data_8C08 # _model_server_result.job_id 08jBnyc-2CHCMxKGFQQVZw _model_server_result.datetime_utc '2024-11-08 10:08:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 8C08 # _exptl.entry_id 8C08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C08 _cell.length_a 46.857 _cell.length_b 46.857 _cell.length_c 309.461 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 616 1_555 A SG CYS 83 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 81 B CYS 616 1_555 B SG CYS 83 B CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASN 143 A ASN 678 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc2 C O1G ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 C O2B ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 C O2A ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc5 D MG MG . A MG 902 1_555 H O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B OD1 ASN 143 B ASN 678 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 E O3G ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc8 E O2B ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc9 E O2A ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc10 G MG MG . B MG 903 1_555 I O HOH . B HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc11 G MG MG . B MG 903 1_555 I O HOH . B HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8C08 _atom_sites.fract_transf_matrix[1][1] 0.021342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 901 901 ATP ATP . D 3 MG A 1 902 3 MG MG . E 2 ATP B 1 901 901 ATP ATP . F 4 GOL B 1 902 902 GOL GOL . G 3 MG B 1 903 2 MG MG . H 5 HOH A 1 1001 88 HOH HOH . H 5 HOH A 2 1002 46 HOH HOH . H 5 HOH A 3 1003 121 HOH HOH . H 5 HOH A 4 1004 43 HOH HOH . H 5 HOH A 5 1005 81 HOH HOH . H 5 HOH A 6 1006 124 HOH HOH . H 5 HOH A 7 1007 71 HOH HOH . H 5 HOH A 8 1008 52 HOH HOH . H 5 HOH A 9 1009 61 HOH HOH . H 5 HOH A 10 1010 47 HOH HOH . H 5 HOH A 11 1011 105 HOH HOH . H 5 HOH A 12 1012 76 HOH HOH . H 5 HOH A 13 1013 51 HOH HOH . H 5 HOH A 14 1014 70 HOH HOH . H 5 HOH A 15 1015 63 HOH HOH . H 5 HOH A 16 1016 66 HOH HOH . H 5 HOH A 17 1017 55 HOH HOH . H 5 HOH A 18 1018 110 HOH HOH . H 5 HOH A 19 1019 58 HOH HOH . H 5 HOH A 20 1020 78 HOH HOH . H 5 HOH A 21 1021 45 HOH HOH . H 5 HOH A 22 1022 64 HOH HOH . H 5 HOH A 23 1023 22 HOH HOH . H 5 HOH A 24 1024 60 HOH HOH . H 5 HOH A 25 1025 118 HOH HOH . H 5 HOH A 26 1026 73 HOH HOH . H 5 HOH A 27 1027 126 HOH HOH . H 5 HOH A 28 1028 67 HOH HOH . I 5 HOH B 1 1001 56 HOH HOH . I 5 HOH B 2 1002 23 HOH HOH . I 5 HOH B 3 1003 129 HOH HOH . I 5 HOH B 4 1004 12 HOH HOH . I 5 HOH B 5 1005 53 HOH HOH . I 5 HOH B 6 1006 49 HOH HOH . I 5 HOH B 7 1007 14 HOH HOH . I 5 HOH B 8 1008 18 HOH HOH . I 5 HOH B 9 1009 6 HOH HOH . I 5 HOH B 10 1010 1 HOH HOH . I 5 HOH B 11 1011 9 HOH HOH . I 5 HOH B 12 1012 2 HOH HOH . I 5 HOH B 13 1013 36 HOH HOH . I 5 HOH B 14 1014 128 HOH HOH . I 5 HOH B 15 1015 39 HOH HOH . I 5 HOH B 16 1016 15 HOH HOH . I 5 HOH B 17 1017 27 HOH HOH . I 5 HOH B 18 1018 24 HOH HOH . I 5 HOH B 19 1019 77 HOH HOH . I 5 HOH B 20 1020 94 HOH HOH . I 5 HOH B 21 1021 50 HOH HOH . I 5 HOH B 22 1022 30 HOH HOH . I 5 HOH B 23 1023 130 HOH HOH . I 5 HOH B 24 1024 21 HOH HOH . I 5 HOH B 25 1025 90 HOH HOH . I 5 HOH B 26 1026 5 HOH HOH . I 5 HOH B 27 1027 29 HOH HOH . I 5 HOH B 28 1028 7 HOH HOH . I 5 HOH B 29 1029 123 HOH HOH . I 5 HOH B 30 1030 59 HOH HOH . I 5 HOH B 31 1031 13 HOH HOH . I 5 HOH B 32 1032 95 HOH HOH . I 5 HOH B 33 1033 34 HOH HOH . I 5 HOH B 34 1034 91 HOH HOH . I 5 HOH B 35 1035 33 HOH HOH . I 5 HOH B 36 1036 80 HOH HOH . I 5 HOH B 37 1037 31 HOH HOH . I 5 HOH B 38 1038 101 HOH HOH . I 5 HOH B 39 1039 127 HOH HOH . I 5 HOH B 40 1040 75 HOH HOH . I 5 HOH B 41 1041 25 HOH HOH . I 5 HOH B 42 1042 26 HOH HOH . I 5 HOH B 43 1043 4 HOH HOH . I 5 HOH B 44 1044 32 HOH HOH . I 5 HOH B 45 1045 107 HOH HOH . I 5 HOH B 46 1046 83 HOH HOH . I 5 HOH B 47 1047 104 HOH HOH . I 5 HOH B 48 1048 38 HOH HOH . I 5 HOH B 49 1049 44 HOH HOH . I 5 HOH B 50 1050 69 HOH HOH . I 5 HOH B 51 1051 96 HOH HOH . I 5 HOH B 52 1052 84 HOH HOH . I 5 HOH B 53 1053 37 HOH HOH . I 5 HOH B 54 1054 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 48.321 -10.593 27.091 1 57.3 ? PG ATP 901 B 1 HETATM 2 O O1G ATP . . . E 2 49.78 -10.523 26.816 1 65.67 ? O1G ATP 901 B 1 HETATM 3 O O2G ATP . . . E 2 47.475 -10.446 25.83 1 43.19 ? O2G ATP 901 B 1 HETATM 4 O O3G ATP . . . E 2 47.913 -11.859 27.843 1 54.45 ? O3G ATP 901 B 1 HETATM 5 P PB ATP . . . E 2 46.596 -8.39 28.224 1 54.03 ? PB ATP 901 B 1 HETATM 6 O O1B ATP . . . E 2 46.751 -7.15 27.445 1 56.95 ? O1B ATP 901 B 1 HETATM 7 O O2B ATP . . . E 2 45.328 -9.174 27.91 1 55.24 ? O2B ATP 901 B 1 HETATM 8 O O3B ATP . . . E 2 47.843 -9.385 28.04 1 52.63 ? O3B ATP 901 B 1 HETATM 9 P PA ATP . . . E 2 47.271 -8.839 31.049 1 46.27 ? PA ATP 901 B 1 HETATM 10 O O1A ATP . . . E 2 48.739 -8.694 31.018 1 59.99 ? O1A ATP 901 B 1 HETATM 11 O O2A ATP . . . E 2 46.797 -10.291 31.094 1 47.89 ? O2A ATP 901 B 1 HETATM 12 O O3A ATP . . . E 2 46.604 -8.154 29.796 1 35.71 ? O3A ATP 901 B 1 HETATM 13 O O5' ATP . . . E 2 46.641 -8.096 32.29 1 42.23 ? O5' ATP 901 B 1 HETATM 14 C C5' ATP . . . E 2 46.94 -8.515 33.639 1 52.37 ? C5' ATP 901 B 1 HETATM 15 C C4' ATP . . . E 2 46.12 -7.703 34.617 1 49.99 ? C4' ATP 901 B 1 HETATM 16 O O4' ATP . . . E 2 44.815 -7.531 34.027 1 50.12 ? O4' ATP 901 B 1 HETATM 17 C C3' ATP . . . E 2 45.87 -8.49 35.903 1 52.39 ? C3' ATP 901 B 1 HETATM 18 O O3' ATP . . . E 2 45.544 -7.575 36.947 1 57.6 ? O3' ATP 901 B 1 HETATM 19 C C2' ATP . . . E 2 44.535 -9.173 35.619 1 53.46 ? C2' ATP 901 B 1 HETATM 20 O O2' ATP . . . E 2 43.863 -9.317 36.868 1 57.6 ? O2' ATP 901 B 1 HETATM 21 C C1' ATP . . . E 2 43.829 -8.037 34.897 1 48.37 ? C1' ATP 901 B 1 HETATM 22 N N9 ATP . . . E 2 42.747 -8.53 34.058 1 43.51 ? N9 ATP 901 B 1 HETATM 23 C C8 ATP . . . E 2 42.818 -8.869 32.732 1 45.75 ? C8 ATP 901 B 1 HETATM 24 N N7 ATP . . . E 2 41.685 -9.287 32.225 1 45.82 ? N7 ATP 901 B 1 HETATM 25 C C5 ATP . . . E 2 40.804 -9.224 33.296 1 44.18 ? C5 ATP 901 B 1 HETATM 26 C C6 ATP . . . E 2 39.436 -9.536 33.423 1 40.74 ? C6 ATP 901 B 1 HETATM 27 N N6 ATP . . . E 2 38.68 -9.984 32.415 1 40.17 ? N6 ATP 901 B 1 HETATM 28 N N1 ATP . . . E 2 38.857 -9.354 34.633 1 39.43 ? N1 ATP 901 B 1 HETATM 29 C C2 ATP . . . E 2 39.607 -8.899 35.64 1 45.97 ? C2 ATP 901 B 1 HETATM 30 N N3 ATP . . . E 2 40.901 -8.575 35.641 1 48.2 ? N3 ATP 901 B 1 HETATM 31 C C4 ATP . . . E 2 41.446 -8.76 34.433 1 42.72 ? C4 ATP 901 B 1 HETATM 32 H "H5'1" ATP . . . E 2 46.724 -9.455 33.742 1 62.93 ? "H5'1" ATP 901 B 1 HETATM 33 H "H5'2" ATP . . . E 2 47.883 -8.377 33.819 1 62.93 ? "H5'2" ATP 901 B 1 HETATM 34 H H4' ATP . . . E 2 46.508 -6.835 34.809 1 60.08 ? H4' ATP 901 B 1 HETATM 35 H H3' ATP . . . E 2 46.619 -9.085 36.066 1 62.96 ? H3' ATP 901 B 1 HETATM 36 H HO3' ATP . . . E 2 44.861 -7.889 37.35 1 69.21 ? HO3' ATP 901 B 1 HETATM 37 H H2' ATP . . . E 2 44.614 -9.985 35.094 1 64.24 ? H2' ATP 901 B 1 HETATM 38 H HO2' ATP . . . E 2 43.074 -9.595 36.712 1 69.21 ? HO2' ATP 901 B 1 HETATM 39 H H1' ATP . . . E 2 43.511 -7.356 35.511 1 58.14 ? H1' ATP 901 B 1 HETATM 40 H H8 ATP . . . E 2 43.602 -8.807 32.236 1 54.99 ? H8 ATP 901 B 1 HETATM 41 H HN61 ATP . . . E 2 38.567 -9.496 31.715 1 48.29 ? HN61 ATP 901 B 1 HETATM 42 H HN62 ATP . . . E 2 38.305 -10.755 32.465 1 48.29 ? HN62 ATP 901 B 1 HETATM 43 H H2 ATP . . . E 2 39.166 -8.793 36.453 1 55.25 ? H2 ATP 901 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #