data_8C0U # _model_server_result.job_id fqz7TMjT_SIDVe0vlFPJkg _model_server_result.datetime_utc '2025-07-07 21:53:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8C0U # _exptl.entry_id 8C0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.25 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C0U _cell.length_a 90.583 _cell.length_b 90.583 _cell.length_c 174.478 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N O11 P' _chem_comp.formula_weight 373.25 _chem_comp.id VW0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 O20 VW0 sing 457 n n C19 C18 VW0 sing 458 n n O24 P21 VW0 doub 459 n n O20 P21 VW0 sing 460 n n O23 P21 VW0 sing 461 n n C18 C02 VW0 sing 462 n n C18 O17 VW0 sing 463 n n P21 O22 VW0 sing 464 n n O01 C02 VW0 sing 465 n n C02 C03 VW0 sing 466 n n O08 C07 VW0 doub 467 n n O17 C15 VW0 sing 468 n n O02 C15 VW0 sing 469 n n C05 C07 VW0 sing 470 n n C05 O04 VW0 sing 471 n n C05 C06 VW0 sing 472 n n C07 O09 VW0 sing 473 n n C15 C10 VW0 sing 474 n n C03 O04 VW0 sing 475 n n C03 C10 VW0 sing 476 n n C10 N11 VW0 sing 477 n n N11 C12 VW0 sing 478 n n C12 O14 VW0 doub 479 n n C12 C13 VW0 sing 480 n n C02 H1 VW0 sing 481 n n C03 H2 VW0 sing 482 n n C05 H3 VW0 sing 483 n n C06 H4 VW0 sing 484 n n C06 H5 VW0 sing 485 n n C06 H6 VW0 sing 486 n n C10 H7 VW0 sing 487 n n C13 H8 VW0 sing 488 n n C13 H9 VW0 sing 489 n n C13 H10 VW0 sing 490 n n C15 H11 VW0 sing 491 n n C18 H12 VW0 sing 492 n n C19 H13 VW0 sing 493 n n C19 H14 VW0 sing 494 n n N11 H15 VW0 sing 495 n n O01 H16 VW0 sing 496 n n O09 H17 VW0 sing 497 n n O22 H18 VW0 sing 498 n n O23 H19 VW0 sing 499 n n O02 H20 VW0 sing 500 n n # _atom_sites.entry_id 8C0U _atom_sites.fract_transf_matrix[1][1] 0.01104 _atom_sites.fract_transf_matrix[1][2] 0.006374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 364 ADP ADP . D 3 AH0 A 1 402 365 AH0 AH0 . E 2 ADP B 1 401 364 ADP ADP . F 4 VW0 B 1 402 365 VW0 J79 . G 5 HOH A 1 501 89 HOH HOH . G 5 HOH A 2 502 5 HOH HOH . G 5 HOH A 3 503 121 HOH HOH . G 5 HOH A 4 504 108 HOH HOH . G 5 HOH A 5 505 72 HOH HOH . G 5 HOH A 6 506 174 HOH HOH . G 5 HOH A 7 507 105 HOH HOH . G 5 HOH A 8 508 42 HOH HOH . G 5 HOH A 9 509 99 HOH HOH . G 5 HOH A 10 510 48 HOH HOH . G 5 HOH A 11 511 10 HOH HOH . G 5 HOH A 12 512 49 HOH HOH . G 5 HOH A 13 513 29 HOH HOH . G 5 HOH A 14 514 2 HOH HOH . G 5 HOH A 15 515 13 HOH HOH . G 5 HOH A 16 516 113 HOH HOH . G 5 HOH A 17 517 9 HOH HOH . G 5 HOH A 18 518 47 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 61 HOH HOH . G 5 HOH A 21 521 90 HOH HOH . G 5 HOH A 22 522 79 HOH HOH . G 5 HOH A 23 523 159 HOH HOH . G 5 HOH A 24 524 51 HOH HOH . G 5 HOH A 25 525 21 HOH HOH . G 5 HOH A 26 526 52 HOH HOH . G 5 HOH A 27 527 158 HOH HOH . G 5 HOH A 28 528 56 HOH HOH . G 5 HOH A 29 529 92 HOH HOH . G 5 HOH A 30 530 14 HOH HOH . G 5 HOH A 31 531 171 HOH HOH . G 5 HOH A 32 532 161 HOH HOH . G 5 HOH A 33 533 130 HOH HOH . G 5 HOH A 34 534 110 HOH HOH . G 5 HOH A 35 535 43 HOH HOH . G 5 HOH A 36 536 11 HOH HOH . G 5 HOH A 37 537 135 HOH HOH . G 5 HOH A 38 538 111 HOH HOH . G 5 HOH A 39 539 6 HOH HOH . G 5 HOH A 40 540 146 HOH HOH . G 5 HOH A 41 541 81 HOH HOH . G 5 HOH A 42 542 93 HOH HOH . G 5 HOH A 43 543 101 HOH HOH . G 5 HOH A 44 544 87 HOH HOH . G 5 HOH A 45 545 147 HOH HOH . G 5 HOH A 46 546 112 HOH HOH . G 5 HOH A 47 547 66 HOH HOH . G 5 HOH A 48 548 152 HOH HOH . G 5 HOH A 49 549 25 HOH HOH . G 5 HOH A 50 550 33 HOH HOH . G 5 HOH A 51 551 74 HOH HOH . G 5 HOH A 52 552 125 HOH HOH . G 5 HOH A 53 553 157 HOH HOH . G 5 HOH A 54 554 151 HOH HOH . G 5 HOH A 55 555 24 HOH HOH . G 5 HOH A 56 556 62 HOH HOH . G 5 HOH A 57 557 88 HOH HOH . G 5 HOH A 58 558 94 HOH HOH . G 5 HOH A 59 559 64 HOH HOH . G 5 HOH A 60 560 69 HOH HOH . G 5 HOH A 61 561 80 HOH HOH . G 5 HOH A 62 562 172 HOH HOH . G 5 HOH A 63 563 23 HOH HOH . G 5 HOH A 64 564 37 HOH HOH . G 5 HOH A 65 565 137 HOH HOH . G 5 HOH A 66 566 139 HOH HOH . G 5 HOH A 67 567 145 HOH HOH . G 5 HOH A 68 568 117 HOH HOH . G 5 HOH A 69 569 160 HOH HOH . G 5 HOH A 70 570 132 HOH HOH . G 5 HOH A 71 571 40 HOH HOH . G 5 HOH A 72 572 164 HOH HOH . G 5 HOH A 73 573 77 HOH HOH . G 5 HOH A 74 574 163 HOH HOH . G 5 HOH A 75 575 82 HOH HOH . G 5 HOH A 76 576 169 HOH HOH . G 5 HOH A 77 577 116 HOH HOH . G 5 HOH A 78 578 20 HOH HOH . G 5 HOH A 79 579 86 HOH HOH . G 5 HOH A 80 580 156 HOH HOH . G 5 HOH A 81 581 123 HOH HOH . G 5 HOH A 82 582 35 HOH HOH . G 5 HOH A 83 583 50 HOH HOH . G 5 HOH A 84 584 131 HOH HOH . G 5 HOH A 85 585 120 HOH HOH . G 5 HOH A 86 586 58 HOH HOH . G 5 HOH A 87 587 68 HOH HOH . G 5 HOH A 88 588 98 HOH HOH . G 5 HOH A 89 589 85 HOH HOH . G 5 HOH A 90 590 162 HOH HOH . G 5 HOH A 91 591 114 HOH HOH . G 5 HOH A 92 592 165 HOH HOH . H 5 HOH B 1 501 109 HOH HOH . H 5 HOH B 2 502 129 HOH HOH . H 5 HOH B 3 503 32 HOH HOH . H 5 HOH B 4 504 84 HOH HOH . H 5 HOH B 5 505 34 HOH HOH . H 5 HOH B 6 506 41 HOH HOH . H 5 HOH B 7 507 31 HOH HOH . H 5 HOH B 8 508 115 HOH HOH . H 5 HOH B 9 509 96 HOH HOH . H 5 HOH B 10 510 173 HOH HOH . H 5 HOH B 11 511 91 HOH HOH . H 5 HOH B 12 512 78 HOH HOH . H 5 HOH B 13 513 65 HOH HOH . H 5 HOH B 14 514 7 HOH HOH . H 5 HOH B 15 515 60 HOH HOH . H 5 HOH B 16 516 73 HOH HOH . H 5 HOH B 17 517 38 HOH HOH . H 5 HOH B 18 518 149 HOH HOH . H 5 HOH B 19 519 45 HOH HOH . H 5 HOH B 20 520 63 HOH HOH . H 5 HOH B 21 521 122 HOH HOH . H 5 HOH B 22 522 54 HOH HOH . H 5 HOH B 23 523 4 HOH HOH . H 5 HOH B 24 524 133 HOH HOH . H 5 HOH B 25 525 71 HOH HOH . H 5 HOH B 26 526 140 HOH HOH . H 5 HOH B 27 527 119 HOH HOH . H 5 HOH B 28 528 3 HOH HOH . H 5 HOH B 29 529 100 HOH HOH . H 5 HOH B 30 530 17 HOH HOH . H 5 HOH B 31 531 76 HOH HOH . H 5 HOH B 32 532 15 HOH HOH . H 5 HOH B 33 533 44 HOH HOH . H 5 HOH B 34 534 1 HOH HOH . H 5 HOH B 35 535 138 HOH HOH . H 5 HOH B 36 536 16 HOH HOH . H 5 HOH B 37 537 153 HOH HOH . H 5 HOH B 38 538 118 HOH HOH . H 5 HOH B 39 539 59 HOH HOH . H 5 HOH B 40 540 104 HOH HOH . H 5 HOH B 41 541 8 HOH HOH . H 5 HOH B 42 542 83 HOH HOH . H 5 HOH B 43 543 30 HOH HOH . H 5 HOH B 44 544 70 HOH HOH . H 5 HOH B 45 545 22 HOH HOH . H 5 HOH B 46 546 12 HOH HOH . H 5 HOH B 47 547 136 HOH HOH . H 5 HOH B 48 548 167 HOH HOH . H 5 HOH B 49 549 107 HOH HOH . H 5 HOH B 50 550 106 HOH HOH . H 5 HOH B 51 551 150 HOH HOH . H 5 HOH B 52 552 57 HOH HOH . H 5 HOH B 53 553 142 HOH HOH . H 5 HOH B 54 554 166 HOH HOH . H 5 HOH B 55 555 170 HOH HOH . H 5 HOH B 56 556 128 HOH HOH . H 5 HOH B 57 557 36 HOH HOH . H 5 HOH B 58 558 134 HOH HOH . H 5 HOH B 59 559 46 HOH HOH . H 5 HOH B 60 560 39 HOH HOH . H 5 HOH B 61 561 141 HOH HOH . H 5 HOH B 62 562 155 HOH HOH . H 5 HOH B 63 563 103 HOH HOH . H 5 HOH B 64 564 95 HOH HOH . H 5 HOH B 65 565 154 HOH HOH . H 5 HOH B 66 566 27 HOH HOH . H 5 HOH B 67 567 26 HOH HOH . H 5 HOH B 68 568 28 HOH HOH . H 5 HOH B 69 569 55 HOH HOH . H 5 HOH B 70 570 67 HOH HOH . H 5 HOH B 71 571 18 HOH HOH . H 5 HOH B 72 572 148 HOH HOH . H 5 HOH B 73 573 75 HOH HOH . H 5 HOH B 74 574 143 HOH HOH . H 5 HOH B 75 575 168 HOH HOH . H 5 HOH B 76 576 102 HOH HOH . H 5 HOH B 77 577 127 HOH HOH . H 5 HOH B 78 578 97 HOH HOH . H 5 HOH B 79 579 124 HOH HOH . H 5 HOH B 80 580 144 HOH HOH . H 5 HOH B 81 581 126 HOH HOH . H 5 HOH B 82 582 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 VW0 . . . F 4 -28.409 6.426 -38.004 0.8 52.42 0 C02 VW0 402 B 1 HETATM 2 C C03 VW0 . . . F 4 -28.707 6.298 -36.471 0.8 51.19 0 C03 VW0 402 B 1 HETATM 3 C C05 VW0 . . . F 4 -30.877 5.103 -36.73 0.8 48.4 0 C05 VW0 402 B 1 HETATM 4 C C06 VW0 . . . F 4 -32.061 4.966 -35.794 0.8 48.36 0 C06 VW0 402 B 1 HETATM 5 C C07 VW0 . . . F 4 -30.027 3.817 -36.652 0.8 50.19 0 C07 VW0 402 B 1 HETATM 6 C C10 VW0 . . . F 4 -28.131 7.476 -35.625 0.8 49.75 0 C10 VW0 402 B 1 HETATM 7 C C12 VW0 . . . F 4 -26.807 7.404 -33.58 0.8 46.68 0 C12 VW0 402 B 1 HETATM 8 C C13 VW0 . . . F 4 -25.591 6.871 -32.901 0.8 45.38 0 C13 VW0 402 B 1 HETATM 9 C C15 VW0 . . . F 4 -27.74 8.648 -36.485 0.8 52.6 0 C15 VW0 402 B 1 HETATM 10 C C18 VW0 . . . F 4 -28.468 7.9 -38.521 0.8 52.56 0 C18 VW0 402 B 1 HETATM 11 C C19 VW0 . . . F 4 -29.57 8.153 -39.478 0.8 55.18 0 C19 VW0 402 B 1 HETATM 12 N N11 VW0 . . . F 4 -26.999 7.021 -34.851 0.8 47.14 0 N11 VW0 402 B 1 HETATM 13 O O01 VW0 . . . F 4 -27.089 5.943 -38.249 0.8 50.45 0 O01 VW0 402 B 1 HETATM 14 O O04 VW0 . . . F 4 -30.145 6.306 -36.311 0.8 48.73 0 O04 VW0 402 B 1 HETATM 15 O O08 VW0 . . . F 4 -29.954 3.128 -37.693 0.8 48.33 0 O08 VW0 402 B 1 HETATM 16 O O09 VW0 . . . F 4 -29.561 3.503 -35.53 0.8 49.07 0 O09 VW0 402 B 1 HETATM 17 O O14 VW0 . . . F 4 -27.596 8.142 -32.999 0.8 45.95 0 O14 VW0 402 B 1 HETATM 18 O O17 VW0 . . . F 4 -28.691 8.792 -37.459 0.8 52.48 0 O17 VW0 402 B 1 HETATM 19 O O20 VW0 . . . F 4 -30.829 7.836 -38.939 0.8 58.59 0 O20 VW0 402 B 1 HETATM 20 O O22 VW0 . . . F 4 -32.019 8.745 -36.926 0.8 59.27 0 O22 VW0 402 B 1 HETATM 21 O O23 VW0 . . . F 4 -30.96 10.332 -38.57 0.8 58.59 0 O23 VW0 402 B 1 HETATM 22 O O24 VW0 . . . F 4 -33.013 9.014 -39.215 0.8 53.87 0 O24 VW0 402 B 1 HETATM 23 P P21 VW0 . . . F 4 -31.749 9.04 -38.388 0.8 61.43 0 P21 VW0 402 B 1 HETATM 24 O O02 VW0 . . . F 4 -26.44 8.445 -37.072 0.8 54.73 0 O02 VW0 402 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #