data_8BVX # _model_server_result.job_id l0suihdHfeN7fFahGufheQ _model_server_result.datetime_utc '2025-06-19 17:54:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8BVX # _exptl.entry_id 8BVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BVX _cell.length_a 81.589 _cell.length_b 81.874 _cell.length_c 169.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,I 1 1 B,H,J 2 1 C,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 G NI NI . A NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 G NI NI . A NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 G NI NI . A NI 404 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 G NI NI . A NI 404 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 G NI NI . A NI 404 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 G NI NI . A NI 404 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8BVX _atom_sites.fract_transf_matrix[1][1] 0.012257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RYF A 1 401 401 RYF LIG . E 3 EDO A 1 402 402 EDO EDO . F 3 EDO A 1 403 403 EDO EDO . G 4 NI A 1 404 1 NI NI . H 3 EDO B 1 401 401 EDO EDO . I 5 HOH A 1 501 93 HOH HOH . I 5 HOH A 2 502 60 HOH HOH . I 5 HOH A 3 503 16 HOH HOH . I 5 HOH A 4 504 86 HOH HOH . I 5 HOH A 5 505 55 HOH HOH . I 5 HOH A 6 506 92 HOH HOH . I 5 HOH A 7 507 7 HOH HOH . I 5 HOH A 8 508 4 HOH HOH . I 5 HOH A 9 509 65 HOH HOH . I 5 HOH A 10 510 56 HOH HOH . I 5 HOH A 11 511 79 HOH HOH . I 5 HOH A 12 512 11 HOH HOH . I 5 HOH A 13 513 68 HOH HOH . I 5 HOH A 14 514 38 HOH HOH . I 5 HOH A 15 515 81 HOH HOH . I 5 HOH A 16 516 12 HOH HOH . I 5 HOH A 17 517 28 HOH HOH . I 5 HOH A 18 518 54 HOH HOH . I 5 HOH A 19 519 108 HOH HOH . I 5 HOH A 20 520 69 HOH HOH . I 5 HOH A 21 521 3 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 21 HOH HOH . I 5 HOH A 24 524 78 HOH HOH . I 5 HOH A 25 525 59 HOH HOH . I 5 HOH A 26 526 107 HOH HOH . I 5 HOH A 27 527 9 HOH HOH . I 5 HOH A 28 528 64 HOH HOH . I 5 HOH A 29 529 91 HOH HOH . I 5 HOH A 30 530 77 HOH HOH . I 5 HOH A 31 531 106 HOH HOH . I 5 HOH A 32 532 87 HOH HOH . I 5 HOH A 33 533 17 HOH HOH . I 5 HOH A 34 534 10 HOH HOH . I 5 HOH A 35 535 57 HOH HOH . I 5 HOH A 36 536 84 HOH HOH . I 5 HOH A 37 537 5 HOH HOH . I 5 HOH A 38 538 51 HOH HOH . I 5 HOH A 39 539 67 HOH HOH . I 5 HOH A 40 540 23 HOH HOH . I 5 HOH A 41 541 40 HOH HOH . I 5 HOH A 42 542 112 HOH HOH . I 5 HOH A 43 543 82 HOH HOH . I 5 HOH A 44 544 83 HOH HOH . I 5 HOH A 45 545 70 HOH HOH . I 5 HOH A 46 546 6 HOH HOH . I 5 HOH A 47 547 61 HOH HOH . I 5 HOH A 48 548 53 HOH HOH . I 5 HOH A 49 549 13 HOH HOH . I 5 HOH A 50 550 58 HOH HOH . I 5 HOH A 51 551 32 HOH HOH . I 5 HOH A 52 552 29 HOH HOH . I 5 HOH A 53 553 20 HOH HOH . I 5 HOH A 54 554 85 HOH HOH . I 5 HOH A 55 555 8 HOH HOH . I 5 HOH A 56 556 2 HOH HOH . I 5 HOH A 57 557 27 HOH HOH . I 5 HOH A 58 558 33 HOH HOH . I 5 HOH A 59 559 18 HOH HOH . I 5 HOH A 60 560 52 HOH HOH . I 5 HOH A 61 561 30 HOH HOH . I 5 HOH A 62 562 109 HOH HOH . I 5 HOH A 63 563 80 HOH HOH . I 5 HOH A 64 564 105 HOH HOH . I 5 HOH A 65 565 31 HOH HOH . J 5 HOH B 1 501 26 HOH HOH . J 5 HOH B 2 502 46 HOH HOH . J 5 HOH B 3 503 24 HOH HOH . J 5 HOH B 4 504 73 HOH HOH . J 5 HOH B 5 505 39 HOH HOH . J 5 HOH B 6 506 36 HOH HOH . J 5 HOH B 7 507 47 HOH HOH . J 5 HOH B 8 508 66 HOH HOH . J 5 HOH B 9 509 42 HOH HOH . J 5 HOH B 10 510 111 HOH HOH . J 5 HOH B 11 511 48 HOH HOH . J 5 HOH B 12 512 72 HOH HOH . J 5 HOH B 13 513 74 HOH HOH . J 5 HOH B 14 514 50 HOH HOH . J 5 HOH B 15 515 25 HOH HOH . J 5 HOH B 16 516 37 HOH HOH . J 5 HOH B 17 517 49 HOH HOH . J 5 HOH B 18 518 71 HOH HOH . J 5 HOH B 19 519 89 HOH HOH . J 5 HOH B 20 520 88 HOH HOH . J 5 HOH B 21 521 44 HOH HOH . J 5 HOH B 22 522 45 HOH HOH . J 5 HOH B 23 523 75 HOH HOH . J 5 HOH B 24 524 90 HOH HOH . J 5 HOH B 25 525 43 HOH HOH . K 5 HOH C 1 401 103 HOH HOH . K 5 HOH C 2 402 97 HOH HOH . K 5 HOH C 3 403 100 HOH HOH . K 5 HOH C 4 404 99 HOH HOH . K 5 HOH C 5 405 98 HOH HOH . K 5 HOH C 6 406 95 HOH HOH . K 5 HOH C 7 407 113 HOH HOH . K 5 HOH C 8 408 102 HOH HOH . K 5 HOH C 9 409 101 HOH HOH . K 5 HOH C 10 410 110 HOH HOH . K 5 HOH C 11 411 96 HOH HOH . K 5 HOH C 12 412 104 HOH HOH . K 5 HOH C 13 413 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -19.288 -26.589 7.609 1 72.43 0 C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . E 3 -18.065 -27.14 7.165 1 72.37 0 O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . E 3 -20.425 -26.845 6.69 1 72.02 0 C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . E 3 -20.027 -27.326 5.419 1 71.02 0 O2 EDO 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #