data_8BYJ
#
_model_server_result.job_id            ikbeTytPSlifYCHDyreSzQ 
_model_server_result.datetime_utc      '2024-11-22 11:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8byj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    8BYJ 
#
_exptl.entry_id    8BYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.15 
_cell.angle_gamma         90 
_cell.entry_id            8BYJ 
_cell.length_a            78.784 
_cell.length_b            75.958 
_cell.length_c            114.905 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,I,J,M 1 1 
B,C,F,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 116 A CYS 133 1_555 A SG CYS 124 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 A SG CYS 327 A CYS 344 1_555 A SG CYS 344 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf3 A SG CYS 513 A CYS 530 1_555 A SG CYS 525 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 B SG CYS 116 B CYS 133 1_555 B SG CYS 124 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 327 B CYS 344 1_555 B SG CYS 344 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 513 B CYS 530 1_555 B SG CYS 525 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 C SG CYS 2 C CYS 1 1_555 H C11 LFI . C LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? 
covale ? covale2 C SG CYS 7 C CYS 6 1_555 H C12 LFI . C LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? 
covale ? covale3 C SG CYS 16 C CYS 15 1_555 H C10 LFI . C LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale4 C C ALA 17 C ALA 16 1_555 C N NH2 18 C NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.231 ? 
covale ? covale5 D SG CYS 2 D CYS 1 1_555 I C10 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? 
covale ? covale6 D SG CYS 7 D CYS 6 1_555 I C11 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
covale ? covale7 D SG CYS 16 D CYS 15 1_555 I C12 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale8 D C ALA 17 D ALA 16 1_555 D N NH2 18 D NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? 
metalc ? metalc1 A NE2 HIS 357 A HIS 374 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 A NE2 HIS 361 A HIS 378 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc3 A OE2 GLU 385 A GLU 402 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc4 E ZN ZN . A ZN 701 1_555 J O HOH . A HOH 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc5 B OH TYR 235 B TYR 252 1_555 G NA NA . B NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc6 B NE2 HIS 357 B HIS 374 1_555 F ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc7 B NE2 HIS 361 B HIS 378 1_555 F ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc8 B OE1 GLU 385 B GLU 402 1_555 F ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc9 F ZN ZN . B ZN 701 1_555 K O HOH . B HOH 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8BYJ 
_atom_sites.fract_transf_matrix[1][1]    0.012693 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002733 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008902 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 701 1 ZN ZN . 
F 3 ZN B 1 701 2 ZN ZN . 
G 4 NA B 1 702 1 NA NA . 
H 5 LFI C 1 101 101 LFI TAT . 
I 5 LFI D 1 101 101 LFI TAT . 
J 6 HOH A 1 801 66 HOH HOH . 
J 6 HOH A 2 802 52 HOH HOH . 
J 6 HOH A 3 803 45 HOH HOH . 
J 6 HOH A 4 804 83 HOH HOH . 
J 6 HOH A 5 805 85 HOH HOH . 
J 6 HOH A 6 806 16 HOH HOH . 
J 6 HOH A 7 807 76 HOH HOH . 
J 6 HOH A 8 808 69 HOH HOH . 
J 6 HOH A 9 809 103 HOH HOH . 
J 6 HOH A 10 810 11 HOH HOH . 
J 6 HOH A 11 811 47 HOH HOH . 
J 6 HOH A 12 812 60 HOH HOH . 
J 6 HOH A 13 813 38 HOH HOH . 
J 6 HOH A 14 814 56 HOH HOH . 
J 6 HOH A 15 815 20 HOH HOH . 
J 6 HOH A 16 816 9 HOH HOH . 
J 6 HOH A 17 817 71 HOH HOH . 
J 6 HOH A 18 818 25 HOH HOH . 
J 6 HOH A 19 819 41 HOH HOH . 
J 6 HOH A 20 820 70 HOH HOH . 
J 6 HOH A 21 821 58 HOH HOH . 
J 6 HOH A 22 822 115 HOH HOH . 
J 6 HOH A 23 823 113 HOH HOH . 
J 6 HOH A 24 824 75 HOH HOH . 
J 6 HOH A 25 825 37 HOH HOH . 
J 6 HOH A 26 826 23 HOH HOH . 
J 6 HOH A 27 827 43 HOH HOH . 
J 6 HOH A 28 828 21 HOH HOH . 
J 6 HOH A 29 829 65 HOH HOH . 
J 6 HOH A 30 830 50 HOH HOH . 
J 6 HOH A 31 831 73 HOH HOH . 
J 6 HOH A 32 832 63 HOH HOH . 
J 6 HOH A 33 833 114 HOH HOH . 
J 6 HOH A 34 834 80 HOH HOH . 
J 6 HOH A 35 835 4 HOH HOH . 
J 6 HOH A 36 836 110 HOH HOH . 
J 6 HOH A 37 837 82 HOH HOH . 
J 6 HOH A 38 838 8 HOH HOH . 
J 6 HOH A 39 839 40 HOH HOH . 
J 6 HOH A 40 840 13 HOH HOH . 
J 6 HOH A 41 841 99 HOH HOH . 
J 6 HOH A 42 842 79 HOH HOH . 
J 6 HOH A 43 843 7 HOH HOH . 
J 6 HOH A 44 844 100 HOH HOH . 
J 6 HOH A 45 845 57 HOH HOH . 
J 6 HOH A 46 846 125 HOH HOH . 
J 6 HOH A 47 847 22 HOH HOH . 
J 6 HOH A 48 848 122 HOH HOH . 
J 6 HOH A 49 849 93 HOH HOH . 
J 6 HOH A 50 850 78 HOH HOH . 
J 6 HOH A 51 851 124 HOH HOH . 
J 6 HOH A 52 852 88 HOH HOH . 
J 6 HOH A 53 853 129 HOH HOH . 
J 6 HOH A 54 854 96 HOH HOH . 
J 6 HOH A 55 855 94 HOH HOH . 
J 6 HOH A 56 856 111 HOH HOH . 
J 6 HOH A 57 857 17 HOH HOH . 
J 6 HOH A 58 858 118 HOH HOH . 
J 6 HOH A 59 859 102 HOH HOH . 
J 6 HOH A 60 860 68 HOH HOH . 
J 6 HOH A 61 861 87 HOH HOH . 
J 6 HOH A 62 862 15 HOH HOH . 
J 6 HOH A 63 863 12 HOH HOH . 
J 6 HOH A 64 864 10 HOH HOH . 
J 6 HOH A 65 865 32 HOH HOH . 
J 6 HOH A 66 866 72 HOH HOH . 
J 6 HOH A 67 867 39 HOH HOH . 
J 6 HOH A 68 868 5 HOH HOH . 
J 6 HOH A 69 869 97 HOH HOH . 
J 6 HOH A 70 870 1 HOH HOH . 
J 6 HOH A 71 871 127 HOH HOH . 
J 6 HOH A 72 872 101 HOH HOH . 
J 6 HOH A 73 873 130 HOH HOH . 
J 6 HOH A 74 874 90 HOH HOH . 
J 6 HOH A 75 875 123 HOH HOH . 
J 6 HOH A 76 876 120 HOH HOH . 
K 6 HOH B 1 801 19 HOH HOH . 
K 6 HOH B 2 802 24 HOH HOH . 
K 6 HOH B 3 803 109 HOH HOH . 
K 6 HOH B 4 804 51 HOH HOH . 
K 6 HOH B 5 805 62 HOH HOH . 
K 6 HOH B 6 806 53 HOH HOH . 
K 6 HOH B 7 807 61 HOH HOH . 
K 6 HOH B 8 808 48 HOH HOH . 
K 6 HOH B 9 809 77 HOH HOH . 
K 6 HOH B 10 810 86 HOH HOH . 
K 6 HOH B 11 811 105 HOH HOH . 
K 6 HOH B 12 812 89 HOH HOH . 
K 6 HOH B 13 813 108 HOH HOH . 
K 6 HOH B 14 814 91 HOH HOH . 
K 6 HOH B 15 815 2 HOH HOH . 
K 6 HOH B 16 816 42 HOH HOH . 
K 6 HOH B 17 817 28 HOH HOH . 
K 6 HOH B 18 818 74 HOH HOH . 
K 6 HOH B 19 819 46 HOH HOH . 
K 6 HOH B 20 820 92 HOH HOH . 
K 6 HOH B 21 821 44 HOH HOH . 
K 6 HOH B 22 822 64 HOH HOH . 
K 6 HOH B 23 823 30 HOH HOH . 
K 6 HOH B 24 824 106 HOH HOH . 
K 6 HOH B 25 825 49 HOH HOH . 
K 6 HOH B 26 826 59 HOH HOH . 
K 6 HOH B 27 827 84 HOH HOH . 
K 6 HOH B 28 828 107 HOH HOH . 
K 6 HOH B 29 829 117 HOH HOH . 
K 6 HOH B 30 830 98 HOH HOH . 
K 6 HOH B 31 831 126 HOH HOH . 
K 6 HOH B 32 832 54 HOH HOH . 
K 6 HOH B 33 833 31 HOH HOH . 
K 6 HOH B 34 834 26 HOH HOH . 
K 6 HOH B 35 835 18 HOH HOH . 
K 6 HOH B 36 836 36 HOH HOH . 
K 6 HOH B 37 837 119 HOH HOH . 
K 6 HOH B 38 838 95 HOH HOH . 
K 6 HOH B 39 839 128 HOH HOH . 
K 6 HOH B 40 840 112 HOH HOH . 
K 6 HOH B 41 841 121 HOH HOH . 
K 6 HOH B 42 842 104 HOH HOH . 
K 6 HOH B 43 843 34 HOH HOH . 
K 6 HOH B 44 844 27 HOH HOH . 
K 6 HOH B 45 845 35 HOH HOH . 
K 6 HOH B 46 846 81 HOH HOH . 
K 6 HOH B 47 847 33 HOH HOH . 
L 6 HOH C 1 201 29 HOH HOH . 
M 6 HOH D 1 201 116 HOH HOH . 
M 6 HOH D 2 202 14 HOH HOH . 
M 6 HOH D 3 203 6 HOH HOH . 
M 6 HOH D 4 204 3 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.068 
_atom_site.Cartn_y               12.74 
_atom_site.Cartn_z               -47.366 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.63 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           701 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#