 C C7' TFO . . . C 3 131.157 123.215 120.682 1 100.56 ? C7' TFO 601 A 1 HETATM 8 C C6' TFO . . . C 3 131.543 122.158 121.716 1 100.56 ? C6' TFO 601 A 1 HETATM 9 N N9 TFO . . . C 3 130.71 120.982 121.548 1 100.56 ? N9 TFO 601 A 1 HETATM 10 C C4 TFO . . . C 3 129.383 120.926 121.743 1 100.56 ? C4 TFO 601 A 1 HETATM 11 N N3 TFO . . . C 3 128.469 121.831 122.12 1 100.56 ? N3 TFO 601 A 1 HETATM 12 C C2 TFO . . . C 3 127.2 121.489 122.232 1 100.56 ? C2 TFO 601 A 1 HETATM 13 N N1 TFO . . . C 3 126.787 120.256 121.981 1 100.56 ? N1 TFO 601 A 1 HETATM 14 C C6 TFO . . . C 3 127.64 119.316 121.606 1 100.56 ? C6 TFO 601 A 1 HETATM 15 N N6 TFO . . . C 3 127.174 117.971 121.334 1 100.56 ? N6 TFO 601 A 1 HETATM 16 C C5 TFO . . . C 3 129.002 119.629 121.471 1 100.56 ? C5 TFO 601 A 1 HETATM 17 N N7 TFO . . . C 3 130.11 118.957 121.124 1 100.56 ? N7 TFO 601 A 1 HETATM 18 C C8 TFO . . . C 3 131.136 119.789 121.175 1 100.56 ? C8 TFO 601 A 1 HETATM 19 O OP3 TFO . . . C 3 128.402 122.305 119.204 1 100.56 ? OP3 TFO 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #