data_8C0U
#
_model_server_result.job_id            PokqyBfOHPJ-q31PwnIp7w 
_model_server_result.datetime_utc      '2025-07-04 20:42:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c0u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    8C0U 
#
_exptl.entry_id    8C0U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C0U 
_cell.length_a            90.583 
_cell.length_b            90.583 
_cell.length_c            174.478 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C0U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8C0U 
_atom_sites.fract_transf_matrix[1][1]    0.01104 
_atom_sites.fract_transf_matrix[1][2]    0.006374 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 401 364 ADP ADP . 
D 3 AH0 A 1 402 365 AH0 AH0 . 
E 2 ADP B 1 401 364 ADP ADP . 
F 4 VW0 B 1 402 365 VW0 J79 . 
G 5 HOH A 1 501 89 HOH HOH . 
G 5 HOH A 2 502 5 HOH HOH . 
G 5 HOH A 3 503 121 HOH HOH . 
G 5 HOH A 4 504 108 HOH HOH . 
G 5 HOH A 5 505 72 HOH HOH . 
G 5 HOH A 6 506 174 HOH HOH . 
G 5 HOH A 7 507 105 HOH HOH . 
G 5 HOH A 8 508 42 HOH HOH . 
G 5 HOH A 9 509 99 HOH HOH . 
G 5 HOH A 10 510 48 HOH HOH . 
G 5 HOH A 11 511 10 HOH HOH . 
G 5 HOH A 12 512 49 HOH HOH . 
G 5 HOH A 13 513 29 HOH HOH . 
G 5 HOH A 14 514 2 HOH HOH . 
G 5 HOH A 15 515 13 HOH HOH . 
G 5 HOH A 16 516 113 HOH HOH . 
G 5 HOH A 17 517 9 HOH HOH . 
G 5 HOH A 18 518 47 HOH HOH . 
G 5 HOH A 19 519 19 HOH HOH . 
G 5 HOH A 20 520 61 HOH HOH . 
G 5 HOH A 21 521 90 HOH HOH . 
G 5 HOH A 22 522 79 HOH HOH . 
G 5 HOH A 23 523 159 HOH HOH . 
G 5 HOH A 24 524 51 HOH HOH . 
G 5 HOH A 25 525 21 HOH HOH . 
G 5 HOH A 26 526 52 HOH HOH . 
G 5 HOH A 27 527 158 HOH HOH . 
G 5 HOH A 28 528 56 HOH HOH . 
G 5 HOH A 29 529 92 HOH HOH . 
G 5 HOH A 30 530 14 HOH HOH . 
G 5 HOH A 31 531 171 HOH HOH . 
G 5 HOH A 32 532 161 HOH HOH . 
G 5 HOH A 33 533 130 HOH HOH . 
G 5 HOH A 34 534 110 HOH HOH . 
G 5 HOH A 35 535 43 HOH HOH . 
G 5 HOH A 36 536 11 HOH HOH . 
G 5 HOH A 37 537 135 HOH HOH . 
G 5 HOH A 38 538 111 HOH HOH . 
G 5 HOH A 39 539 6 HOH HOH . 
G 5 HOH A 40 540 146 HOH HOH . 
G 5 HOH A 41 541 81 HOH HOH . 
G 5 HOH A 42 542 93 HOH HOH . 
G 5 HOH A 43 543 101 HOH HOH . 
G 5 HOH A 44 544 87 HOH HOH . 
G 5 HOH A 45 545 147 HOH HOH . 
G 5 HOH A 46 546 112 HOH HOH . 
G 5 HOH A 47 547 66 HOH HOH . 
G 5 HOH A 48 548 152 HOH HOH . 
G 5 HOH A 49 549 25 HOH HOH . 
G 5 HOH A 50 550 33 HOH HOH . 
G 5 HOH A 51 551 74 HOH HOH . 
G 5 HOH A 52 552 125 HOH HOH . 
G 5 HOH A 53 553 157 HOH HOH . 
G 5 HOH A 54 554 151 HOH HOH . 
G 5 HOH A 55 555 24 HOH HOH . 
G 5 HOH A 56 556 62 HOH HOH . 
G 5 HOH A 57 557 88 HOH HOH . 
G 5 HOH A 58 558 94 HOH HOH . 
G 5 HOH A 59 559 64 HOH HOH . 
G 5 HOH A 60 560 69 HOH HOH . 
G 5 HOH A 61 561 80 HOH HOH . 
G 5 HOH A 62 562 172 HOH HOH . 
G 5 HOH A 63 563 23 HOH HOH . 
G 5 HOH A 64 564 37 HOH HOH . 
G 5 HOH A 65 565 137 HOH HOH . 
G 5 HOH A 66 566 139 HOH HOH . 
G 5 HOH A 67 567 145 HOH HOH . 
G 5 HOH A 68 568 117 HOH HOH . 
G 5 HOH A 69 569 160 HOH HOH . 
G 5 HOH A 70 570 132 HOH HOH . 
G 5 HOH A 71 571 40 HOH HOH . 
G 5 HOH A 72 572 164 HOH HOH . 
G 5 HOH A 73 573 77 HOH HOH . 
G 5 HOH A 74 574 163 HOH HOH . 
G 5 HOH A 75 575 82 HOH HOH . 
G 5 HOH A 76 576 169 HOH HOH . 
G 5 HOH A 77 577 116 HOH HOH . 
G 5 HOH A 78 578 20 HOH HOH . 
G 5 HOH A 79 579 86 HOH HOH . 
G 5 HOH A 80 580 156 HOH HOH . 
G 5 HOH A 81 581 123 HOH HOH . 
G 5 HOH A 82 582 35 HOH HOH . 
G 5 HOH A 83 583 50 HOH HOH . 
G 5 HOH A 84 584 131 HOH HOH . 
G 5 HOH A 85 585 120 HOH HOH . 
G 5 HOH A 86 586 58 HOH HOH . 
G 5 HOH A 87 587 68 HOH HOH . 
G 5 HOH A 88 588 98 HOH HOH . 
G 5 HOH A 89 589 85 HOH HOH . 
G 5 HOH A 90 590 162 HOH HOH . 
G 5 HOH A 91 591 114 HOH HOH . 
G 5 HOH A 92 592 165 HOH HOH . 
H 5 HOH B 1 501 109 HOH HOH . 
H 5 HOH B 2 502 129 HOH HOH . 
H 5 HOH B 3 503 32 HOH HOH . 
H 5 HOH B 4 504 84 HOH HOH . 
H 5 HOH B 5 505 34 HOH HOH . 
H 5 HOH B 6 506 41 HOH HOH . 
H 5 HOH B 7 507 31 HOH HOH . 
H 5 HOH B 8 508 115 HOH HOH . 
H 5 HOH B 9 509 96 HOH HOH . 
H 5 HOH B 10 510 173 HOH HOH . 
H 5 HOH B 11 511 91 HOH HOH . 
H 5 HOH B 12 512 78 HOH HOH . 
H 5 HOH B 13 513 65 HOH HOH . 
H 5 HOH B 14 514 7 HOH HOH . 
H 5 HOH B 15 515 60 HOH HOH . 
H 5 HOH B 16 516 73 HOH HOH . 
H 5 HOH B 17 517 38 HOH HOH . 
H 5 HOH B 18 518 149 HOH HOH . 
H 5 HOH B 19 519 45 HOH HOH . 
H 5 HOH B 20 520 63 HOH HOH . 
H 5 HOH B 21 521 122 HOH HOH . 
H 5 HOH B 22 522 54 HOH HOH . 
H 5 HOH B 23 523 4 HOH HOH . 
H 5 HOH B 24 524 133 HOH HOH . 
H 5 HOH B 25 525 71 HOH HOH . 
H 5 HOH B 26 526 140 HOH HOH . 
H 5 HOH B 27 527 119 HOH HOH . 
H 5 HOH B 28 528 3 HOH HOH . 
H 5 HOH B 29 529 100 HOH HOH . 
H 5 HOH B 30 530 17 HOH HOH . 
H 5 HOH B 31 531 76 HOH HOH . 
H 5 HOH B 32 532 15 HOH HOH . 
H 5 HOH B 33 533 44 HOH HOH . 
H 5 HOH B 34 534 1 HOH HOH . 
H 5 HOH B 35 535 138 HOH HOH . 
H 5 HOH B 36 536 16 HOH HOH . 
H 5 HOH B 37 537 153 HOH HOH . 
H 5 HOH B 38 538 118 HOH HOH . 
H 5 HOH B 39 539 59 HOH HOH . 
H 5 HOH B 40 540 104 HOH HOH . 
H 5 HOH B 41 541 8 HOH HOH . 
H 5 HOH B 42 542 83 HOH HOH . 
H 5 HOH B 43 543 30 HOH HOH . 
H 5 HOH B 44 544 70 HOH HOH . 
H 5 HOH B 45 545 22 HOH HOH . 
H 5 HOH B 46 546 12 HOH HOH . 
H 5 HOH B 47 547 136 HOH HOH . 
H 5 HOH B 48 548 167 HOH HOH . 
H 5 HOH B 49 549 107 HOH HOH . 
H 5 HOH B 50 550 106 HOH HOH . 
H 5 HOH B 51 551 150 HOH HOH . 
H 5 HOH B 52 552 57 HOH HOH . 
H 5 HOH B 53 553 142 HOH HOH . 
H 5 HOH B 54 554 166 HOH HOH . 
H 5 HOH B 55 555 170 HOH HOH . 
H 5 HOH B 56 556 128 HOH HOH . 
H 5 HOH B 57 557 36 HOH HOH . 
H 5 HOH B 58 558 134 HOH HOH . 
H 5 HOH B 59 559 46 HOH HOH . 
H 5 HOH B 60 560 39 HOH HOH . 
H 5 HOH B 61 561 141 HOH HOH . 
H 5 HOH B 62 562 155 HOH HOH . 
H 5 HOH B 63 563 103 HOH HOH . 
H 5 HOH B 64 564 95 HOH HOH . 
H 5 HOH B 65 565 154 HOH HOH . 
H 5 HOH B 66 566 27 HOH HOH . 
H 5 HOH B 67 567 26 HOH HOH . 
H 5 HOH B 68 568 28 HOH HOH . 
H 5 HOH B 69 569 55 HOH HOH . 
H 5 HOH B 70 570 67 HOH HOH . 
H 5 HOH B 71 571 18 HOH HOH . 
H 5 HOH B 72 572 148 HOH HOH . 
H 5 HOH B 73 573 75 HOH HOH . 
H 5 HOH B 74 574 143 HOH HOH . 
H 5 HOH B 75 575 168 HOH HOH . 
H 5 HOH B 76 576 102 HOH HOH . 
H 5 HOH B 77 577 127 HOH HOH . 
H 5 HOH B 78 578 97 HOH HOH . 
H 5 HOH B 79 579 124 HOH HOH . 
H 5 HOH B 80 580 144 HOH HOH . 
H 5 HOH B 81 581 126 HOH HOH . 
H 5 HOH B 82 582 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 2 -34.219 11.872 -37.593 1 48.29 0 PB ADP 401 B 1 
HETATM 2 O O1B ADP . . . E 2 -32.784 12.31 -37.74 1 49.08 0 O1B ADP 401 B 1 
HETATM 3 O O2B ADP . . . E 2 -35.004 12.759 -36.643 1 48.16 0 O2B ADP 401 B 1 
HETATM 4 O O3B ADP . . . E 2 -34.353 10.403 -37.26 1 46.13 0 O3B ADP 401 B 1 
HETATM 5 P PA ADP . . . E 2 -36.427 12.017 -39.515 1 44.76 0 PA ADP 401 B 1 
HETATM 6 O O1A ADP . . . E 2 -36.703 10.722 -40.203 1 42.98 0 O1A ADP 401 B 1 
HETATM 7 O O2A ADP . . . E 2 -37.277 12.415 -38.354 1 43.76 0 O2A ADP 401 B 1 
HETATM 8 O O3A ADP . . . E 2 -34.895 12.044 -39.044 1 45.52 0 O3A ADP 401 B 1 
HETATM 9 O O5' ADP . . . E 2 -36.437 13.19 -40.606 1 42.49 0 O5' ADP 401 B 1 
HETATM 10 C C5' ADP . . . E 2 -36.609 14.564 -40.182 1 42.18 0 C5' ADP 401 B 1 
HETATM 11 C C4' ADP . . . E 2 -36.094 15.467 -41.276 1 43.25 0 C4' ADP 401 B 1 
HETATM 12 O O4' ADP . . . E 2 -36.872 15.246 -42.474 1 43.23 0 O4' ADP 401 B 1 
HETATM 13 C C3' ADP . . . E 2 -36.21 16.974 -41.041 1 43.38 0 C3' ADP 401 B 1 
HETATM 14 O O3' ADP . . . E 2 -35.114 17.432 -40.258 1 43.26 0 O3' ADP 401 B 1 
HETATM 15 C C2' ADP . . . E 2 -36.209 17.527 -42.473 1 43.05 0 C2' ADP 401 B 1 
HETATM 16 O O2' ADP . . . E 2 -34.928 17.829 -42.976 1 40.53 0 O2' ADP 401 B 1 
HETATM 17 C C1' ADP . . . E 2 -36.814 16.389 -43.293 1 44.78 0 C1' ADP 401 B 1 
HETATM 18 N N9 ADP . . . E 2 -38.155 16.697 -43.769 1 46.31 0 N9 ADP 401 B 1 
HETATM 19 C C8 ADP . . . E 2 -39.347 16.462 -43.128 1 46.63 0 C8 ADP 401 B 1 
HETATM 20 N N7 ADP . . . E 2 -40.387 16.881 -43.803 1 47.49 0 N7 ADP 401 B 1 
HETATM 21 C C5 ADP . . . E 2 -39.848 17.436 -44.957 1 48.81 0 C5 ADP 401 B 1 
HETATM 22 C C6 ADP . . . E 2 -40.434 18.059 -46.076 1 50.63 0 C6 ADP 401 B 1 
HETATM 23 N N6 ADP . . . E 2 -41.744 18.226 -46.23 1 52.66 0 N6 ADP 401 B 1 
HETATM 24 N N1 ADP . . . E 2 -39.604 18.507 -47.049 1 52.08 0 N1 ADP 401 B 1 
HETATM 25 C C2 ADP . . . E 2 -38.285 18.335 -46.894 1 54.14 0 C2 ADP 401 B 1 
HETATM 26 N N3 ADP . . . E 2 -37.623 17.77 -45.889 1 53.78 0 N3 ADP 401 B 1 
HETATM 27 C C4 ADP . . . E 2 -38.471 17.333 -44.942 1 48.96 0 C4 ADP 401 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#