data_8BZ3 # _model_server_result.job_id RUrzeoax36nDglixH8qHhQ _model_server_result.datetime_utc '2024-11-21 23:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8BZ3 # _exptl.entry_id 8BZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.505 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] hydrogen sulfate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BZ3 _cell.length_a 36.764 _cell.length_b 57.983 _cell.length_c 63.389 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N2 O16 S' _chem_comp.formula_weight 584.505 _chem_comp.id SQR _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] hydrogen sulfate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 N28 SQR doub 290 n n O08 S05 SQR doub 291 n n O20 C19 SQR sing 292 n n N28 O29 SQR doub 293 n n N28 C27 SQR sing 294 n n C19 C18 SQR sing 295 n n C26 C27 SQR doub 296 n y C26 C25 SQR sing 297 n y C27 C31 SQR sing 298 n y C25 C24 SQR doub 299 n y O07 S05 SQR doub 300 n n O10 C09 SQR sing 301 n n S05 O06 SQR sing 302 n n S05 O04 SQR sing 303 n n O21 C18 SQR sing 304 n n O21 C22 SQR sing 305 n n C18 C17 SQR sing 306 n n C31 C32 SQR doub 307 n y C24 C32 SQR sing 308 n y C24 O23 SQR sing 309 n n C03 O04 SQR sing 310 n n C03 C09 SQR sing 311 n n C03 C02 SQR sing 312 n n C09 C15 SQR sing 313 n n C15 O16 SQR sing 314 n n C15 O14 SQR sing 315 n n O23 C22 SQR sing 316 n n C22 C33 SQR sing 317 n n C17 O16 SQR sing 318 n n C17 C38 SQR sing 319 n n C11 C02 SQR sing 320 n n C11 O14 SQR sing 321 n n C11 C12 SQR sing 322 n n C02 O01 SQR sing 323 n n O13 C12 SQR sing 324 n n C33 C38 SQR sing 325 n n C33 N34 SQR sing 326 n n C38 O39 SQR sing 327 n n N34 C35 SQR sing 328 n n O37 C35 SQR doub 329 n n C35 C36 SQR sing 330 n n C15 H1 SQR sing 331 n n C17 H2 SQR sing 332 n n C22 H3 SQR sing 333 n n C26 H4 SQR sing 334 n n C02 H5 SQR sing 335 n n C03 H6 SQR sing 336 n n C09 H7 SQR sing 337 n n C11 H8 SQR sing 338 n n C12 H9 SQR sing 339 n n C12 H10 SQR sing 340 n n C18 H11 SQR sing 341 n n C19 H12 SQR sing 342 n n C19 H13 SQR sing 343 n n C25 H14 SQR sing 344 n n C31 H15 SQR sing 345 n n C32 H16 SQR sing 346 n n C33 H17 SQR sing 347 n n C36 H18 SQR sing 348 n n C36 H19 SQR sing 349 n n C36 H20 SQR sing 350 n n C38 H21 SQR sing 351 n n N34 H22 SQR sing 352 n n O01 H23 SQR sing 353 n n O10 H24 SQR sing 354 n n O13 H25 SQR sing 355 n n O20 H26 SQR sing 356 n n O39 H27 SQR sing 357 n n O06 H28 SQR sing 358 n n # _atom_sites.entry_id 8BZ3 _atom_sites.fract_transf_matrix[1][1] 0.027201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SQR A 1 301 301 SQR LIG . C 3 HOH A 1 401 117 HOH HOH . C 3 HOH A 2 402 94 HOH HOH . C 3 HOH A 3 403 93 HOH HOH . C 3 HOH A 4 404 129 HOH HOH . C 3 HOH A 5 405 36 HOH HOH . C 3 HOH A 6 406 18 HOH HOH . C 3 HOH A 7 407 68 HOH HOH . C 3 HOH A 8 408 124 HOH HOH . C 3 HOH A 9 409 82 HOH HOH . C 3 HOH A 10 410 146 HOH HOH . C 3 HOH A 11 411 43 HOH HOH . C 3 HOH A 12 412 7 HOH HOH . C 3 HOH A 13 413 5 HOH HOH . C 3 HOH A 14 414 27 HOH HOH . C 3 HOH A 15 415 24 HOH HOH . C 3 HOH A 16 416 115 HOH HOH . C 3 HOH A 17 417 34 HOH HOH . C 3 HOH A 18 418 55 HOH HOH . C 3 HOH A 19 419 31 HOH HOH . C 3 HOH A 20 420 51 HOH HOH . C 3 HOH A 21 421 53 HOH HOH . C 3 HOH A 22 422 56 HOH HOH . C 3 HOH A 23 423 62 HOH HOH . C 3 HOH A 24 424 20 HOH HOH . C 3 HOH A 25 425 77 HOH HOH . C 3 HOH A 26 426 150 HOH HOH . C 3 HOH A 27 427 96 HOH HOH . C 3 HOH A 28 428 98 HOH HOH . C 3 HOH A 29 429 17 HOH HOH . C 3 HOH A 30 430 92 HOH HOH . C 3 HOH A 31 431 35 HOH HOH . C 3 HOH A 32 432 15 HOH HOH . C 3 HOH A 33 433 148 HOH HOH . C 3 HOH A 34 434 4 HOH HOH . C 3 HOH A 35 435 113 HOH HOH . C 3 HOH A 36 436 131 HOH HOH . C 3 HOH A 37 437 33 HOH HOH . C 3 HOH A 38 438 126 HOH HOH . C 3 HOH A 39 439 159 HOH HOH . C 3 HOH A 40 440 78 HOH HOH . C 3 HOH A 41 441 91 HOH HOH . C 3 HOH A 42 442 29 HOH HOH . C 3 HOH A 43 443 118 HOH HOH . C 3 HOH A 44 444 67 HOH HOH . C 3 HOH A 45 445 44 HOH HOH . C 3 HOH A 46 446 143 HOH HOH . C 3 HOH A 47 447 10 HOH HOH . C 3 HOH A 48 448 101 HOH HOH . C 3 HOH A 49 449 90 HOH HOH . C 3 HOH A 50 450 109 HOH HOH . C 3 HOH A 51 451 162 HOH HOH . C 3 HOH A 52 452 86 HOH HOH . C 3 HOH A 53 453 38 HOH HOH . C 3 HOH A 54 454 14 HOH HOH . C 3 HOH A 55 455 21 HOH HOH . C 3 HOH A 56 456 95 HOH HOH . C 3 HOH A 57 457 23 HOH HOH . C 3 HOH A 58 458 3 HOH HOH . C 3 HOH A 59 459 50 HOH HOH . C 3 HOH A 60 460 73 HOH HOH . C 3 HOH A 61 461 22 HOH HOH . C 3 HOH A 62 462 32 HOH HOH . C 3 HOH A 63 463 2 HOH HOH . C 3 HOH A 64 464 161 HOH HOH . C 3 HOH A 65 465 168 HOH HOH . C 3 HOH A 66 466 119 HOH HOH . C 3 HOH A 67 467 45 HOH HOH . C 3 HOH A 68 468 13 HOH HOH . C 3 HOH A 69 469 160 HOH HOH . C 3 HOH A 70 470 105 HOH HOH . C 3 HOH A 71 471 40 HOH HOH . C 3 HOH A 72 472 6 HOH HOH . C 3 HOH A 73 473 37 HOH HOH . C 3 HOH A 74 474 111 HOH HOH . C 3 HOH A 75 475 19 HOH HOH . C 3 HOH A 76 476 41 HOH HOH . C 3 HOH A 77 477 112 HOH HOH . C 3 HOH A 78 478 165 HOH HOH . C 3 HOH A 79 479 87 HOH HOH . C 3 HOH A 80 480 152 HOH HOH . C 3 HOH A 81 481 123 HOH HOH . C 3 HOH A 82 482 61 HOH HOH . C 3 HOH A 83 483 85 HOH HOH . C 3 HOH A 84 484 75 HOH HOH . C 3 HOH A 85 485 128 HOH HOH . C 3 HOH A 86 486 122 HOH HOH . C 3 HOH A 87 487 60 HOH HOH . C 3 HOH A 88 488 16 HOH HOH . C 3 HOH A 89 489 25 HOH HOH . C 3 HOH A 90 490 30 HOH HOH . C 3 HOH A 91 491 46 HOH HOH . C 3 HOH A 92 492 76 HOH HOH . C 3 HOH A 93 493 144 HOH HOH . C 3 HOH A 94 494 42 HOH HOH . C 3 HOH A 95 495 104 HOH HOH . C 3 HOH A 96 496 138 HOH HOH . C 3 HOH A 97 497 39 HOH HOH . C 3 HOH A 98 498 49 HOH HOH . C 3 HOH A 99 499 157 HOH HOH . C 3 HOH A 100 500 65 HOH HOH . C 3 HOH A 101 501 106 HOH HOH . C 3 HOH A 102 502 12 HOH HOH . C 3 HOH A 103 503 8 HOH HOH . C 3 HOH A 104 504 110 HOH HOH . C 3 HOH A 105 505 58 HOH HOH . C 3 HOH A 106 506 54 HOH HOH . C 3 HOH A 107 507 28 HOH HOH . C 3 HOH A 108 508 97 HOH HOH . C 3 HOH A 109 509 156 HOH HOH . C 3 HOH A 110 510 135 HOH HOH . C 3 HOH A 111 511 26 HOH HOH . C 3 HOH A 112 512 48 HOH HOH . C 3 HOH A 113 513 59 HOH HOH . C 3 HOH A 114 514 163 HOH HOH . C 3 HOH A 115 515 154 HOH HOH . C 3 HOH A 116 516 79 HOH HOH . C 3 HOH A 117 517 57 HOH HOH . C 3 HOH A 118 518 137 HOH HOH . C 3 HOH A 119 519 63 HOH HOH . C 3 HOH A 120 520 69 HOH HOH . C 3 HOH A 121 521 52 HOH HOH . C 3 HOH A 122 522 11 HOH HOH . C 3 HOH A 123 523 136 HOH HOH . C 3 HOH A 124 524 64 HOH HOH . C 3 HOH A 125 525 114 HOH HOH . C 3 HOH A 126 526 142 HOH HOH . C 3 HOH A 127 527 166 HOH HOH . C 3 HOH A 128 528 169 HOH HOH . C 3 HOH A 129 529 1 HOH HOH . C 3 HOH A 130 530 81 HOH HOH . C 3 HOH A 131 531 167 HOH HOH . C 3 HOH A 132 532 47 HOH HOH . C 3 HOH A 133 533 151 HOH HOH . C 3 HOH A 134 534 102 HOH HOH . C 3 HOH A 135 535 80 HOH HOH . C 3 HOH A 136 536 130 HOH HOH . C 3 HOH A 137 537 139 HOH HOH . C 3 HOH A 138 538 155 HOH HOH . C 3 HOH A 139 539 141 HOH HOH . C 3 HOH A 140 540 132 HOH HOH . C 3 HOH A 141 541 107 HOH HOH . C 3 HOH A 142 542 158 HOH HOH . C 3 HOH A 143 543 134 HOH HOH . C 3 HOH A 144 544 108 HOH HOH . C 3 HOH A 145 545 147 HOH HOH . C 3 HOH A 146 546 74 HOH HOH . C 3 HOH A 147 547 127 HOH HOH . C 3 HOH A 148 548 9 HOH HOH . C 3 HOH A 149 549 149 HOH HOH . C 3 HOH A 150 550 125 HOH HOH . C 3 HOH A 151 551 66 HOH HOH . C 3 HOH A 152 552 145 HOH HOH . C 3 HOH A 153 553 71 HOH HOH . C 3 HOH A 154 554 153 HOH HOH . C 3 HOH A 155 555 103 HOH HOH . C 3 HOH A 156 556 99 HOH HOH . C 3 HOH A 157 557 116 HOH HOH . C 3 HOH A 158 558 83 HOH HOH . C 3 HOH A 159 559 164 HOH HOH . C 3 HOH A 160 560 88 HOH HOH . C 3 HOH A 161 561 72 HOH HOH . C 3 HOH A 162 562 133 HOH HOH . C 3 HOH A 163 563 84 HOH HOH . C 3 HOH A 164 564 100 HOH HOH . C 3 HOH A 165 565 121 HOH HOH . C 3 HOH A 166 566 89 HOH HOH . C 3 HOH A 167 567 120 HOH HOH . C 3 HOH A 168 568 70 HOH HOH . C 3 HOH A 169 569 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 SQR . . . B 2 20.414 -8.847 -1.134 1 19.02 ? C15 SQR 301 A 1 HETATM 2 C C17 SQR . . . B 2 22.574 -9.754 -0.842 1 36.68 ? C17 SQR 301 A 1 HETATM 3 C C22 SQR . . . B 2 25.241 -10.958 -0.847 1 76.28 ? C22 SQR 301 A 1 HETATM 4 C C24 SQR . . . B 2 27.357 -11.535 -1.543 1 145.34 ? C24 SQR 301 A 1 HETATM 5 C C26 SQR . . . B 2 27.663 -13.322 -3.109 1 173.31 ? C26 SQR 301 A 1 HETATM 6 C C02 SQR . . . B 2 18.345 -6.908 -0.617 1 15.3 ? C02 SQR 301 A 1 HETATM 7 C C03 SQR . . . B 2 18.049 -8.076 -1.475 1 18.99 ? C03 SQR 301 A 1 HETATM 8 C C09 SQR . . . B 2 18.927 -9.229 -1.195 1 19.22 ? C09 SQR 301 A 1 HETATM 9 C C11 SQR . . . B 2 19.844 -6.571 -0.666 1 13.94 ? C11 SQR 301 A 1 HETATM 10 C C12 SQR . . . B 2 20.194 -5.432 0.24 1 12.76 ? C12 SQR 301 A 1 HETATM 11 C C18 SQR . . . B 2 23.103 -10.575 -2.023 1 47.45 ? C18 SQR 301 A 1 HETATM 12 C C19 SQR . . . B 2 22.607 -10.086 -3.342 1 45.63 ? C19 SQR 301 A 1 HETATM 13 C C25 SQR . . . B 2 26.836 -12.408 -2.486 1 160.07 ? C25 SQR 301 A 1 HETATM 14 C C27 SQR . . . B 2 29.008 -13.354 -2.789 1 185.15 ? C27 SQR 301 A 1 HETATM 15 C C31 SQR . . . B 2 29.535 -12.483 -1.855 1 179.21 ? C31 SQR 301 A 1 HETATM 16 C C32 SQR . . . B 2 28.706 -11.569 -1.232 1 165.29 ? C32 SQR 301 A 1 HETATM 17 C C33 SQR . . . B 2 24.673 -10.259 0.388 1 56.87 ? C33 SQR 301 A 1 HETATM 18 C C35 SQR . . . B 2 26.352 -10.468 2.282 1 52.84 ? C35 SQR 301 A 1 HETATM 19 C C36 SQR . . . B 2 26.891 -11.209 3.506 1 52.29 ? C36 SQR 301 A 1 HETATM 20 C C38 SQR . . . B 2 23.193 -10.245 0.423 1 41.33 ? C38 SQR 301 A 1 HETATM 21 N N28 SQR . . . B 2 29.867 -14.309 -3.45 1 197.34 ? N28 SQR 301 A 1 HETATM 22 N N34 SQR . . . B 2 25.188 -10.978 1.582 1 53.82 ? N34 SQR 301 A 1 HETATM 23 O O01 SQR . . . B 2 17.93 -7.169 0.744 1 12.69 ? O01 SQR 301 A 1 HETATM 24 O O04 SQR . . . B 2 16.657 -8.522 -1.274 1 22.43 ? O04 SQR 301 A 1 HETATM 25 O O06 SQR . . . B 2 15.015 -6.532 -1.684 1 33.44 ? O06 SQR 301 A 1 HETATM 26 O O07 SQR . . . B 2 14.272 -8.813 -2.248 1 32.7 ? O07 SQR 301 A 1 HETATM 27 O O08 SQR . . . B 2 15.941 -7.522 -3.598 1 33.71 ? O08 SQR 301 A 1 HETATM 28 O O10 SQR . . . B 2 18.77 -10.213 -2.237 1 21.72 ? O10 SQR 301 A 1 HETATM 29 O O13 SQR . . . B 2 21.578 -5.208 0.135 1 13.59 ? O13 SQR 301 A 1 HETATM 30 O O14 SQR . . . B 2 20.649 -7.716 -0.242 1 14.48 ? O14 SQR 301 A 1 HETATM 31 O O16 SQR . . . B 2 21.15 -9.927 -0.707 1 24.84 ? O16 SQR 301 A 1 HETATM 32 O O20 SQR . . . B 2 22.988 -8.746 -3.49 1 43.78 ? O20 SQR 301 A 1 HETATM 33 O O21 SQR . . . B 2 24.588 -10.511 -2.084 1 60.41 ? O21 SQR 301 A 1 HETATM 34 O O23 SQR . . . B 2 26.553 -10.591 -0.9 1 111.16 ? O23 SQR 301 A 1 HETATM 35 O O29 SQR . . . B 2 31.189 -14.489 -3.017 1 204.69 -1 O29 SQR 301 A 1 HETATM 36 O O30 SQR . . . B 2 29.441 -14.919 -4.356 1 200.31 ? O30 SQR 301 A 1 HETATM 37 O O37 SQR . . . B 2 26.881 -9.476 1.907 1 52.32 ? O37 SQR 301 A 1 HETATM 38 O O39 SQR . . . B 2 22.825 -9.381 1.532 1 33.05 ? O39 SQR 301 A 1 HETATM 39 S S05 SQR . . . B 2 15.455 -7.88 -2.213 1 31.24 ? S05 SQR 301 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #