data_8BWU # _model_server_result.job_id '_TVSjMyMKdmUL9UNRVPcgA' _model_server_result.datetime_utc '2024-11-21 09:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8BWU # _exptl.entry_id 8BWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BWU _cell.length_a 109.309 _cell.length_b 109.309 _cell.length_c 48.651 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 233 A CYS 452 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A SG CYS 258 A CYS 477 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A SG CYS 265 A CYS 484 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A ND1 HIS 268 A HIS 487 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C16 H20 N6 O5 S' _chem_comp.formula_weight 408.432 _chem_comp.id 6NR _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' 6NR sing 1 n n NN CN 6NR trip 2 n n N6 C6 6NR sing 3 n n CN C7 6NR sing 4 n n C7 C5 6NR sing 5 n y C7 C8 6NR doub 6 n y C6 C5 6NR doub 7 n y C6 N1 6NR sing 8 n y C2' C1' 6NR sing 9 n n C2' C3' 6NR sing 10 n n C5 C4 6NR sing 11 n y C8 N9 6NR sing 12 n y N1 C2 6NR doub 13 n y C4 N9 6NR sing 14 n y C4 N3 6NR doub 15 n y N9 C1' 6NR sing 16 n n C2 N3 6NR sing 17 n y O3' C3' 6NR sing 18 n n C1' O4' 6NR sing 19 n n C3' C4' 6NR sing 20 n n O4' C4' 6NR sing 21 n n C4' C5' 6NR sing 22 n n C5' SD 6NR sing 23 n n SD CG 6NR sing 24 n n CB CG 6NR sing 25 n n CB CA 6NR sing 26 n n CA N 6NR sing 27 n n CA C 6NR sing 28 n n C OXT 6NR doub 29 n n C O 6NR sing 30 n n C8 H1 6NR sing 31 n n O H2 6NR sing 32 n n CA H3 6NR sing 33 n n N H4 6NR sing 34 n n N H5 6NR sing 35 n n CB H7 6NR sing 36 n n CB H8 6NR sing 37 n n CG H9 6NR sing 38 n n CG H10 6NR sing 39 n n C5' H11 6NR sing 40 n n C5' H12 6NR sing 41 n n C4' H13 6NR sing 42 n n C3' H14 6NR sing 43 n n O3' H15 6NR sing 44 n n C2' H16 6NR sing 45 n n O2' H17 6NR sing 46 n n C1' H18 6NR sing 47 n n C2 H19 6NR sing 48 n n N6 H20 6NR sing 49 n n N6 H21 6NR sing 50 n n # _atom_sites.entry_id 8BWU _atom_sites.fract_transf_matrix[1][1] 0.009148 _atom_sites.fract_transf_matrix[1][2] 0.005282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6NR A 1 601 601 6NR 6NR . C 3 ZN A 1 602 602 ZN ZN . D 4 HOH A 1 701 11 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 26 HOH HOH . D 4 HOH A 4 704 9 HOH HOH . D 4 HOH A 5 705 12 HOH HOH . D 4 HOH A 6 706 21 HOH HOH . D 4 HOH A 7 707 8 HOH HOH . D 4 HOH A 8 708 14 HOH HOH . D 4 HOH A 9 709 17 HOH HOH . D 4 HOH A 10 710 23 HOH HOH . D 4 HOH A 11 711 1 HOH HOH . D 4 HOH A 12 712 6 HOH HOH . D 4 HOH A 13 713 3 HOH HOH . D 4 HOH A 14 714 10 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 25 HOH HOH . D 4 HOH A 17 717 13 HOH HOH . D 4 HOH A 18 718 24 HOH HOH . D 4 HOH A 19 719 4 HOH HOH . D 4 HOH A 20 720 5 HOH HOH . D 4 HOH A 21 721 20 HOH HOH . D 4 HOH A 22 722 18 HOH HOH . D 4 HOH A 23 723 7 HOH HOH . D 4 HOH A 24 724 19 HOH HOH . D 4 HOH A 25 725 22 HOH HOH . D 4 HOH A 26 726 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6NR . . . B 2 40.959 33.811 20.711 1 30.75 ? C4 6NR 601 A 1 HETATM 2 C C5 6NR . . . B 2 39.79 34.013 21.47 1 32.76 ? C5 6NR 601 A 1 HETATM 3 C C6 6NR . . . B 2 39.562 35.34 21.919 1 37.19 ? C6 6NR 601 A 1 HETATM 4 N N1 6NR . . . B 2 40.466 36.292 21.602 1 35.06 ? N1 6NR 601 A 1 HETATM 5 C C7 6NR . . . B 2 39.139 32.736 21.557 1 36.92 ? C7 6NR 601 A 1 HETATM 6 C C8 6NR . . . B 2 39.916 31.844 20.864 1 35.57 ? C8 6NR 601 A 1 HETATM 7 N N3 6NR . . . B 2 41.859 34.749 20.393 1 45.04 ? N3 6NR 601 A 1 HETATM 8 O OXT 6NR . . . B 2 43.188 28.894 11.643 1 43.99 ? OXT 6NR 601 A 1 HETATM 9 C C 6NR . . . B 2 42.673 29.988 11.742 1 46.63 ? C 6NR 601 A 1 HETATM 10 O O 6NR . . . B 2 42.092 30.622 10.758 1 55.84 -1 O 6NR 601 A 1 HETATM 11 C CA 6NR . . . B 2 42.641 30.774 13.045 1 44.43 ? CA 6NR 601 A 1 HETATM 12 N N 6NR . . . B 2 42.045 32.105 12.839 1 36.93 ? N 6NR 601 A 1 HETATM 13 C CB 6NR . . . B 2 41.866 30.016 14.125 1 42.52 ? CB 6NR 601 A 1 HETATM 14 C CG 6NR . . . B 2 42.732 29.045 14.916 1 40.36 ? CG 6NR 601 A 1 HETATM 15 S SD 6NR . . . B 2 41.886 28.181 16.271 1 43.04 ? SD 6NR 601 A 1 HETATM 16 C C5' 6NR . . . B 2 41.049 29.526 17.157 1 31.33 ? C5' 6NR 601 A 1 HETATM 17 C C4' 6NR . . . B 2 42.148 30.428 17.688 1 48.24 ? C4' 6NR 601 A 1 HETATM 18 C C3' 6NR . . . B 2 43.063 29.857 18.775 1 51.52 ? C3' 6NR 601 A 1 HETATM 19 O O3' 6NR . . . B 2 44.423 30.195 18.525 1 38.84 ? O3' 6NR 601 A 1 HETATM 20 C C2' 6NR . . . B 2 42.538 30.511 20.056 1 38.63 ? C2' 6NR 601 A 1 HETATM 21 O O2' 6NR . . . B 2 43.574 30.691 21.015 1 37.65 ? O2' 6NR 601 A 1 HETATM 22 O O4' 6NR . . . B 2 41.536 31.615 18.245 1 47.17 ? O4' 6NR 601 A 1 HETATM 23 C C1' 6NR . . . B 2 42.062 31.863 19.533 1 48.13 ? C1' 6NR 601 A 1 HETATM 24 N N9 6NR . . . B 2 41.021 32.484 20.344 1 35.02 ? N9 6NR 601 A 1 HETATM 25 C C2 6NR . . . B 2 41.532 35.947 20.878 1 35.24 ? C2 6NR 601 A 1 HETATM 26 C CN 6NR . . . B 2 37.916 32.399 22.234 1 54.79 ? CN 6NR 601 A 1 HETATM 27 N NN 6NR . . . B 2 36.95 32.079 22.759 1 59.47 ? NN 6NR 601 A 1 HETATM 28 N N6 6NR . . . B 2 38.492 35.703 22.634 1 33.14 ? N6 6NR 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #