data_8BXU # _model_server_result.job_id 1Q6buRpKdUjziLCqoUbNyA _model_server_result.datetime_utc '2025-01-11 20:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8BXU # _exptl.entry_id 8BXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.49 _cell.angle_gamma 90 _cell.entry_id 8BXU _cell.length_a 33.943 _cell.length_b 35.509 _cell.length_c 55.063 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 AAA CYS 18 1_555 A SG CYS 49 AAA CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 45 AAA CYS 45 1_555 A SG CYS 102 AAA CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 91 AAA CYS 91 1_555 A SG CYS 111 AAA CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 A OE1 GLU 86 AAA GLU 86 1_555 E NA NA . AAA NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A OH TYR 115 AAA TYR 115 1_555 E NA NA . AAA NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 E NA NA . AAA NA 204 1_555 G O HOH . AAA HOH 407 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 252 n n C1 H11 MPD sing 253 n n C1 H12 MPD sing 254 n n C1 H13 MPD sing 255 n n C2 O2 MPD sing 256 n n C2 CM MPD sing 257 n n C2 C3 MPD sing 258 n n O2 HO2 MPD sing 259 n n CM HM1 MPD sing 260 n n CM HM2 MPD sing 261 n n CM HM3 MPD sing 262 n n C3 C4 MPD sing 263 n n C3 H31 MPD sing 264 n n C3 H32 MPD sing 265 n n C4 O4 MPD sing 266 n n C4 C5 MPD sing 267 n n C4 H4 MPD sing 268 n n O4 HO4 MPD sing 269 n n C5 H51 MPD sing 270 n n C5 H52 MPD sing 271 n n C5 H53 MPD sing 272 n n # _atom_sites.entry_id 8BXU _atom_sites.fract_transf_matrix[1][1] 0.029461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005455 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD AAA 1 201 1 MPD MPD . C 2 MPD AAA 1 202 2 MPD MPD . D 2 MPD AAA 1 203 3 MPD MPD . E 3 NA AAA 1 204 2 NA NA . F 4 ETX AAA 1 205 1 ETX PEU . G 5 HOH AAA 1 301 111 HOH HOH . G 5 HOH AAA 2 302 95 HOH HOH . G 5 HOH AAA 3 303 89 HOH HOH . G 5 HOH AAA 4 304 49 HOH HOH . G 5 HOH AAA 5 305 76 HOH HOH . G 5 HOH AAA 6 306 126 HOH HOH . G 5 HOH AAA 7 307 71 HOH HOH . G 5 HOH AAA 8 308 66 HOH HOH . G 5 HOH AAA 9 309 68 HOH HOH . G 5 HOH AAA 10 310 98 HOH HOH . G 5 HOH AAA 11 311 92 HOH HOH . G 5 HOH AAA 12 312 124 HOH HOH . G 5 HOH AAA 13 313 83 HOH HOH . G 5 HOH AAA 14 314 64 HOH HOH . G 5 HOH AAA 15 315 59 HOH HOH . G 5 HOH AAA 16 316 84 HOH HOH . G 5 HOH AAA 17 317 88 HOH HOH . G 5 HOH AAA 18 318 40 HOH HOH . G 5 HOH AAA 19 319 16 HOH HOH . G 5 HOH AAA 20 320 30 HOH HOH . G 5 HOH AAA 21 321 6 HOH HOH . G 5 HOH AAA 22 322 100 HOH HOH . G 5 HOH AAA 23 323 35 HOH HOH . G 5 HOH AAA 24 324 4 HOH HOH . G 5 HOH AAA 25 325 14 HOH HOH . G 5 HOH AAA 26 326 104 HOH HOH . G 5 HOH AAA 27 327 82 HOH HOH . G 5 HOH AAA 28 328 70 HOH HOH . G 5 HOH AAA 29 329 125 HOH HOH . G 5 HOH AAA 30 330 2 HOH HOH . G 5 HOH AAA 31 331 105 HOH HOH . G 5 HOH AAA 32 332 29 HOH HOH . G 5 HOH AAA 33 333 56 HOH HOH . G 5 HOH AAA 34 334 46 HOH HOH . G 5 HOH AAA 35 335 101 HOH HOH . G 5 HOH AAA 36 336 55 HOH HOH . G 5 HOH AAA 37 337 103 HOH HOH . G 5 HOH AAA 38 338 8 HOH HOH . G 5 HOH AAA 39 339 17 HOH HOH . G 5 HOH AAA 40 340 51 HOH HOH . G 5 HOH AAA 41 341 19 HOH HOH . G 5 HOH AAA 42 342 115 HOH HOH . G 5 HOH AAA 43 343 42 HOH HOH . G 5 HOH AAA 44 344 22 HOH HOH . G 5 HOH AAA 45 345 44 HOH HOH . G 5 HOH AAA 46 346 33 HOH HOH . G 5 HOH AAA 47 347 23 HOH HOH . G 5 HOH AAA 48 348 10 HOH HOH . G 5 HOH AAA 49 349 12 HOH HOH . G 5 HOH AAA 50 350 11 HOH HOH . G 5 HOH AAA 51 351 93 HOH HOH . G 5 HOH AAA 52 352 25 HOH HOH . G 5 HOH AAA 53 353 110 HOH HOH . G 5 HOH AAA 54 354 26 HOH HOH . G 5 HOH AAA 55 355 63 HOH HOH . G 5 HOH AAA 56 356 107 HOH HOH . G 5 HOH AAA 57 357 57 HOH HOH . G 5 HOH AAA 58 358 77 HOH HOH . G 5 HOH AAA 59 359 43 HOH HOH . G 5 HOH AAA 60 360 1 HOH HOH . G 5 HOH AAA 61 361 74 HOH HOH . G 5 HOH AAA 62 362 73 HOH HOH . G 5 HOH AAA 63 363 13 HOH HOH . G 5 HOH AAA 64 364 86 HOH HOH . G 5 HOH AAA 65 365 54 HOH HOH . G 5 HOH AAA 66 366 41 HOH HOH . G 5 HOH AAA 67 367 5 HOH HOH . G 5 HOH AAA 68 368 117 HOH HOH . G 5 HOH AAA 69 369 61 HOH HOH . G 5 HOH AAA 70 370 20 HOH HOH . G 5 HOH AAA 71 371 62 HOH HOH . G 5 HOH AAA 72 372 47 HOH HOH . G 5 HOH AAA 73 373 21 HOH HOH . G 5 HOH AAA 74 374 102 HOH HOH . G 5 HOH AAA 75 375 24 HOH HOH . G 5 HOH AAA 76 376 58 HOH HOH . G 5 HOH AAA 77 377 67 HOH HOH . G 5 HOH AAA 78 378 81 HOH HOH . G 5 HOH AAA 79 379 65 HOH HOH . G 5 HOH AAA 80 380 15 HOH HOH . G 5 HOH AAA 81 381 28 HOH HOH . G 5 HOH AAA 82 382 108 HOH HOH . G 5 HOH AAA 83 383 85 HOH HOH . G 5 HOH AAA 84 384 53 HOH HOH . G 5 HOH AAA 85 385 31 HOH HOH . G 5 HOH AAA 86 386 38 HOH HOH . G 5 HOH AAA 87 387 87 HOH HOH . G 5 HOH AAA 88 388 32 HOH HOH . G 5 HOH AAA 89 389 72 HOH HOH . G 5 HOH AAA 90 390 99 HOH HOH . G 5 HOH AAA 91 391 36 HOH HOH . G 5 HOH AAA 92 392 27 HOH HOH . G 5 HOH AAA 93 393 39 HOH HOH . G 5 HOH AAA 94 394 97 HOH HOH . G 5 HOH AAA 95 395 114 HOH HOH . G 5 HOH AAA 96 396 123 HOH HOH . G 5 HOH AAA 97 397 48 HOH HOH . G 5 HOH AAA 98 398 90 HOH HOH . G 5 HOH AAA 99 399 109 HOH HOH . G 5 HOH AAA 100 400 18 HOH HOH . G 5 HOH AAA 101 401 34 HOH HOH . G 5 HOH AAA 102 402 122 HOH HOH . G 5 HOH AAA 103 403 7 HOH HOH . G 5 HOH AAA 104 404 9 HOH HOH . G 5 HOH AAA 105 405 112 HOH HOH . G 5 HOH AAA 106 406 45 HOH HOH . G 5 HOH AAA 107 407 94 HOH HOH . G 5 HOH AAA 108 408 78 HOH HOH . G 5 HOH AAA 109 409 3 HOH HOH . G 5 HOH AAA 110 410 116 HOH HOH . G 5 HOH AAA 111 411 118 HOH HOH . G 5 HOH AAA 112 412 113 HOH HOH . G 5 HOH AAA 113 413 50 HOH HOH . G 5 HOH AAA 114 414 96 HOH HOH . G 5 HOH AAA 115 415 60 HOH HOH . G 5 HOH AAA 116 416 69 HOH HOH . G 5 HOH AAA 117 417 37 HOH HOH . G 5 HOH AAA 118 418 120 HOH HOH . G 5 HOH AAA 119 419 91 HOH HOH . G 5 HOH AAA 120 420 119 HOH HOH . G 5 HOH AAA 121 421 75 HOH HOH . G 5 HOH AAA 122 422 52 HOH HOH . G 5 HOH AAA 123 423 80 HOH HOH . G 5 HOH AAA 124 424 79 HOH HOH . G 5 HOH AAA 125 425 106 HOH HOH . G 5 HOH AAA 126 426 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 6.96 5.617 6.476 1 36.56 ? C1 MPD 203 AAA 1 HETATM 2 C C2 MPD . . . D 2 7.271 4.591 7.552 1 35.94 ? C2 MPD 203 AAA 1 HETATM 3 O O2 MPD . . . D 2 8.568 4.004 7.285 1 33.63 ? O2 MPD 203 AAA 1 HETATM 4 C CM MPD . . . D 2 6.326 3.407 7.443 1 29.16 ? CM MPD 203 AAA 1 HETATM 5 C C3 MPD . . . D 2 7.233 5.233 8.944 1 35.42 ? C3 MPD 203 AAA 1 HETATM 6 C C4 MPD . . . D 2 7.957 6.557 9.123 1 39.17 ? C4 MPD 203 AAA 1 HETATM 7 O O4 MPD . . . D 2 7.067 7.671 8.778 1 36.55 ? O4 MPD 203 AAA 1 HETATM 8 C C5 MPD . . . D 2 8.493 6.713 10.539 1 38.73 ? C5 MPD 203 AAA 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #