data_8C0S
#
_model_server_result.job_id            GQRIlTtgUlQDaIWOiVk3dw 
_model_server_result.datetime_utc      '2024-12-22 03:22:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8C0S 
#
_exptl.entry_id    8C0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.287 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[[2,4-bis(trifluoromethyl)phenyl]methyl]-5-(hydroxymethyl)-1~{H}-imidazole-2-thione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.454 
_cell.angle_gamma         90 
_cell.entry_id            8C0S 
_cell.length_a            47.027 
_cell.length_b            107.943 
_cell.length_c            56.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H10 F6 N2 O S' 
_chem_comp.formula_weight    356.287 
_chem_comp.id                SYU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[[2,4-bis(trifluoromethyl)phenyl]methyl]-5-(hydroxymethyl)-1~{H}-imidazole-2-thione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 O01 SYU sing 277 n n 
C13 C02 SYU sing 278 n n 
C02 N01 SYU sing 279 n n 
C02 C03 SYU doub 280 n n 
F13 C12 SYU sing 281 n n 
N01 C05 SYU sing 282 n n 
C09 C08 SYU doub 283 n y 
C09 C04 SYU sing 284 n y 
F14 C12 SYU sing 285 n n 
C08 C07 SYU sing 286 n y 
C03 N02 SYU sing 287 n n 
C05 S02 SYU doub 288 n n 
C05 N02 SYU sing 289 n n 
C12 C04 SYU sing 290 n n 
C12 F15 SYU sing 291 n n 
C04 C10 SYU doub 292 n y 
N02 C01 SYU sing 293 n n 
C07 C01 SYU sing 294 n n 
C07 C06 SYU doub 295 n y 
C10 C06 SYU sing 296 n y 
C06 C11 SYU sing 297 n n 
F03 C11 SYU sing 298 n n 
C11 F02 SYU sing 299 n n 
C11 F01 SYU sing 300 n n 
C13 H1 SYU sing 301 n n 
C13 H2 SYU sing 302 n n 
C10 H3 SYU sing 303 n n 
C01 H4 SYU sing 304 n n 
C01 H5 SYU sing 305 n n 
O01 H6 SYU sing 306 n n 
C03 H7 SYU sing 307 n n 
C08 H9 SYU sing 308 n n 
C09 H10 SYU sing 309 n n 
N01 H11 SYU sing 310 n n 
#
_atom_sites.entry_id                     8C0S 
_atom_sites.fract_transf_matrix[1][1]    0.021264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007511 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SYU A 1 601 601 SYU SPP . 
D 2 SYU B 1 601 601 SYU SPP . 
E 3 HOH A 1 701 32 HOH HOH . 
E 3 HOH A 2 702 2 HOH HOH . 
E 3 HOH A 3 703 4 HOH HOH . 
E 3 HOH A 4 704 77 HOH HOH . 
E 3 HOH A 5 705 5 HOH HOH . 
E 3 HOH A 6 706 28 HOH HOH . 
E 3 HOH A 7 707 78 HOH HOH . 
E 3 HOH A 8 708 3 HOH HOH . 
E 3 HOH A 9 709 29 HOH HOH . 
E 3 HOH A 10 710 56 HOH HOH . 
E 3 HOH A 11 711 43 HOH HOH . 
E 3 HOH A 12 712 11 HOH HOH . 
E 3 HOH A 13 713 14 HOH HOH . 
E 3 HOH A 14 714 54 HOH HOH . 
E 3 HOH A 15 715 63 HOH HOH . 
E 3 HOH A 16 716 27 HOH HOH . 
E 3 HOH A 17 717 13 HOH HOH . 
E 3 HOH A 18 718 35 HOH HOH . 
E 3 HOH A 19 719 33 HOH HOH . 
E 3 HOH A 20 720 65 HOH HOH . 
E 3 HOH A 21 721 20 HOH HOH . 
E 3 HOH A 22 722 37 HOH HOH . 
E 3 HOH A 23 723 21 HOH HOH . 
E 3 HOH A 24 724 60 HOH HOH . 
E 3 HOH A 25 725 62 HOH HOH . 
E 3 HOH A 26 726 83 HOH HOH . 
E 3 HOH A 27 727 55 HOH HOH . 
E 3 HOH A 28 728 82 HOH HOH . 
E 3 HOH A 29 729 80 HOH HOH . 
E 3 HOH A 30 730 9 HOH HOH . 
E 3 HOH A 31 731 44 HOH HOH . 
E 3 HOH A 32 732 61 HOH HOH . 
E 3 HOH A 33 733 23 HOH HOH . 
E 3 HOH A 34 734 53 HOH HOH . 
E 3 HOH A 35 735 69 HOH HOH . 
E 3 HOH A 36 736 10 HOH HOH . 
E 3 HOH A 37 737 81 HOH HOH . 
E 3 HOH A 38 738 51 HOH HOH . 
E 3 HOH A 39 739 47 HOH HOH . 
F 3 HOH B 1 701 49 HOH HOH . 
F 3 HOH B 2 702 1 HOH HOH . 
F 3 HOH B 3 703 31 HOH HOH . 
F 3 HOH B 4 704 8 HOH HOH . 
F 3 HOH B 5 705 79 HOH HOH . 
F 3 HOH B 6 706 15 HOH HOH . 
F 3 HOH B 7 707 70 HOH HOH . 
F 3 HOH B 8 708 6 HOH HOH . 
F 3 HOH B 9 709 72 HOH HOH . 
F 3 HOH B 10 710 25 HOH HOH . 
F 3 HOH B 11 711 7 HOH HOH . 
F 3 HOH B 12 712 58 HOH HOH . 
F 3 HOH B 13 713 68 HOH HOH . 
F 3 HOH B 14 714 45 HOH HOH . 
F 3 HOH B 15 715 19 HOH HOH . 
F 3 HOH B 16 716 66 HOH HOH . 
F 3 HOH B 17 717 46 HOH HOH . 
F 3 HOH B 18 718 36 HOH HOH . 
F 3 HOH B 19 719 18 HOH HOH . 
F 3 HOH B 20 720 39 HOH HOH . 
F 3 HOH B 21 721 38 HOH HOH . 
F 3 HOH B 22 722 52 HOH HOH . 
F 3 HOH B 23 723 41 HOH HOH . 
F 3 HOH B 24 724 64 HOH HOH . 
F 3 HOH B 25 725 26 HOH HOH . 
F 3 HOH B 26 726 24 HOH HOH . 
F 3 HOH B 27 727 84 HOH HOH . 
F 3 HOH B 28 728 22 HOH HOH . 
F 3 HOH B 29 729 57 HOH HOH . 
F 3 HOH B 30 730 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 SYU . . . D 2 37.529 -12.546 34.683 0.75 67.46 0 C13 SYU 601 B 1 
HETATM 2 C C01 SYU . . . D 2 38.186 -9.076 31.089 0.75 94.92 0 C01 SYU 601 B 1 
HETATM 3 N N01 SYU . . . D 2 38.505 -12.409 32.416 0.75 75.46 0 N01 SYU 601 B 1 
HETATM 4 O O01 SYU . . . D 2 37.224 -13.894 34.39 0.75 60.69 0 O01 SYU 601 B 1 
HETATM 5 C C02 SYU . . . D 2 37.877 -11.803 33.466 0.75 72.74 0 C02 SYU 601 B 1 
HETATM 6 N N02 SYU . . . D 2 38.2 -10.351 31.83 0.75 84.22 0 N02 SYU 601 B 1 
HETATM 7 S S02 SYU . . . D 2 39.484 -11.819 30.01 0.75 78.99 0 S02 SYU 601 B 1 
HETATM 8 C C03 SYU . . . D 2 37.659 -10.502 33.094 0.75 85.17 0 C03 SYU 601 B 1 
HETATM 9 C C05 SYU . . . D 2 38.709 -11.519 31.413 0.75 74.43 0 C05 SYU 601 B 1 
HETATM 10 C C07 SYU . . . D 2 39.561 -8.645 30.615 0.75 93.67 0 C07 SYU 601 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#