data_8BXH # _model_server_result.job_id 2GpHfK4L0jMT2hNCRNikGw _model_server_result.datetime_utc '2024-11-22 00:47:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 8BXH # _exptl.entry_id 8BXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.51 _cell.angle_gamma 90 _cell.entry_id 8BXH _cell.length_a 107.36 _cell.length_b 68.926 _cell.length_c 49.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 190 A GLU 1006 1_555 A N PTR 191 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C PTR 191 A PTR 1007 1_555 A N PTR 192 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C PTR 192 A PTR 1008 1_555 A N LYS 193 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 293 n n C1 C3 MLI sing 294 n n C1 H11 MLI sing 295 n n C1 H12 MLI sing 296 n n C2 O6 MLI doub 297 n n C2 O7 MLI sing 298 n n C3 O8 MLI doub 299 n n C3 O9 MLI sing 300 n n # _atom_sites.entry_id 8BXH _atom_sites.fract_transf_matrix[1][1] 0.009314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00156 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C87 A 1 1201 1201 C87 C87 . C 3 MLI A 1 1202 1202 MLI MLI . D 4 HOH A 1 1301 372 HOH HOH . D 4 HOH A 2 1302 331 HOH HOH . D 4 HOH A 3 1303 51 HOH HOH . D 4 HOH A 4 1304 292 HOH HOH . D 4 HOH A 5 1305 229 HOH HOH . D 4 HOH A 6 1306 121 HOH HOH . D 4 HOH A 7 1307 400 HOH HOH . D 4 HOH A 8 1308 381 HOH HOH . D 4 HOH A 9 1309 406 HOH HOH . D 4 HOH A 10 1310 140 HOH HOH . D 4 HOH A 11 1311 148 HOH HOH . D 4 HOH A 12 1312 10 HOH HOH . D 4 HOH A 13 1313 395 HOH HOH . D 4 HOH A 14 1314 84 HOH HOH . D 4 HOH A 15 1315 138 HOH HOH . D 4 HOH A 16 1316 47 HOH HOH . D 4 HOH A 17 1317 157 HOH HOH . D 4 HOH A 18 1318 269 HOH HOH . D 4 HOH A 19 1319 207 HOH HOH . D 4 HOH A 20 1320 115 HOH HOH . D 4 HOH A 21 1321 224 HOH HOH . D 4 HOH A 22 1322 126 HOH HOH . D 4 HOH A 23 1323 388 HOH HOH . D 4 HOH A 24 1324 129 HOH HOH . D 4 HOH A 25 1325 106 HOH HOH . D 4 HOH A 26 1326 85 HOH HOH . D 4 HOH A 27 1327 377 HOH HOH . D 4 HOH A 28 1328 36 HOH HOH . D 4 HOH A 29 1329 181 HOH HOH . D 4 HOH A 30 1330 54 HOH HOH . D 4 HOH A 31 1331 67 HOH HOH . D 4 HOH A 32 1332 24 HOH HOH . D 4 HOH A 33 1333 156 HOH HOH . D 4 HOH A 34 1334 280 HOH HOH . D 4 HOH A 35 1335 97 HOH HOH . D 4 HOH A 36 1336 228 HOH HOH . D 4 HOH A 37 1337 45 HOH HOH . D 4 HOH A 38 1338 105 HOH HOH . D 4 HOH A 39 1339 147 HOH HOH . D 4 HOH A 40 1340 124 HOH HOH . D 4 HOH A 41 1341 216 HOH HOH . D 4 HOH A 42 1342 69 HOH HOH . D 4 HOH A 43 1343 142 HOH HOH . D 4 HOH A 44 1344 234 HOH HOH . D 4 HOH A 45 1345 39 HOH HOH . D 4 HOH A 46 1346 53 HOH HOH . D 4 HOH A 47 1347 391 HOH HOH . D 4 HOH A 48 1348 18 HOH HOH . D 4 HOH A 49 1349 382 HOH HOH . D 4 HOH A 50 1350 122 HOH HOH . D 4 HOH A 51 1351 62 HOH HOH . D 4 HOH A 52 1352 87 HOH HOH . D 4 HOH A 53 1353 168 HOH HOH . D 4 HOH A 54 1354 197 HOH HOH . D 4 HOH A 55 1355 5 HOH HOH . D 4 HOH A 56 1356 59 HOH HOH . D 4 HOH A 57 1357 373 HOH HOH . D 4 HOH A 58 1358 107 HOH HOH . D 4 HOH A 59 1359 26 HOH HOH . D 4 HOH A 60 1360 29 HOH HOH . D 4 HOH A 61 1361 101 HOH HOH . D 4 HOH A 62 1362 91 HOH HOH . D 4 HOH A 63 1363 357 HOH HOH . D 4 HOH A 64 1364 79 HOH HOH . D 4 HOH A 65 1365 95 HOH HOH . D 4 HOH A 66 1366 33 HOH HOH . D 4 HOH A 67 1367 104 HOH HOH . D 4 HOH A 68 1368 15 HOH HOH . D 4 HOH A 69 1369 116 HOH HOH . D 4 HOH A 70 1370 30 HOH HOH . D 4 HOH A 71 1371 8 HOH HOH . D 4 HOH A 72 1372 68 HOH HOH . D 4 HOH A 73 1373 28 HOH HOH . D 4 HOH A 74 1374 41 HOH HOH . D 4 HOH A 75 1375 64 HOH HOH . D 4 HOH A 76 1376 341 HOH HOH . D 4 HOH A 77 1377 139 HOH HOH . D 4 HOH A 78 1378 35 HOH HOH . D 4 HOH A 79 1379 393 HOH HOH . D 4 HOH A 80 1380 184 HOH HOH . D 4 HOH A 81 1381 13 HOH HOH . D 4 HOH A 82 1382 412 HOH HOH . D 4 HOH A 83 1383 411 HOH HOH . D 4 HOH A 84 1384 55 HOH HOH . D 4 HOH A 85 1385 27 HOH HOH . D 4 HOH A 86 1386 12 HOH HOH . D 4 HOH A 87 1387 58 HOH HOH . D 4 HOH A 88 1388 6 HOH HOH . D 4 HOH A 89 1389 81 HOH HOH . D 4 HOH A 90 1390 198 HOH HOH . D 4 HOH A 91 1391 70 HOH HOH . D 4 HOH A 92 1392 56 HOH HOH . D 4 HOH A 93 1393 11 HOH HOH . D 4 HOH A 94 1394 100 HOH HOH . D 4 HOH A 95 1395 185 HOH HOH . D 4 HOH A 96 1396 43 HOH HOH . D 4 HOH A 97 1397 3 HOH HOH . D 4 HOH A 98 1398 88 HOH HOH . D 4 HOH A 99 1399 96 HOH HOH . D 4 HOH A 100 1400 80 HOH HOH . D 4 HOH A 101 1401 71 HOH HOH . D 4 HOH A 102 1402 170 HOH HOH . D 4 HOH A 103 1403 76 HOH HOH . D 4 HOH A 104 1404 94 HOH HOH . D 4 HOH A 105 1405 1 HOH HOH . D 4 HOH A 106 1406 414 HOH HOH . D 4 HOH A 107 1407 89 HOH HOH . D 4 HOH A 108 1408 14 HOH HOH . D 4 HOH A 109 1409 144 HOH HOH . D 4 HOH A 110 1410 110 HOH HOH . D 4 HOH A 111 1411 385 HOH HOH . D 4 HOH A 112 1412 386 HOH HOH . D 4 HOH A 113 1413 166 HOH HOH . D 4 HOH A 114 1414 407 HOH HOH . D 4 HOH A 115 1415 161 HOH HOH . D 4 HOH A 116 1416 135 HOH HOH . D 4 HOH A 117 1417 63 HOH HOH . D 4 HOH A 118 1418 17 HOH HOH . D 4 HOH A 119 1419 50 HOH HOH . D 4 HOH A 120 1420 7 HOH HOH . D 4 HOH A 121 1421 149 HOH HOH . D 4 HOH A 122 1422 103 HOH HOH . D 4 HOH A 123 1423 214 HOH HOH . D 4 HOH A 124 1424 418 HOH HOH . D 4 HOH A 125 1425 190 HOH HOH . D 4 HOH A 126 1426 201 HOH HOH . D 4 HOH A 127 1427 77 HOH HOH . D 4 HOH A 128 1428 205 HOH HOH . D 4 HOH A 129 1429 417 HOH HOH . D 4 HOH A 130 1430 383 HOH HOH . D 4 HOH A 131 1431 61 HOH HOH . D 4 HOH A 132 1432 34 HOH HOH . D 4 HOH A 133 1433 415 HOH HOH . D 4 HOH A 134 1434 16 HOH HOH . D 4 HOH A 135 1435 160 HOH HOH . D 4 HOH A 136 1436 416 HOH HOH . D 4 HOH A 137 1437 405 HOH HOH . D 4 HOH A 138 1438 4 HOH HOH . D 4 HOH A 139 1439 408 HOH HOH . D 4 HOH A 140 1440 171 HOH HOH . D 4 HOH A 141 1441 60 HOH HOH . D 4 HOH A 142 1442 114 HOH HOH . D 4 HOH A 143 1443 93 HOH HOH . D 4 HOH A 144 1444 74 HOH HOH . D 4 HOH A 145 1445 23 HOH HOH . D 4 HOH A 146 1446 134 HOH HOH . D 4 HOH A 147 1447 338 HOH HOH . D 4 HOH A 148 1448 174 HOH HOH . D 4 HOH A 149 1449 108 HOH HOH . D 4 HOH A 150 1450 403 HOH HOH . D 4 HOH A 151 1451 57 HOH HOH . D 4 HOH A 152 1452 145 HOH HOH . D 4 HOH A 153 1453 37 HOH HOH . D 4 HOH A 154 1454 32 HOH HOH . D 4 HOH A 155 1455 298 HOH HOH . D 4 HOH A 156 1456 225 HOH HOH . D 4 HOH A 157 1457 131 HOH HOH . D 4 HOH A 158 1458 73 HOH HOH . D 4 HOH A 159 1459 137 HOH HOH . D 4 HOH A 160 1460 378 HOH HOH . D 4 HOH A 161 1461 376 HOH HOH . D 4 HOH A 162 1462 120 HOH HOH . D 4 HOH A 163 1463 178 HOH HOH . D 4 HOH A 164 1464 83 HOH HOH . D 4 HOH A 165 1465 186 HOH HOH . D 4 HOH A 166 1466 187 HOH HOH . D 4 HOH A 167 1467 253 HOH HOH . D 4 HOH A 168 1468 44 HOH HOH . D 4 HOH A 169 1469 180 HOH HOH . D 4 HOH A 170 1470 194 HOH HOH . D 4 HOH A 171 1471 136 HOH HOH . D 4 HOH A 172 1472 25 HOH HOH . D 4 HOH A 173 1473 123 HOH HOH . D 4 HOH A 174 1474 401 HOH HOH . D 4 HOH A 175 1475 21 HOH HOH . D 4 HOH A 176 1476 78 HOH HOH . D 4 HOH A 177 1477 219 HOH HOH . D 4 HOH A 178 1478 102 HOH HOH . D 4 HOH A 179 1479 314 HOH HOH . D 4 HOH A 180 1480 42 HOH HOH . D 4 HOH A 181 1481 254 HOH HOH . D 4 HOH A 182 1482 238 HOH HOH . D 4 HOH A 183 1483 48 HOH HOH . D 4 HOH A 184 1484 158 HOH HOH . D 4 HOH A 185 1485 49 HOH HOH . D 4 HOH A 186 1486 130 HOH HOH . D 4 HOH A 187 1487 179 HOH HOH . D 4 HOH A 188 1488 208 HOH HOH . D 4 HOH A 189 1489 199 HOH HOH . D 4 HOH A 190 1490 279 HOH HOH . D 4 HOH A 191 1491 348 HOH HOH . D 4 HOH A 192 1492 176 HOH HOH . D 4 HOH A 193 1493 322 HOH HOH . D 4 HOH A 194 1494 31 HOH HOH . D 4 HOH A 195 1495 390 HOH HOH . D 4 HOH A 196 1496 272 HOH HOH . D 4 HOH A 197 1497 75 HOH HOH . D 4 HOH A 198 1498 347 HOH HOH . D 4 HOH A 199 1499 389 HOH HOH . D 4 HOH A 200 1500 379 HOH HOH . D 4 HOH A 201 1501 371 HOH HOH . D 4 HOH A 202 1502 350 HOH HOH . D 4 HOH A 203 1503 52 HOH HOH . D 4 HOH A 204 1504 9 HOH HOH . D 4 HOH A 205 1505 355 HOH HOH . D 4 HOH A 206 1506 290 HOH HOH . D 4 HOH A 207 1507 112 HOH HOH . D 4 HOH A 208 1508 215 HOH HOH . D 4 HOH A 209 1509 66 HOH HOH . D 4 HOH A 210 1510 349 HOH HOH . D 4 HOH A 211 1511 159 HOH HOH . D 4 HOH A 212 1512 410 HOH HOH . D 4 HOH A 213 1513 172 HOH HOH . D 4 HOH A 214 1514 374 HOH HOH . D 4 HOH A 215 1515 251 HOH HOH . D 4 HOH A 216 1516 141 HOH HOH . D 4 HOH A 217 1517 392 HOH HOH . D 4 HOH A 218 1518 404 HOH HOH . D 4 HOH A 219 1519 206 HOH HOH . D 4 HOH A 220 1520 212 HOH HOH . D 4 HOH A 221 1521 98 HOH HOH . D 4 HOH A 222 1522 308 HOH HOH . D 4 HOH A 223 1523 92 HOH HOH . D 4 HOH A 224 1524 358 HOH HOH . D 4 HOH A 225 1525 20 HOH HOH . D 4 HOH A 226 1526 398 HOH HOH . D 4 HOH A 227 1527 152 HOH HOH . D 4 HOH A 228 1528 19 HOH HOH . D 4 HOH A 229 1529 384 HOH HOH . D 4 HOH A 230 1530 256 HOH HOH . D 4 HOH A 231 1531 394 HOH HOH . D 4 HOH A 232 1532 155 HOH HOH . D 4 HOH A 233 1533 283 HOH HOH . D 4 HOH A 234 1534 125 HOH HOH . D 4 HOH A 235 1535 169 HOH HOH . D 4 HOH A 236 1536 258 HOH HOH . D 4 HOH A 237 1537 413 HOH HOH . D 4 HOH A 238 1538 399 HOH HOH . D 4 HOH A 239 1539 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 3 -25.135 -0.247 7.616 1 43.96 ? C1 MLI 1202 A 1 HETATM 2 C C2 MLI . . . C 3 -26.641 0.015 7.605 1 42.23 ? C2 MLI 1202 A 1 HETATM 3 C C3 MLI . . . C 3 -24.908 -1.524 8.431 1 48.92 ? C3 MLI 1202 A 1 HETATM 4 O O6 MLI . . . C 3 -27.391 -0.762 6.964 1 48.54 ? O6 MLI 1202 A 1 HETATM 5 O O7 MLI . . . C 3 -27.146 0.982 8.238 1 38.39 ? O7 MLI 1202 A 1 HETATM 6 O O8 MLI . . . C 3 -24.081 -2.409 8.074 1 49.87 ? O8 MLI 1202 A 1 HETATM 7 O O9 MLI . . . C 3 -25.577 -1.688 9.484 1 52.08 ? O9 MLI 1202 A 1 HETATM 8 H H11 MLI . . . C 3 -24.617 0.585 8.077 1 52.75 ? H11 MLI 1202 A 1 HETATM 9 H H12 MLI . . . C 3 -24.774 -0.382 6.604 1 52.75 ? H12 MLI 1202 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #