data_8BZJ
#
_model_server_result.job_id            y41BsPAO4DX8-QCxE1nrfQ 
_model_server_result.datetime_utc      '2025-01-10 11:52:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bzj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    8BZJ 
#
_exptl.entry_id    8BZJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.855 
_cell.angle_beta          89.175 
_cell.angle_gamma         62.12 
_cell.entry_id            8BZJ 
_cell.length_a            55.049 
_cell.length_b            57.737 
_cell.length_c            61.771 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BZJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8BZJ 
_atom_sites.fract_transf_matrix[1][1]    0.018166 
_atom_sites.fract_transf_matrix[1][2]    -0.00961 
_atom_sites.fract_transf_matrix[1][3]    -0.000118 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019594 
_atom_sites.fract_transf_matrix[2][3]    -0.000294 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SJX A 1 401 401 SJX MR5 . 
D 2 SJX B 1 401 401 SJX MR5 . 
E 3 EDO B 1 402 501 EDO EDO . 
F 4 HOH A 1 501 16 HOH HOH . 
F 4 HOH A 2 502 18 HOH HOH . 
F 4 HOH A 3 503 8 HOH HOH . 
F 4 HOH A 4 504 44 HOH HOH . 
F 4 HOH A 5 505 91 HOH HOH . 
F 4 HOH A 6 506 65 HOH HOH . 
F 4 HOH A 7 507 11 HOH HOH . 
F 4 HOH A 8 508 52 HOH HOH . 
F 4 HOH A 9 509 102 HOH HOH . 
F 4 HOH A 10 510 36 HOH HOH . 
F 4 HOH A 11 511 62 HOH HOH . 
F 4 HOH A 12 512 39 HOH HOH . 
F 4 HOH A 13 513 126 HOH HOH . 
F 4 HOH A 14 514 1 HOH HOH . 
F 4 HOH A 15 515 63 HOH HOH . 
F 4 HOH A 16 516 54 HOH HOH . 
F 4 HOH A 17 517 2 HOH HOH . 
F 4 HOH A 18 518 20 HOH HOH . 
F 4 HOH A 19 519 5 HOH HOH . 
F 4 HOH A 20 520 53 HOH HOH . 
F 4 HOH A 21 521 10 HOH HOH . 
F 4 HOH A 22 522 101 HOH HOH . 
F 4 HOH A 23 523 61 HOH HOH . 
F 4 HOH A 24 524 22 HOH HOH . 
F 4 HOH A 25 525 30 HOH HOH . 
F 4 HOH A 26 526 60 HOH HOH . 
F 4 HOH A 27 527 24 HOH HOH . 
F 4 HOH A 28 528 6 HOH HOH . 
F 4 HOH A 29 529 3 HOH HOH . 
F 4 HOH A 30 530 85 HOH HOH . 
F 4 HOH A 31 531 64 HOH HOH . 
F 4 HOH A 32 532 72 HOH HOH . 
F 4 HOH A 33 533 55 HOH HOH . 
F 4 HOH A 34 534 38 HOH HOH . 
F 4 HOH A 35 535 58 HOH HOH . 
F 4 HOH A 36 536 114 HOH HOH . 
F 4 HOH A 37 537 48 HOH HOH . 
F 4 HOH A 38 538 31 HOH HOH . 
F 4 HOH A 39 539 75 HOH HOH . 
F 4 HOH A 40 540 86 HOH HOH . 
F 4 HOH A 41 541 68 HOH HOH . 
F 4 HOH A 42 542 87 HOH HOH . 
F 4 HOH A 43 543 117 HOH HOH . 
F 4 HOH A 44 544 92 HOH HOH . 
G 4 HOH B 1 501 130 HOH HOH . 
G 4 HOH B 2 502 13 HOH HOH . 
G 4 HOH B 3 503 27 HOH HOH . 
G 4 HOH B 4 504 12 HOH HOH . 
G 4 HOH B 5 505 98 HOH HOH . 
G 4 HOH B 6 506 89 HOH HOH . 
G 4 HOH B 7 507 113 HOH HOH . 
G 4 HOH B 8 508 14 HOH HOH . 
G 4 HOH B 9 509 45 HOH HOH . 
G 4 HOH B 10 510 43 HOH HOH . 
G 4 HOH B 11 511 7 HOH HOH . 
G 4 HOH B 12 512 9 HOH HOH . 
G 4 HOH B 13 513 71 HOH HOH . 
G 4 HOH B 14 514 119 HOH HOH . 
G 4 HOH B 15 515 17 HOH HOH . 
G 4 HOH B 16 516 28 HOH HOH . 
G 4 HOH B 17 517 29 HOH HOH . 
G 4 HOH B 18 518 47 HOH HOH . 
G 4 HOH B 19 519 97 HOH HOH . 
G 4 HOH B 20 520 116 HOH HOH . 
G 4 HOH B 21 521 76 HOH HOH . 
G 4 HOH B 22 522 107 HOH HOH . 
G 4 HOH B 23 523 108 HOH HOH . 
G 4 HOH B 24 524 15 HOH HOH . 
G 4 HOH B 25 525 122 HOH HOH . 
G 4 HOH B 26 526 77 HOH HOH . 
G 4 HOH B 27 527 103 HOH HOH . 
G 4 HOH B 28 528 90 HOH HOH . 
G 4 HOH B 29 529 81 HOH HOH . 
G 4 HOH B 30 530 78 HOH HOH . 
G 4 HOH B 31 531 40 HOH HOH . 
G 4 HOH B 32 532 106 HOH HOH . 
G 4 HOH B 33 533 23 HOH HOH . 
G 4 HOH B 34 534 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 3.376 -50.26 48.047 1 60.62 ? C1 EDO 402 B 1 
HETATM 2 O O1 EDO . . . E 3 3.146 -51.148 49.143 1 67.51 ? O1 EDO 402 B 1 
HETATM 3 C C2 EDO . . . E 3 2.029 -49.954 47.408 1 66.69 ? C2 EDO 402 B 1 
HETATM 4 O O2 EDO . . . E 3 2.231 -49.04 46.326 1 71.02 ? O2 EDO 402 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#