data_8BZY
#
_model_server_result.job_id            mI46PROA772EgADLasWavQ 
_model_server_result.datetime_utc      '2025-06-16 18:43:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bzy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    8BZY 
#
_exptl.entry_id    8BZY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BZY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BZY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             22 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              22 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             96 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              96 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 258 n n 
C1 O3P PLC sing 259 n n 
C1 H11 PLC sing 260 n n 
C1 H12 PLC sing 261 n n 
C2 C3 PLC sing 262 n n 
C2 O2 PLC sing 263 n n 
C2 H2 PLC sing 264 n n 
C3 O3 PLC sing 265 n n 
C3 H31 PLC sing 266 n n 
C3 H32 PLC sing 267 n n 
C4 C5 PLC sing 268 n n 
C4 O4P PLC sing 269 n n 
C4 H41 PLC sing 270 n n 
C4 H42 PLC sing 271 n n 
C5 N PLC sing 272 n n 
C5 H51 PLC sing 273 n n 
C5 H52 PLC sing 274 n n 
C6 N PLC sing 275 n n 
C6 H61 PLC sing 276 n n 
C6 H62 PLC sing 277 n n 
C6 H63 PLC sing 278 n n 
C7 N PLC sing 279 n n 
C7 H71 PLC sing 280 n n 
C7 H72 PLC sing 281 n n 
C7 H73 PLC sing 282 n n 
C8 N PLC sing 283 n n 
C8 H81 PLC sing 284 n n 
C8 H82 PLC sing 285 n n 
C8 H83 PLC sing 286 n n 
C' C1' PLC sing 287 n n 
C' O' PLC doub 288 n n 
C' O2 PLC sing 289 n n 
C1' C2' PLC sing 290 n n 
C1' "H1'1" PLC sing 291 n n 
C1' "H1'2" PLC sing 292 n n 
C2' C3' PLC sing 293 n n 
C2' "H2'1" PLC sing 294 n n 
C2' "H2'2" PLC sing 295 n n 
C3' C4' PLC sing 296 n n 
C3' "H3'1" PLC sing 297 n n 
C3' "H3'2" PLC sing 298 n n 
C4' C5' PLC sing 299 n n 
C4' "H4'1" PLC sing 300 n n 
C4' "H4'2" PLC sing 301 n n 
C5' C6' PLC sing 302 n n 
C5' "H5'1" PLC sing 303 n n 
C5' "H5'2" PLC sing 304 n n 
C6' C7' PLC sing 305 n n 
C6' "H6'1" PLC sing 306 n n 
C6' "H6'2" PLC sing 307 n n 
C7' C8' PLC sing 308 n n 
C7' "H7'1" PLC sing 309 n n 
C7' "H7'2" PLC sing 310 n n 
C8' C9' PLC sing 311 n n 
C8' "H8'1" PLC sing 312 n n 
C8' "H8'2" PLC sing 313 n n 
C9' CA' PLC sing 314 n n 
C9' "H9'1" PLC sing 315 n n 
C9' "H9'2" PLC sing 316 n n 
CA' CB' PLC sing 317 n n 
CA' "HT'1" PLC sing 318 n n 
CA' "HT'2" PLC sing 319 n n 
CB' "HE'1" PLC sing 320 n n 
CB' "HE'2" PLC sing 321 n n 
CB' "HE'3" PLC sing 322 n n 
CB C1B PLC sing 323 n n 
CB OB PLC doub 324 n n 
CB O3 PLC sing 325 n n 
C1B C2B PLC sing 326 n n 
C1B H1A1 PLC sing 327 n n 
C1B H1A2 PLC sing 328 n n 
C2B C3B PLC sing 329 n n 
C2B H2A1 PLC sing 330 n n 
C2B H2A2 PLC sing 331 n n 
C3B C4B PLC sing 332 n n 
C3B H3A1 PLC sing 333 n n 
C3B H3A2 PLC sing 334 n n 
C4B C5B PLC sing 335 n n 
C4B H4A1 PLC sing 336 n n 
C4B H4A2 PLC sing 337 n n 
C5B C6B PLC sing 338 n n 
C5B H5A1 PLC sing 339 n n 
C5B H5A2 PLC sing 340 n n 
C6B C7B PLC sing 341 n n 
C6B H6A1 PLC sing 342 n n 
C6B H6A2 PLC sing 343 n n 
C7B C8B PLC sing 344 n n 
C7B H7A1 PLC sing 345 n n 
C7B H7A2 PLC sing 346 n n 
C8B C9B PLC sing 347 n n 
C8B H8A1 PLC sing 348 n n 
C8B H8A2 PLC sing 349 n n 
C9B CAA PLC sing 350 n n 
C9B H9A1 PLC sing 351 n n 
C9B H9A2 PLC sing 352 n n 
CAA CBA PLC sing 353 n n 
CAA HTA1 PLC sing 354 n n 
CAA HTA2 PLC sing 355 n n 
CBA HEA1 PLC sing 356 n n 
CBA HEA2 PLC sing 357 n n 
CBA HEA3 PLC sing 358 n n 
O1P P PLC doub 359 n n 
O2P P PLC sing 360 n n 
O2P HOP2 PLC sing 361 n n 
O3P P PLC sing 362 n n 
O4P P PLC sing 363 n n 
#
_atom_sites.entry_id                     8BZY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PLC A 1 601 602 PLC PLC . 
D 4 SZU A 1 602 603 SZU LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLC . . . C 3 138.068 124.34 113.636 1 96.24 ? C1 PLC 601 A 1 
HETATM 2 C C2 PLC . . . C 3 136.938 125.343 113.685 1 97.83 ? C2 PLC 601 A 1 
HETATM 3 C C3 PLC . . . C 3 136.461 125.772 112.315 1 100.81 ? C3 PLC 601 A 1 
HETATM 4 C C4 PLC . . . C 3 142.284 123.451 115.292 1 97.76 ? C4 PLC 601 A 1 
HETATM 5 C C5 PLC . . . C 3 142.623 123.501 116.762 1 101.87 ? C5 PLC 601 A 1 
HETATM 6 C C6 PLC . . . C 3 144.432 125.129 116.419 1 98.24 ? C6 PLC 601 A 1 
HETATM 7 C C7 PLC . . . C 3 143.727 124.592 118.669 1 99.81 ? C7 PLC 601 A 1 
HETATM 8 C C8 PLC . . . C 3 142.283 125.897 117.234 1 95.87 ? C8 PLC 601 A 1 
HETATM 9 C C' PLC . . . C 3 134.964 125.618 115.019 1 99.52 ? C' PLC 601 A 1 
HETATM 10 C C1' PLC . . . C 3 133.531 125.179 114.936 1 94.99 ? C1' PLC 601 A 1 
HETATM 11 C C2' PLC . . . C 3 132.662 126.154 114.212 1 91.44 ? C2' PLC 601 A 1 
HETATM 12 C C3' PLC . . . C 3 131.285 125.598 113.913 1 95.41 ? C3' PLC 601 A 1 
HETATM 13 C C4' PLC . . . C 3 130.569 126.287 112.775 1 98.06 ? C4' PLC 601 A 1 
HETATM 14 C C5' PLC . . . C 3 129.257 125.644 112.402 1 96.68 ? C5' PLC 601 A 1 
HETATM 15 C C6' PLC . . . C 3 128.507 126.322 111.287 1 92.51 ? C6' PLC 601 A 1 
HETATM 16 C C7' PLC . . . C 3 127.158 125.713 111.007 1 91.73 ? C7' PLC 601 A 1 
HETATM 17 C C8' PLC . . . C 3 126.408 126.355 109.869 1 89.88 ? C8' PLC 601 A 1 
HETATM 18 C CB PLC . . . C 3 135.15 124.977 110.532 1 96.72 ? CB PLC 601 A 1 
HETATM 19 C C1B PLC . . . C 3 133.691 124.704 110.337 1 92.18 ? C1B PLC 601 A 1 
HETATM 20 C C2B PLC . . . C 3 133.236 124.961 108.94 1 94.25 ? C2B PLC 601 A 1 
HETATM 21 C C3B PLC . . . C 3 131.743 124.762 108.769 1 94.94 ? C3B PLC 601 A 1 
HETATM 22 C C4B PLC . . . C 3 131.277 124.819 107.339 1 94.56 ? C4B PLC 601 A 1 
HETATM 23 C C5B PLC . . . C 3 130.846 126.183 106.869 1 93.6 ? C5B PLC 601 A 1 
HETATM 24 C C6B PLC . . . C 3 129.363 126.301 106.631 1 95.26 ? C6B PLC 601 A 1 
HETATM 25 C C7B PLC . . . C 3 128.83 125.352 105.588 1 95.9 ? C7B PLC 601 A 1 
HETATM 26 C C8B PLC . . . C 3 127.336 125.146 105.633 1 96.65 ? C8B PLC 601 A 1 
HETATM 27 C C9B PLC . . . C 3 126.526 126.37 105.299 1 100.16 ? C9B PLC 601 A 1 
HETATM 28 C CAA PLC . . . C 3 125.039 126.169 105.397 1 97.59 ? CAA PLC 601 A 1 
HETATM 29 C CBA PLC . . . C 3 124.249 127.4 105.029 1 93.07 ? CBA PLC 601 A 1 
HETATM 30 O O' PLC . . . C 3 135.33 126.628 115.554 1 102.15 ? O' PLC 601 A 1 
HETATM 31 O OB PLC . . . C 3 135.901 125.326 109.667 1 101.56 ? OB PLC 601 A 1 
HETATM 32 O O2 PLC . . . C 3 135.829 124.775 114.436 1 97.61 ? O2 PLC 601 A 1 
HETATM 33 O O3 PLC . . . C 3 135.528 124.8 111.793 1 101.61 ? O3 PLC 601 A 1 
HETATM 34 O O1P PLC . . . C 3 139.721 121.952 114.107 1 94.01 ? O1P PLC 601 A 1 
HETATM 35 O O2P PLC . . . C 3 139.63 122.515 116.643 1 102.71 ? O2P PLC 601 A 1 
HETATM 36 O O3P PLC . . . C 3 138.419 123.933 114.985 1 101.7 ? O3P PLC 601 A 1 
HETATM 37 O O4P PLC . . . C 3 140.94 123.954 115.046 1 106.06 ? O4P PLC 601 A 1 
HETATM 38 N N PLC . . . C 3 143.263 124.78 117.269 1 104.15 ? N PLC 601 A 1 
HETATM 39 P P PLC . . . C 3 139.683 122.97 115.212 1 117.65 ? P PLC 601 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           39 
#