data_8BVX # _model_server_result.job_id QO0zMyeleF4PRrf3h2PiNQ _model_server_result.datetime_utc '2025-06-19 17:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8BVX # _exptl.entry_id 8BVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(4-iodophenyl)-1~{H}-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BVX _cell.length_a 81.589 _cell.length_b 81.874 _cell.length_c 169.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,I 1 1 B,H,J 2 1 C,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 G NI NI . A NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 G NI NI . A NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 G NI NI . A NI 404 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 G NI NI . A NI 404 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 G NI NI . A NI 404 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 G NI NI . A NI 404 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C11 H8 I N5' _chem_comp.formula_weight 337.119 _chem_comp.id RYF _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(4-iodophenyl)-1~{H}-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N13 N12 RYF sing 286 n y N13 C14 RYF doub 287 n y N12 C11 RYF sing 288 n y C14 C15 RYF sing 289 n y C11 C15 RYF doub 290 n y C11 N10 RYF sing 291 n y C15 C07 RYF sing 292 n y N10 C09 RYF doub 293 n y C07 N06 RYF sing 294 n n C07 N08 RYF doub 295 n y N06 C05 RYF sing 296 n n C09 N08 RYF sing 297 n y C04 C05 RYF doub 298 n y C04 C03 RYF sing 299 n y C05 C16 RYF sing 300 n y C03 C02 RYF doub 301 n y C16 C17 RYF doub 302 n y C02 C17 RYF sing 303 n y C02 I01 RYF sing 304 n n N12 H1 RYF sing 305 n n C17 H2 RYF sing 306 n n C03 H3 RYF sing 307 n n C04 H4 RYF sing 308 n n N06 H5 RYF sing 309 n n C09 H6 RYF sing 310 n n C14 H7 RYF sing 311 n n C16 H8 RYF sing 312 n n # _atom_sites.entry_id 8BVX _atom_sites.fract_transf_matrix[1][1] 0.012257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RYF A 1 401 401 RYF LIG . E 3 EDO A 1 402 402 EDO EDO . F 3 EDO A 1 403 403 EDO EDO . G 4 NI A 1 404 1 NI NI . H 3 EDO B 1 401 401 EDO EDO . I 5 HOH A 1 501 93 HOH HOH . I 5 HOH A 2 502 60 HOH HOH . I 5 HOH A 3 503 16 HOH HOH . I 5 HOH A 4 504 86 HOH HOH . I 5 HOH A 5 505 55 HOH HOH . I 5 HOH A 6 506 92 HOH HOH . I 5 HOH A 7 507 7 HOH HOH . I 5 HOH A 8 508 4 HOH HOH . I 5 HOH A 9 509 65 HOH HOH . I 5 HOH A 10 510 56 HOH HOH . I 5 HOH A 11 511 79 HOH HOH . I 5 HOH A 12 512 11 HOH HOH . I 5 HOH A 13 513 68 HOH HOH . I 5 HOH A 14 514 38 HOH HOH . I 5 HOH A 15 515 81 HOH HOH . I 5 HOH A 16 516 12 HOH HOH . I 5 HOH A 17 517 28 HOH HOH . I 5 HOH A 18 518 54 HOH HOH . I 5 HOH A 19 519 108 HOH HOH . I 5 HOH A 20 520 69 HOH HOH . I 5 HOH A 21 521 3 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 21 HOH HOH . I 5 HOH A 24 524 78 HOH HOH . I 5 HOH A 25 525 59 HOH HOH . I 5 HOH A 26 526 107 HOH HOH . I 5 HOH A 27 527 9 HOH HOH . I 5 HOH A 28 528 64 HOH HOH . I 5 HOH A 29 529 91 HOH HOH . I 5 HOH A 30 530 77 HOH HOH . I 5 HOH A 31 531 106 HOH HOH . I 5 HOH A 32 532 87 HOH HOH . I 5 HOH A 33 533 17 HOH HOH . I 5 HOH A 34 534 10 HOH HOH . I 5 HOH A 35 535 57 HOH HOH . I 5 HOH A 36 536 84 HOH HOH . I 5 HOH A 37 537 5 HOH HOH . I 5 HOH A 38 538 51 HOH HOH . I 5 HOH A 39 539 67 HOH HOH . I 5 HOH A 40 540 23 HOH HOH . I 5 HOH A 41 541 40 HOH HOH . I 5 HOH A 42 542 112 HOH HOH . I 5 HOH A 43 543 82 HOH HOH . I 5 HOH A 44 544 83 HOH HOH . I 5 HOH A 45 545 70 HOH HOH . I 5 HOH A 46 546 6 HOH HOH . I 5 HOH A 47 547 61 HOH HOH . I 5 HOH A 48 548 53 HOH HOH . I 5 HOH A 49 549 13 HOH HOH . I 5 HOH A 50 550 58 HOH HOH . I 5 HOH A 51 551 32 HOH HOH . I 5 HOH A 52 552 29 HOH HOH . I 5 HOH A 53 553 20 HOH HOH . I 5 HOH A 54 554 85 HOH HOH . I 5 HOH A 55 555 8 HOH HOH . I 5 HOH A 56 556 2 HOH HOH . I 5 HOH A 57 557 27 HOH HOH . I 5 HOH A 58 558 33 HOH HOH . I 5 HOH A 59 559 18 HOH HOH . I 5 HOH A 60 560 52 HOH HOH . I 5 HOH A 61 561 30 HOH HOH . I 5 HOH A 62 562 109 HOH HOH . I 5 HOH A 63 563 80 HOH HOH . I 5 HOH A 64 564 105 HOH HOH . I 5 HOH A 65 565 31 HOH HOH . J 5 HOH B 1 501 26 HOH HOH . J 5 HOH B 2 502 46 HOH HOH . J 5 HOH B 3 503 24 HOH HOH . J 5 HOH B 4 504 73 HOH HOH . J 5 HOH B 5 505 39 HOH HOH . J 5 HOH B 6 506 36 HOH HOH . J 5 HOH B 7 507 47 HOH HOH . J 5 HOH B 8 508 66 HOH HOH . J 5 HOH B 9 509 42 HOH HOH . J 5 HOH B 10 510 111 HOH HOH . J 5 HOH B 11 511 48 HOH HOH . J 5 HOH B 12 512 72 HOH HOH . J 5 HOH B 13 513 74 HOH HOH . J 5 HOH B 14 514 50 HOH HOH . J 5 HOH B 15 515 25 HOH HOH . J 5 HOH B 16 516 37 HOH HOH . J 5 HOH B 17 517 49 HOH HOH . J 5 HOH B 18 518 71 HOH HOH . J 5 HOH B 19 519 89 HOH HOH . J 5 HOH B 20 520 88 HOH HOH . J 5 HOH B 21 521 44 HOH HOH . J 5 HOH B 22 522 45 HOH HOH . J 5 HOH B 23 523 75 HOH HOH . J 5 HOH B 24 524 90 HOH HOH . J 5 HOH B 25 525 43 HOH HOH . K 5 HOH C 1 401 103 HOH HOH . K 5 HOH C 2 402 97 HOH HOH . K 5 HOH C 3 403 100 HOH HOH . K 5 HOH C 4 404 99 HOH HOH . K 5 HOH C 5 405 98 HOH HOH . K 5 HOH C 6 406 95 HOH HOH . K 5 HOH C 7 407 113 HOH HOH . K 5 HOH C 8 408 102 HOH HOH . K 5 HOH C 9 409 101 HOH HOH . K 5 HOH C 10 410 110 HOH HOH . K 5 HOH C 11 411 96 HOH HOH . K 5 HOH C 12 412 104 HOH HOH . K 5 HOH C 13 413 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 RYF . . . D 2 -12.027 -13.823 10.427 1 66.71 0 N12 RYF 401 A 1 HETATM 2 C C15 RYF . . . D 2 -10.201 -14.816 11.153 1 67.76 0 C15 RYF 401 A 1 HETATM 3 C C17 RYF . . . D 2 -6.817 -17.631 14.872 1 102.1 0 C17 RYF 401 A 1 HETATM 4 I I01 RYF . . . D 2 -4.175 -18.106 16.306 1 136.3 0 I01 RYF 401 A 1 HETATM 5 C C02 RYF . . . D 2 -5.467 -17.322 14.835 1 106.91 0 C02 RYF 401 A 1 HETATM 6 C C03 RYF . . . D 2 -4.969 -16.5 13.835 1 100.85 0 C03 RYF 401 A 1 HETATM 7 C C04 RYF . . . D 2 -5.826 -15.988 12.875 1 94.17 0 C04 RYF 401 A 1 HETATM 8 C C05 RYF . . . D 2 -7.181 -16.292 12.905 1 88.67 0 C05 RYF 401 A 1 HETATM 9 N N06 RYF . . . D 2 -8.018 -15.718 11.863 1 78.83 0 N06 RYF 401 A 1 HETATM 10 C C07 RYF . . . D 2 -9.466 -15.852 11.782 1 71.04 0 C07 RYF 401 A 1 HETATM 11 N N08 RYF . . . D 2 -10.123 -16.914 12.248 1 67.39 0 N08 RYF 401 A 1 HETATM 12 C C09 RYF . . . D 2 -11.45 -17.003 12.146 1 67.22 0 C09 RYF 401 A 1 HETATM 13 N N10 RYF . . . D 2 -12.165 -16.047 11.567 1 67.01 0 N10 RYF 401 A 1 HETATM 14 C C11 RYF . . . D 2 -11.563 -14.935 11.058 1 66.31 0 C11 RYF 401 A 1 HETATM 15 N N13 RYF . . . D 2 -10.975 -13.01 10.124 1 66.72 0 N13 RYF 401 A 1 HETATM 16 C C14 RYF . . . D 2 -9.857 -13.577 10.548 1 67.16 0 C14 RYF 401 A 1 HETATM 17 C C16 RYF . . . D 2 -7.673 -17.12 13.91 1 95.09 0 C16 RYF 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #