data_8BZS # _model_server_result.job_id '_YgLvdJ2iNAt2tLNXxqcDA' _model_server_result.datetime_utc '2025-01-10 17:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bzs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 8BZS # _exptl.entry_id 8BZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BZS _cell.length_a 128.51 _cell.length_b 128.51 _cell.length_c 116.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.59 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.379 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id 3WL _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Baicalein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C 3WL doub 1 n y C5 C4 3WL sing 2 n y C C1 3WL sing 3 n y C4 C3 3WL doub 4 n y C1 C2 3WL doub 5 n y C3 C2 3WL sing 6 n y C3 C6 3WL sing 7 n n C7 C6 3WL doub 8 n n C7 C8 3WL sing 9 n n O C8 3WL doub 10 n n C6 O1 3WL sing 11 n n C8 C9 3WL sing 12 n n O1 C14 3WL sing 13 n n C9 C14 3WL doub 14 n y C9 C10 3WL sing 15 n y O4 C10 3WL sing 16 n n C14 C13 3WL sing 17 n y C10 C11 3WL doub 18 n y C13 C12 3WL doub 19 n y C11 C12 3WL sing 20 n y C11 O3 3WL sing 21 n n C12 O2 3WL sing 22 n n C4 H1 3WL sing 23 n n C5 H2 3WL sing 24 n n C7 H3 3WL sing 25 n n C13 H4 3WL sing 26 n n O2 H5 3WL sing 27 n n O3 H6 3WL sing 28 n n O4 H7 3WL sing 29 n n C2 H8 3WL sing 30 n n C1 H9 3WL sing 31 n n C H10 3WL sing 32 n n # _atom_sites.entry_id 8BZS _atom_sites.fract_transf_matrix[1][1] 0.007781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 902 PLP PLP . C 3 3WL A 1 902 1301 3WL BCL . D 4 HOH A 1 1001 40 HOH HOH . D 4 HOH A 2 1002 45 HOH HOH . D 4 HOH A 3 1003 71 HOH HOH . D 4 HOH A 4 1004 52 HOH HOH . D 4 HOH A 5 1005 64 HOH HOH . D 4 HOH A 6 1006 44 HOH HOH . D 4 HOH A 7 1007 51 HOH HOH . D 4 HOH A 8 1008 29 HOH HOH . D 4 HOH A 9 1009 80 HOH HOH . D 4 HOH A 10 1010 66 HOH HOH . D 4 HOH A 11 1011 53 HOH HOH . D 4 HOH A 12 1012 16 HOH HOH . D 4 HOH A 13 1013 47 HOH HOH . D 4 HOH A 14 1014 48 HOH HOH . D 4 HOH A 15 1015 76 HOH HOH . D 4 HOH A 16 1016 43 HOH HOH . D 4 HOH A 17 1017 78 HOH HOH . D 4 HOH A 18 1018 65 HOH HOH . D 4 HOH A 19 1019 57 HOH HOH . D 4 HOH A 20 1020 41 HOH HOH . D 4 HOH A 21 1021 56 HOH HOH . D 4 HOH A 22 1022 88 HOH HOH . D 4 HOH A 23 1023 75 HOH HOH . D 4 HOH A 24 1024 46 HOH HOH . D 4 HOH A 25 1025 102 HOH HOH . D 4 HOH A 26 1026 60 HOH HOH . D 4 HOH A 27 1027 100 HOH HOH . D 4 HOH A 28 1028 96 HOH HOH . D 4 HOH A 29 1029 84 HOH HOH . D 4 HOH A 30 1030 171 HOH HOH . D 4 HOH A 31 1031 141 HOH HOH . D 4 HOH A 32 1032 89 HOH HOH . D 4 HOH A 33 1033 54 HOH HOH . D 4 HOH A 34 1034 38 HOH HOH . D 4 HOH A 35 1035 50 HOH HOH . D 4 HOH A 36 1036 31 HOH HOH . D 4 HOH A 37 1037 94 HOH HOH . D 4 HOH A 38 1038 115 HOH HOH . D 4 HOH A 39 1039 144 HOH HOH . D 4 HOH A 40 1040 30 HOH HOH . D 4 HOH A 41 1041 173 HOH HOH . D 4 HOH A 42 1042 42 HOH HOH . D 4 HOH A 43 1043 58 HOH HOH . D 4 HOH A 44 1044 72 HOH HOH . D 4 HOH A 45 1045 116 HOH HOH . D 4 HOH A 46 1046 131 HOH HOH . D 4 HOH A 47 1047 87 HOH HOH . D 4 HOH A 48 1048 150 HOH HOH . D 4 HOH A 49 1049 101 HOH HOH . D 4 HOH A 50 1050 105 HOH HOH . D 4 HOH A 51 1051 158 HOH HOH . D 4 HOH A 52 1052 107 HOH HOH . D 4 HOH A 53 1053 5 HOH HOH . D 4 HOH A 54 1054 86 HOH HOH . D 4 HOH A 55 1055 23 HOH HOH . D 4 HOH A 56 1056 62 HOH HOH . D 4 HOH A 57 1057 113 HOH HOH . D 4 HOH A 58 1058 67 HOH HOH . D 4 HOH A 59 1059 74 HOH HOH . D 4 HOH A 60 1060 134 HOH HOH . D 4 HOH A 61 1061 69 HOH HOH . D 4 HOH A 62 1062 73 HOH HOH . D 4 HOH A 63 1063 139 HOH HOH . D 4 HOH A 64 1064 59 HOH HOH . D 4 HOH A 65 1065 90 HOH HOH . D 4 HOH A 66 1066 70 HOH HOH . D 4 HOH A 67 1067 7 HOH HOH . D 4 HOH A 68 1068 97 HOH HOH . D 4 HOH A 69 1069 112 HOH HOH . D 4 HOH A 70 1070 103 HOH HOH . D 4 HOH A 71 1071 140 HOH HOH . D 4 HOH A 72 1072 127 HOH HOH . D 4 HOH A 73 1073 93 HOH HOH . D 4 HOH A 74 1074 49 HOH HOH . D 4 HOH A 75 1075 91 HOH HOH . D 4 HOH A 76 1076 119 HOH HOH . D 4 HOH A 77 1077 61 HOH HOH . D 4 HOH A 78 1078 55 HOH HOH . D 4 HOH A 79 1079 108 HOH HOH . D 4 HOH A 80 1080 124 HOH HOH . D 4 HOH A 81 1081 170 HOH HOH . D 4 HOH A 82 1082 111 HOH HOH . D 4 HOH A 83 1083 132 HOH HOH . D 4 HOH A 84 1084 110 HOH HOH . D 4 HOH A 85 1085 126 HOH HOH . D 4 HOH A 86 1086 98 HOH HOH . D 4 HOH A 87 1087 122 HOH HOH . D 4 HOH A 88 1088 177 HOH HOH . D 4 HOH A 89 1089 169 HOH HOH . D 4 HOH A 90 1090 135 HOH HOH . D 4 HOH A 91 1091 83 HOH HOH . D 4 HOH A 92 1092 109 HOH HOH . D 4 HOH A 93 1093 95 HOH HOH . D 4 HOH A 94 1094 106 HOH HOH . D 4 HOH A 95 1095 145 HOH HOH . D 4 HOH A 96 1096 196 HOH HOH . D 4 HOH A 97 1097 1 HOH HOH . D 4 HOH A 98 1098 28 HOH HOH . D 4 HOH A 99 1099 149 HOH HOH . D 4 HOH A 100 1100 161 HOH HOH . D 4 HOH A 101 1101 13 HOH HOH . D 4 HOH A 102 1102 27 HOH HOH . D 4 HOH A 103 1103 136 HOH HOH . D 4 HOH A 104 1104 148 HOH HOH . D 4 HOH A 105 1105 183 HOH HOH . D 4 HOH A 106 1106 133 HOH HOH . D 4 HOH A 107 1107 130 HOH HOH . D 4 HOH A 108 1108 147 HOH HOH . D 4 HOH A 109 1109 151 HOH HOH . D 4 HOH A 110 1110 85 HOH HOH . D 4 HOH A 111 1111 68 HOH HOH . D 4 HOH A 112 1112 162 HOH HOH . D 4 HOH A 113 1113 123 HOH HOH . D 4 HOH A 114 1114 37 HOH HOH . D 4 HOH A 115 1115 174 HOH HOH . D 4 HOH A 116 1116 154 HOH HOH . D 4 HOH A 117 1117 117 HOH HOH . D 4 HOH A 118 1118 9 HOH HOH . D 4 HOH A 119 1119 79 HOH HOH . D 4 HOH A 120 1120 128 HOH HOH . D 4 HOH A 121 1121 160 HOH HOH . D 4 HOH A 122 1122 82 HOH HOH . D 4 HOH A 123 1123 163 HOH HOH . D 4 HOH A 124 1124 121 HOH HOH . D 4 HOH A 125 1125 165 HOH HOH . D 4 HOH A 126 1126 157 HOH HOH . D 4 HOH A 127 1127 125 HOH HOH . D 4 HOH A 128 1128 152 HOH HOH . D 4 HOH A 129 1129 146 HOH HOH . D 4 HOH A 130 1130 153 HOH HOH . D 4 HOH A 131 1131 182 HOH HOH . D 4 HOH A 132 1132 8 HOH HOH . D 4 HOH A 133 1133 104 HOH HOH . D 4 HOH A 134 1134 11 HOH HOH . D 4 HOH A 135 1135 186 HOH HOH . D 4 HOH A 136 1136 143 HOH HOH . D 4 HOH A 137 1137 81 HOH HOH . D 4 HOH A 138 1138 137 HOH HOH . D 4 HOH A 139 1139 156 HOH HOH . D 4 HOH A 140 1140 120 HOH HOH . D 4 HOH A 141 1141 26 HOH HOH . D 4 HOH A 142 1142 6 HOH HOH . D 4 HOH A 143 1143 166 HOH HOH . D 4 HOH A 144 1144 36 HOH HOH . D 4 HOH A 145 1145 63 HOH HOH . D 4 HOH A 146 1146 129 HOH HOH . D 4 HOH A 147 1147 32 HOH HOH . D 4 HOH A 148 1148 142 HOH HOH . D 4 HOH A 149 1149 24 HOH HOH . D 4 HOH A 150 1150 114 HOH HOH . D 4 HOH A 151 1151 184 HOH HOH . D 4 HOH A 152 1152 168 HOH HOH . D 4 HOH A 153 1153 176 HOH HOH . D 4 HOH A 154 1154 118 HOH HOH . D 4 HOH A 155 1155 12 HOH HOH . D 4 HOH A 156 1156 188 HOH HOH . D 4 HOH A 157 1157 92 HOH HOH . D 4 HOH A 158 1158 178 HOH HOH . D 4 HOH A 159 1159 155 HOH HOH . D 4 HOH A 160 1160 159 HOH HOH . D 4 HOH A 161 1161 77 HOH HOH . D 4 HOH A 162 1162 181 HOH HOH . D 4 HOH A 163 1163 19 HOH HOH . D 4 HOH A 164 1164 175 HOH HOH . D 4 HOH A 165 1165 138 HOH HOH . D 4 HOH A 166 1166 172 HOH HOH . D 4 HOH A 167 1167 187 HOH HOH . D 4 HOH A 168 1168 2 HOH HOH . D 4 HOH A 169 1169 179 HOH HOH . D 4 HOH A 170 1170 167 HOH HOH . D 4 HOH A 171 1171 185 HOH HOH . D 4 HOH A 172 1172 164 HOH HOH . D 4 HOH A 173 1173 190 HOH HOH . D 4 HOH A 174 1174 191 HOH HOH . D 4 HOH A 175 1175 189 HOH HOH . D 4 HOH A 176 1176 10 HOH HOH . D 4 HOH A 177 1177 193 HOH HOH . D 4 HOH A 178 1178 33 HOH HOH . D 4 HOH A 179 1179 4 HOH HOH . D 4 HOH A 180 1180 34 HOH HOH . D 4 HOH A 181 1181 192 HOH HOH . D 4 HOH A 182 1182 180 HOH HOH . D 4 HOH A 183 1183 39 HOH HOH . D 4 HOH A 184 1184 15 HOH HOH . D 4 HOH A 185 1185 194 HOH HOH . D 4 HOH A 186 1186 99 HOH HOH . D 4 HOH A 187 1187 3 HOH HOH . D 4 HOH A 188 1188 17 HOH HOH . D 4 HOH A 189 1189 25 HOH HOH . D 4 HOH A 190 1190 14 HOH HOH . D 4 HOH A 191 1191 22 HOH HOH . D 4 HOH A 192 1192 195 HOH HOH . D 4 HOH A 193 1193 18 HOH HOH . D 4 HOH A 194 1194 20 HOH HOH . D 4 HOH A 195 1195 21 HOH HOH . D 4 HOH A 196 1196 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3WL . . . C 3 38.757 35.348 27.066 0.7 43.32 ? C4 3WL 902 A 1 HETATM 2 C C5 3WL . . . C 3 39.09 34.864 25.814 0.7 42.06 ? C5 3WL 902 A 1 HETATM 3 C C6 3WL . . . C 3 37.955 34.974 29.401 0.7 45.11 ? C6 3WL 902 A 1 HETATM 4 C C7 3WL . . . C 3 37.086 34.386 30.248 0.7 43.4 ? C7 3WL 902 A 1 HETATM 5 C C8 3WL . . . C 3 36.851 34.882 31.576 0.7 41.07 ? C8 3WL 902 A 1 HETATM 6 C C10 3WL . . . C 3 37.572 36.688 33.217 0.7 46.5 ? C10 3WL 902 A 1 HETATM 7 C C13 3WL . . . C 3 39.326 37.714 31.274 0.7 50.6 ? C13 3WL 902 A 1 HETATM 8 O O 3WL . . . C 3 36.039 34.333 32.352 0.7 33.16 ? O 3WL 902 A 1 HETATM 9 C C9 3WL . . . C 3 37.647 36.06 31.946 0.7 45.21 ? C9 3WL 902 A 1 HETATM 10 C C14 3WL . . . C 3 38.533 36.614 31.015 0.7 46.52 ? C14 3WL 902 A 1 HETATM 11 C C12 3WL . . . C 3 39.228 38.304 32.523 0.7 52.43 ? C12 3WL 902 A 1 HETATM 12 O O2 3WL . . . C 3 39.984 39.384 32.825 0.7 58.53 ? O2 3WL 902 A 1 HETATM 13 C C11 3WL . . . C 3 38.351 37.793 33.492 0.7 50.8 ? C11 3WL 902 A 1 HETATM 14 O O3 3WL . . . C 3 38.282 38.392 34.719 0.7 57.58 ? O3 3WL 902 A 1 HETATM 15 O O4 3WL . . . C 3 36.743 36.196 34.166 0.7 43.19 ? O4 3WL 902 A 1 HETATM 16 O O1 3WL . . . C 3 38.684 36.068 29.761 0.7 46.63 ? O1 3WL 902 A 1 HETATM 17 C C3 3WL . . . C 3 38.262 34.484 28.049 0.7 45.48 ? C3 3WL 902 A 1 HETATM 18 C C2 3WL . . . C 3 38.17 33.117 27.761 0.7 43.78 ? C2 3WL 902 A 1 HETATM 19 C C1 3WL . . . C 3 38.501 32.646 26.503 0.7 45.14 ? C1 3WL 902 A 1 HETATM 20 C C 3WL . . . C 3 38.962 33.518 25.532 0.7 44.79 ? C 3WL 902 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #