data_8C08 # _model_server_result.job_id t8JzYu_EfeaSG3aijWi5Gw _model_server_result.datetime_utc '2024-11-08 09:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 8C08 # _exptl.entry_id 8C08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C08 _cell.length_a 46.857 _cell.length_b 46.857 _cell.length_c 309.461 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 616 1_555 A SG CYS 83 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 81 B CYS 616 1_555 B SG CYS 83 B CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASN 143 A ASN 678 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc2 C O1G ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 C O2B ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 C O2A ATP . A ATP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc5 D MG MG . A MG 902 1_555 H O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B OD1 ASN 143 B ASN 678 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 E O3G ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc8 E O2B ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc9 E O2A ATP . B ATP 901 1_555 G MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc10 G MG MG . B MG 903 1_555 I O HOH . B HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc11 G MG MG . B MG 903 1_555 I O HOH . B HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 8C08 _atom_sites.fract_transf_matrix[1][1] 0.021342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 901 901 ATP ATP . D 3 MG A 1 902 3 MG MG . E 2 ATP B 1 901 901 ATP ATP . F 4 GOL B 1 902 902 GOL GOL . G 3 MG B 1 903 2 MG MG . H 5 HOH A 1 1001 88 HOH HOH . H 5 HOH A 2 1002 46 HOH HOH . H 5 HOH A 3 1003 121 HOH HOH . H 5 HOH A 4 1004 43 HOH HOH . H 5 HOH A 5 1005 81 HOH HOH . H 5 HOH A 6 1006 124 HOH HOH . H 5 HOH A 7 1007 71 HOH HOH . H 5 HOH A 8 1008 52 HOH HOH . H 5 HOH A 9 1009 61 HOH HOH . H 5 HOH A 10 1010 47 HOH HOH . H 5 HOH A 11 1011 105 HOH HOH . H 5 HOH A 12 1012 76 HOH HOH . H 5 HOH A 13 1013 51 HOH HOH . H 5 HOH A 14 1014 70 HOH HOH . H 5 HOH A 15 1015 63 HOH HOH . H 5 HOH A 16 1016 66 HOH HOH . H 5 HOH A 17 1017 55 HOH HOH . H 5 HOH A 18 1018 110 HOH HOH . H 5 HOH A 19 1019 58 HOH HOH . H 5 HOH A 20 1020 78 HOH HOH . H 5 HOH A 21 1021 45 HOH HOH . H 5 HOH A 22 1022 64 HOH HOH . H 5 HOH A 23 1023 22 HOH HOH . H 5 HOH A 24 1024 60 HOH HOH . H 5 HOH A 25 1025 118 HOH HOH . H 5 HOH A 26 1026 73 HOH HOH . H 5 HOH A 27 1027 126 HOH HOH . H 5 HOH A 28 1028 67 HOH HOH . I 5 HOH B 1 1001 56 HOH HOH . I 5 HOH B 2 1002 23 HOH HOH . I 5 HOH B 3 1003 129 HOH HOH . I 5 HOH B 4 1004 12 HOH HOH . I 5 HOH B 5 1005 53 HOH HOH . I 5 HOH B 6 1006 49 HOH HOH . I 5 HOH B 7 1007 14 HOH HOH . I 5 HOH B 8 1008 18 HOH HOH . I 5 HOH B 9 1009 6 HOH HOH . I 5 HOH B 10 1010 1 HOH HOH . I 5 HOH B 11 1011 9 HOH HOH . I 5 HOH B 12 1012 2 HOH HOH . I 5 HOH B 13 1013 36 HOH HOH . I 5 HOH B 14 1014 128 HOH HOH . I 5 HOH B 15 1015 39 HOH HOH . I 5 HOH B 16 1016 15 HOH HOH . I 5 HOH B 17 1017 27 HOH HOH . I 5 HOH B 18 1018 24 HOH HOH . I 5 HOH B 19 1019 77 HOH HOH . I 5 HOH B 20 1020 94 HOH HOH . I 5 HOH B 21 1021 50 HOH HOH . I 5 HOH B 22 1022 30 HOH HOH . I 5 HOH B 23 1023 130 HOH HOH . I 5 HOH B 24 1024 21 HOH HOH . I 5 HOH B 25 1025 90 HOH HOH . I 5 HOH B 26 1026 5 HOH HOH . I 5 HOH B 27 1027 29 HOH HOH . I 5 HOH B 28 1028 7 HOH HOH . I 5 HOH B 29 1029 123 HOH HOH . I 5 HOH B 30 1030 59 HOH HOH . I 5 HOH B 31 1031 13 HOH HOH . I 5 HOH B 32 1032 95 HOH HOH . I 5 HOH B 33 1033 34 HOH HOH . I 5 HOH B 34 1034 91 HOH HOH . I 5 HOH B 35 1035 33 HOH HOH . I 5 HOH B 36 1036 80 HOH HOH . I 5 HOH B 37 1037 31 HOH HOH . I 5 HOH B 38 1038 101 HOH HOH . I 5 HOH B 39 1039 127 HOH HOH . I 5 HOH B 40 1040 75 HOH HOH . I 5 HOH B 41 1041 25 HOH HOH . I 5 HOH B 42 1042 26 HOH HOH . I 5 HOH B 43 1043 4 HOH HOH . I 5 HOH B 44 1044 32 HOH HOH . I 5 HOH B 45 1045 107 HOH HOH . I 5 HOH B 46 1046 83 HOH HOH . I 5 HOH B 47 1047 104 HOH HOH . I 5 HOH B 48 1048 38 HOH HOH . I 5 HOH B 49 1049 44 HOH HOH . I 5 HOH B 50 1050 69 HOH HOH . I 5 HOH B 51 1051 96 HOH HOH . I 5 HOH B 52 1052 84 HOH HOH . I 5 HOH B 53 1053 37 HOH HOH . I 5 HOH B 54 1054 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 52.905 -15.422 29.901 1 45.44 ? C1 GOL 902 B 1 HETATM 2 O O1 GOL . . . F 4 53.634 -14.65 30.81 1 53.47 ? O1 GOL 902 B 1 HETATM 3 C C2 GOL . . . F 4 53.291 -14.95 28.481 1 48.88 ? C2 GOL 902 B 1 HETATM 4 O O2 GOL . . . F 4 52.764 -15.78 27.502 1 45 ? O2 GOL 902 B 1 HETATM 5 C C3 GOL . . . F 4 52.756 -13.505 28.364 1 64.75 ? C3 GOL 902 B 1 HETATM 6 O O3 GOL . . . F 4 51.471 -13.589 27.819 1 66.84 ? O3 GOL 902 B 1 HETATM 7 H H11 GOL . . . F 4 51.946 -15.329 30.019 1 54.62 ? H11 GOL 902 B 1 HETATM 8 H H12 GOL . . . F 4 53.092 -16.371 29.984 1 54.62 ? H12 GOL 902 B 1 HETATM 9 H HO1 GOL . . . F 4 53.493 -14.983 31.581 1 64.26 ? HO1 GOL 902 B 1 HETATM 10 H H2 GOL . . . F 4 54.255 -14.968 28.371 1 58.75 ? H2 GOL 902 B 1 HETATM 11 H HO2 GOL . . . F 4 51.982 -15.5 27.315 1 54.09 ? HO2 GOL 902 B 1 HETATM 12 H H31 GOL . . . F 4 53.37 -12.985 27.822 1 77.79 ? H31 GOL 902 B 1 HETATM 13 H H32 GOL . . . F 4 52.775 -13.091 29.241 1 77.79 ? H32 GOL 902 B 1 HETATM 14 H HO3 GOL . . . F 4 51.306 -12.832 27.463 1 80.3 ? HO3 GOL 902 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #