data_8BW4 # _model_server_result.job_id Tk-HJ2HDUA4SsZoCh0-3Uw _model_server_result.datetime_utc '2024-10-21 02:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 8BW4 # _exptl.entry_id 8BW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.944 _cell.angle_gamma 90 _cell.entry_id 8BW4 _cell.length_a 81.789 _cell.length_b 27.009 _cell.length_c 55.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 F N3 O3 S' _chem_comp.formula_weight 377.433 _chem_comp.id Y3S _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 S1 Y3S sing 376 n y C11 C12 Y3S doub 377 n y S1 C10 Y3S sing 378 n y C12 C13 Y3S sing 379 n y C10 C13 Y3S doub 380 n y C10 C9 Y3S sing 381 n n C13 F1 Y3S sing 382 n n C9 O3 Y3S doub 383 n n C9 N3 Y3S sing 384 n n C8 N3 Y3S sing 385 n n C8 C7 Y3S sing 386 n n N3 C14 Y3S sing 387 n n C7 N2 Y3S sing 388 n n C14 C15 Y3S sing 389 n n N2 C15 Y3S sing 390 n n N2 C6 Y3S sing 391 n n C15 C16 Y3S sing 392 n n N1 C6 Y3S sing 393 n n N1 C5 Y3S sing 394 n n C6 O2 Y3S doub 395 n n C5 C17 Y3S doub 396 n y C5 C4 Y3S sing 397 n y C17 C18 Y3S sing 398 n y C4 C3 Y3S doub 399 n y C18 C2 Y3S doub 400 n y C3 C2 Y3S sing 401 n y C2 O1 Y3S sing 402 n n O1 C1 Y3S sing 403 n n N1 H1 Y3S sing 404 n n C4 H2 Y3S sing 405 n n C7 H3 Y3S sing 406 n n C7 H4 Y3S sing 407 n n C8 H5 Y3S sing 408 n n C8 H6 Y3S sing 409 n n C15 H7 Y3S sing 410 n n C17 H8 Y3S sing 411 n n C1 H9 Y3S sing 412 n n C1 H10 Y3S sing 413 n n C1 H11 Y3S sing 414 n n C11 H12 Y3S sing 415 n n C12 H13 Y3S sing 416 n n C14 H14 Y3S sing 417 n n C14 H15 Y3S sing 418 n n C16 H16 Y3S sing 419 n n C16 H17 Y3S sing 420 n n C16 H18 Y3S sing 421 n n C18 H19 Y3S sing 422 n n C3 H20 Y3S sing 423 n n # _atom_sites.entry_id 8BW4 _atom_sites.fract_transf_matrix[1][1] 0.012227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002144 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y3S A 1 1501 1501 Y3S LIG . C 3 HOH A 1 1601 118 HOH HOH . C 3 HOH A 2 1602 84 HOH HOH . C 3 HOH A 3 1603 87 HOH HOH . C 3 HOH A 4 1604 58 HOH HOH . C 3 HOH A 5 1605 17 HOH HOH . C 3 HOH A 6 1606 68 HOH HOH . C 3 HOH A 7 1607 55 HOH HOH . C 3 HOH A 8 1608 86 HOH HOH . C 3 HOH A 9 1609 103 HOH HOH . C 3 HOH A 10 1610 90 HOH HOH . C 3 HOH A 11 1611 143 HOH HOH . C 3 HOH A 12 1612 39 HOH HOH . C 3 HOH A 13 1613 95 HOH HOH . C 3 HOH A 14 1614 114 HOH HOH . C 3 HOH A 15 1615 53 HOH HOH . C 3 HOH A 16 1616 113 HOH HOH . C 3 HOH A 17 1617 70 HOH HOH . C 3 HOH A 18 1618 82 HOH HOH . C 3 HOH A 19 1619 6 HOH HOH . C 3 HOH A 20 1620 11 HOH HOH . C 3 HOH A 21 1621 1 HOH HOH . C 3 HOH A 22 1622 33 HOH HOH . C 3 HOH A 23 1623 111 HOH HOH . C 3 HOH A 24 1624 4 HOH HOH . C 3 HOH A 25 1625 76 HOH HOH . C 3 HOH A 26 1626 38 HOH HOH . C 3 HOH A 27 1627 3 HOH HOH . C 3 HOH A 28 1628 100 HOH HOH . C 3 HOH A 29 1629 85 HOH HOH . C 3 HOH A 30 1630 72 HOH HOH . C 3 HOH A 31 1631 77 HOH HOH . C 3 HOH A 32 1632 110 HOH HOH . C 3 HOH A 33 1633 28 HOH HOH . C 3 HOH A 34 1634 24 HOH HOH . C 3 HOH A 35 1635 71 HOH HOH . C 3 HOH A 36 1636 60 HOH HOH . C 3 HOH A 37 1637 104 HOH HOH . C 3 HOH A 38 1638 20 HOH HOH . C 3 HOH A 39 1639 37 HOH HOH . C 3 HOH A 40 1640 74 HOH HOH . C 3 HOH A 41 1641 36 HOH HOH . C 3 HOH A 42 1642 22 HOH HOH . C 3 HOH A 43 1643 7 HOH HOH . C 3 HOH A 44 1644 10 HOH HOH . C 3 HOH A 45 1645 19 HOH HOH . C 3 HOH A 46 1646 34 HOH HOH . C 3 HOH A 47 1647 9 HOH HOH . C 3 HOH A 48 1648 5 HOH HOH . C 3 HOH A 49 1649 23 HOH HOH . C 3 HOH A 50 1650 155 HOH HOH . C 3 HOH A 51 1651 31 HOH HOH . C 3 HOH A 52 1652 51 HOH HOH . C 3 HOH A 53 1653 88 HOH HOH . C 3 HOH A 54 1654 29 HOH HOH . C 3 HOH A 55 1655 35 HOH HOH . C 3 HOH A 56 1656 13 HOH HOH . C 3 HOH A 57 1657 45 HOH HOH . C 3 HOH A 58 1658 62 HOH HOH . C 3 HOH A 59 1659 14 HOH HOH . C 3 HOH A 60 1660 15 HOH HOH . C 3 HOH A 61 1661 44 HOH HOH . C 3 HOH A 62 1662 138 HOH HOH . C 3 HOH A 63 1663 25 HOH HOH . C 3 HOH A 64 1664 101 HOH HOH . C 3 HOH A 65 1665 54 HOH HOH . C 3 HOH A 66 1666 27 HOH HOH . C 3 HOH A 67 1667 48 HOH HOH . C 3 HOH A 68 1668 21 HOH HOH . C 3 HOH A 69 1669 57 HOH HOH . C 3 HOH A 70 1670 42 HOH HOH . C 3 HOH A 71 1671 18 HOH HOH . C 3 HOH A 72 1672 94 HOH HOH . C 3 HOH A 73 1673 56 HOH HOH . C 3 HOH A 74 1674 2 HOH HOH . C 3 HOH A 75 1675 102 HOH HOH . C 3 HOH A 76 1676 73 HOH HOH . C 3 HOH A 77 1677 8 HOH HOH . C 3 HOH A 78 1678 16 HOH HOH . C 3 HOH A 79 1679 93 HOH HOH . C 3 HOH A 80 1680 89 HOH HOH . C 3 HOH A 81 1681 32 HOH HOH . C 3 HOH A 82 1682 65 HOH HOH . C 3 HOH A 83 1683 79 HOH HOH . C 3 HOH A 84 1684 12 HOH HOH . C 3 HOH A 85 1685 66 HOH HOH . C 3 HOH A 86 1686 30 HOH HOH . C 3 HOH A 87 1687 40 HOH HOH . C 3 HOH A 88 1688 49 HOH HOH . C 3 HOH A 89 1689 149 HOH HOH . C 3 HOH A 90 1690 141 HOH HOH . C 3 HOH A 91 1691 63 HOH HOH . C 3 HOH A 92 1692 132 HOH HOH . C 3 HOH A 93 1693 64 HOH HOH . C 3 HOH A 94 1694 145 HOH HOH . C 3 HOH A 95 1695 130 HOH HOH . C 3 HOH A 96 1696 133 HOH HOH . C 3 HOH A 97 1697 116 HOH HOH . C 3 HOH A 98 1698 99 HOH HOH . C 3 HOH A 99 1699 98 HOH HOH . C 3 HOH A 100 1700 142 HOH HOH . C 3 HOH A 101 1701 136 HOH HOH . C 3 HOH A 102 1702 80 HOH HOH . C 3 HOH A 103 1703 108 HOH HOH . C 3 HOH A 104 1704 97 HOH HOH . C 3 HOH A 105 1705 69 HOH HOH . C 3 HOH A 106 1706 75 HOH HOH . C 3 HOH A 107 1707 107 HOH HOH . C 3 HOH A 108 1708 41 HOH HOH . C 3 HOH A 109 1709 134 HOH HOH . C 3 HOH A 110 1710 139 HOH HOH . C 3 HOH A 111 1711 109 HOH HOH . C 3 HOH A 112 1712 129 HOH HOH . C 3 HOH A 113 1713 43 HOH HOH . C 3 HOH A 114 1714 121 HOH HOH . C 3 HOH A 115 1715 47 HOH HOH . C 3 HOH A 116 1716 92 HOH HOH . C 3 HOH A 117 1717 148 HOH HOH . C 3 HOH A 118 1718 124 HOH HOH . C 3 HOH A 119 1719 140 HOH HOH . C 3 HOH A 120 1720 150 HOH HOH . C 3 HOH A 121 1721 52 HOH HOH . C 3 HOH A 122 1722 115 HOH HOH . C 3 HOH A 123 1723 61 HOH HOH . C 3 HOH A 124 1724 67 HOH HOH . C 3 HOH A 125 1725 120 HOH HOH . C 3 HOH A 126 1726 81 HOH HOH . C 3 HOH A 127 1727 147 HOH HOH . C 3 HOH A 128 1728 122 HOH HOH . C 3 HOH A 129 1729 152 HOH HOH . C 3 HOH A 130 1730 83 HOH HOH . C 3 HOH A 131 1731 135 HOH HOH . C 3 HOH A 132 1732 59 HOH HOH . C 3 HOH A 133 1733 119 HOH HOH . C 3 HOH A 134 1734 146 HOH HOH . C 3 HOH A 135 1735 117 HOH HOH . C 3 HOH A 136 1736 153 HOH HOH . C 3 HOH A 137 1737 157 HOH HOH . C 3 HOH A 138 1738 137 HOH HOH . C 3 HOH A 139 1739 123 HOH HOH . C 3 HOH A 140 1740 125 HOH HOH . C 3 HOH A 141 1741 112 HOH HOH . C 3 HOH A 142 1742 78 HOH HOH . C 3 HOH A 143 1743 91 HOH HOH . C 3 HOH A 144 1744 154 HOH HOH . C 3 HOH A 145 1745 144 HOH HOH . C 3 HOH A 146 1746 128 HOH HOH . C 3 HOH A 147 1747 105 HOH HOH . C 3 HOH A 148 1748 151 HOH HOH . C 3 HOH A 149 1749 127 HOH HOH . C 3 HOH A 150 1750 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 Y3S . . . B 2 -20.237 17.005 27.963 1 63.31 0 N1 Y3S 1501 A 1 HETATM 2 N N3 Y3S . . . B 2 -18.57 13.375 25.086 1 35.77 0 N3 Y3S 1501 A 1 HETATM 3 C C4 Y3S . . . B 2 -21.928 17.526 29.616 1 86.99 0 C4 Y3S 1501 A 1 HETATM 4 C C5 Y3S . . . B 2 -20.839 17.919 28.852 1 80.89 0 C5 Y3S 1501 A 1 HETATM 5 C C6 Y3S . . . B 2 -20.286 15.632 28.048 1 52.52 0 C6 Y3S 1501 A 1 HETATM 6 C C7 Y3S . . . B 2 -18.769 15.589 26.062 1 33.82 0 C7 Y3S 1501 A 1 HETATM 7 C C8 Y3S . . . B 2 -18.896 14.774 24.811 1 29.86 0 C8 Y3S 1501 A 1 HETATM 8 C C10 Y3S . . . B 2 -16.485 13.334 23.71 1 30.24 0 C10 Y3S 1501 A 1 HETATM 9 C C13 Y3S . . . B 2 -15.753 14.603 23.959 1 28.54 0 C13 Y3S 1501 A 1 HETATM 10 C C15 Y3S . . . B 2 -19.246 13.518 27.395 1 39.45 0 C15 Y3S 1501 A 1 HETATM 11 C C17 Y3S . . . B 2 -20.368 19.227 28.95 1 96.2 0 C17 Y3S 1501 A 1 HETATM 12 C C1 Y3S . . . B 2 -24.116 20.408 31.572 1 106.31 0 C1 Y3S 1501 A 1 HETATM 13 C C11 Y3S . . . B 2 -14.566 13.85 22.029 1 27.88 0 C11 Y3S 1501 A 1 HETATM 14 C C12 Y3S . . . B 2 -14.772 14.826 22.936 1 23.48 0 C12 Y3S 1501 A 1 HETATM 15 C C14 Y3S . . . B 2 -19.441 12.781 26.09 1 31.01 0 C14 Y3S 1501 A 1 HETATM 16 C C16 Y3S . . . B 2 -17.865 13.271 27.982 1 41.06 0 C16 Y3S 1501 A 1 HETATM 17 C C18 Y3S . . . B 2 -20.972 20.123 29.817 1 106.66 0 C18 Y3S 1501 A 1 HETATM 18 C C2 Y3S . . . B 2 -22.057 19.716 30.582 1 101.35 0 C2 Y3S 1501 A 1 HETATM 19 C C3 Y3S . . . B 2 -22.532 18.416 30.48 1 93.11 0 C3 Y3S 1501 A 1 HETATM 20 C C9 Y3S . . . B 2 -17.595 12.679 24.482 1 30.13 0 C9 Y3S 1501 A 1 HETATM 21 F F1 Y3S . . . B 2 -15.97 15.408 25.016 1 32.46 0 F1 Y3S 1501 A 1 HETATM 22 N N2 Y3S . . . B 2 -19.492 14.956 27.174 1 41.44 0 N2 Y3S 1501 A 1 HETATM 23 O O1 Y3S . . . B 2 -22.691 20.571 31.443 1 115.85 0 O1 Y3S 1501 A 1 HETATM 24 O O2 Y3S . . . B 2 -20.996 15.041 28.871 1 38.61 0 O2 Y3S 1501 A 1 HETATM 25 O O3 Y3S . . . B 2 -17.563 11.451 24.566 1 34.33 0 O3 Y3S 1501 A 1 HETATM 26 S S1 Y3S . . . B 2 -15.812 12.496 22.211 1 32.88 0 S1 Y3S 1501 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #